Wall clock time and date at job start Tue Mar 31 2020 17:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 117.00096 * 2 1 4 4 C 1.38861 * 120.40239 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99348 * 179.97438 * 4 3 2 6 6 C 1.31681 * 121.94371 * 0.02562 * 5 4 3 7 7 C 1.39523 * 120.69141 * 0.02562 * 6 5 4 8 8 C 1.47860 * 120.52935 * 179.97438 * 7 6 5 9 9 O 1.21547 * 119.99613 * 126.08590 * 8 7 6 10 10 N 1.34771 * 120.00081 * 306.08361 * 8 7 6 11 11 C 1.46959 * 120.65667 * 354.06248 * 10 8 7 12 12 C 1.53194 * 108.89003 * 233.52908 * 11 10 8 13 13 C 1.53033 * 109.31092 * 305.43990 * 12 11 10 14 14 C 1.53041 * 109.54072 * 61.36484 * 13 12 11 15 15 H 1.09005 * 109.49989 * 58.57983 * 14 13 12 16 16 C 1.52999 * 109.53070 * 178.66905 * 14 13 12 17 17 N 1.46493 * 109.47594 * 184.85529 * 16 14 13 18 18 C 1.36930 * 120.00360 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00224 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00255 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46981 * 90.00363 * 22 20 18 24 24 H 1.48496 * 109.47108 * 210.00253 * 22 20 18 25 25 H 1.48501 * 109.47365 * 330.00669 * 22 20 18 26 26 C 1.46927 * 120.63058 * 174.23622 * 10 8 7 27 27 C 1.38837 * 120.40463 * 180.28154 * 3 2 1 28 28 C 1.50704 * 120.88190 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.47115 * 59.99644 * 1 2 3 30 30 H 1.09000 * 109.47648 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47213 * 300.00197 * 1 2 3 32 32 H 1.07991 * 119.50117 * 359.95614 * 4 3 2 33 33 H 1.08002 * 119.65410 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47010 * 113.74064 * 11 10 8 35 35 H 1.09009 * 109.70885 * 353.45905 * 11 10 8 36 36 H 1.08994 * 109.49873 * 185.49043 * 12 11 10 37 37 H 1.09005 * 109.49776 * 65.39042 * 12 11 10 38 38 H 1.08997 * 109.46504 * 301.34411 * 13 12 11 39 39 H 1.08999 * 109.45136 * 181.37873 * 13 12 11 40 40 H 1.09005 * 109.46486 * 304.85589 * 16 14 13 41 41 H 1.09000 * 109.47333 * 64.84789 * 16 14 13 42 42 H 0.97006 * 119.99597 * 359.97438 * 17 16 14 43 43 H 0.96991 * 120.00421 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58315 * 6.60838 * 26 10 8 45 45 H 1.08998 * 109.58722 * 246.32828 * 26 10 8 46 46 H 1.08992 * 109.47263 * 275.19002 * 28 27 3 47 47 H 1.09000 * 109.46545 * 35.18637 * 28 27 3 48 48 H 1.08997 * 109.47153 * 155.18485 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3810 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1953 3.6891 0.0006 7 6 4.0198 2.5636 -0.0010 8 6 5.4911 2.7103 -0.0021 9 8 6.1580 2.1530 0.8476 10 7 6.0927 3.4620 -0.9452 11 6 5.3168 4.0356 -2.0537 12 6 5.9715 3.6318 -3.3785 13 6 7.4446 4.0460 -3.3620 14 6 8.1677 3.3204 -2.2249 15 1 8.0741 2.2432 -2.3631 16 6 9.6474 3.7092 -2.2293 17 7 10.3608 2.9277 -1.2162 18 6 11.7066 3.1054 -1.0367 19 1 12.2421 3.8221 -1.6417 20 6 12.3824 2.3652 -0.0763 21 7 11.7298 1.4922 0.6614 22 14 14.2185 2.6072 0.1681 23 1 14.4474 3.6677 1.1823 24 1 14.8275 1.3359 0.6352 25 1 14.8404 3.0105 -1.1187 26 6 7.5378 3.7207 -0.8871 27 6 3.4320 1.2935 -0.0059 28 6 4.2810 0.0484 -0.0130 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2197 2.3227 0.0002 33 1 3.6367 4.6748 0.0006 34 1 5.3078 5.1221 -1.9668 35 1 4.2947 3.6580 -2.0211 36 1 5.4625 4.1310 -4.2029 37 1 5.8987 2.5516 -3.5059 38 1 7.5175 5.1228 -3.2098 39 1 7.9067 3.7817 -4.3132 40 1 10.0735 3.5057 -3.2118 41 1 9.7447 4.7712 -2.0040 42 1 9.8797 2.2842 -0.6726 43 1 12.2021 0.9747 1.3321 44 1 7.9821 3.1331 -0.0837 45 1 7.7122 4.7809 -0.7039 46 1 4.4133 -0.3069 1.0089 47 1 3.7890 -0.7233 -0.6051 48 1 5.2544 0.2748 -0.4479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480288855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:48 Heat of formation + Delta-G solvation = -26.723775 kcal Electronic energy + Delta-G solvation = -29188.824503 eV Core-core repulsion = 25244.356512 eV Total energy + Delta-G solvation = -3944.467991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34734 -39.95760 -38.36051 -37.52050 -34.93458 -34.02384 -32.99033 -31.70767 -31.04397 -29.64645 -28.17020 -27.96639 -25.79267 -25.51803 -23.57239 -23.17739 -22.54362 -21.41274 -20.33059 -19.35467 -18.15798 -17.76292 -17.02293 -16.69656 -16.50157 -16.25780 -15.94203 -15.12381 -14.77273 -14.64462 -14.44097 -14.16405 -14.00781 -13.60367 -13.51436 -13.29122 -13.05549 -13.03650 -12.88653 -12.80141 -12.48964 -12.36480 -12.32147 -11.93967 -11.87072 -11.49259 -11.09047 -11.01452 -10.81573 -10.66418 -10.41255 -10.33323 -10.25803 -9.95428 -9.70085 -9.60184 -9.43582 -8.83295 -8.76719 -8.54095 -6.86506 -5.69077 -2.98919 0.48614 0.90977 2.50388 2.78319 3.04945 3.41780 3.47865 3.52383 3.54627 4.04795 4.18994 4.32764 4.46165 4.56785 4.62181 4.70091 4.73758 4.81952 4.87818 4.99278 5.00265 5.10124 5.20185 5.28725 5.32959 5.43516 5.49624 5.58683 5.63956 5.64169 5.80242 5.83573 5.89455 5.93777 5.98219 6.09864 6.12910 6.17061 6.21348 6.39985 6.54091 6.62048 6.78199 6.78424 6.89243 7.40441 7.53388 7.75229 8.15979 8.48586 9.59611 10.17491 10.51696 11.53181 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.002735 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.310030 B =10236.858794 C =11149.598532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.072 3.928 4 C 0.031 3.969 5 N -0.454 5.454 6 C 0.097 3.903 7 C -0.136 4.136 8 C 0.561 3.439 9 O -0.512 6.512 10 N -0.602 5.602 11 C 0.104 3.896 12 C -0.133 4.133 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.074 0.926 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.120 3.880 27 C -0.025 4.025 28 C -0.111 4.111 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.395 1.953 -6.526 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.024 3.976 4 C -0.126 4.126 5 N -0.163 5.163 6 C -0.061 4.061 7 C -0.142 4.142 8 C 0.347 3.653 9 O -0.387 6.387 10 N -0.335 5.335 11 C -0.019 4.019 12 C -0.171 4.171 13 C -0.150 4.150 14 C -0.126 4.126 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.001 4.001 27 C -0.034 4.034 28 C -0.167 4.167 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.298 2.230 -6.074 27.082 hybrid contribution 1.032 -0.648 0.324 1.261 sum -25.266 1.582 -5.750 25.960 Atomic orbital electron populations 1.23151 0.77917 1.04546 1.01566 1.86112 1.21570 1.25531 1.88495 1.19722 0.92178 0.86071 0.99628 1.23016 1.00615 0.87071 1.01892 1.67536 1.11734 1.25945 1.11074 1.22816 0.88398 0.98121 0.96807 1.20810 0.95164 0.93849 1.04336 1.17989 0.86250 0.79025 0.82072 1.90892 1.64847 1.45423 1.37488 1.48112 1.09732 1.50786 1.24919 1.21849 0.95159 0.98588 0.86339 1.21902 0.96804 1.01994 0.96391 1.21526 0.94138 1.00397 0.98982 1.21686 0.96249 1.00860 0.93846 0.90746 1.20629 0.88149 0.94819 0.93140 1.42415 1.06514 1.47125 1.41738 1.19196 0.84762 1.18016 1.15328 0.91242 1.24758 0.97972 0.99174 0.99022 1.69670 1.34928 1.27771 1.25380 0.86211 0.85465 0.76913 0.77704 1.21746 1.21814 1.20831 1.21793 0.77138 1.01587 0.99603 1.19741 0.90914 0.95599 0.97166 1.20733 0.98804 0.93329 1.03843 0.92352 0.87736 0.92323 0.82179 0.81925 0.91004 0.90231 0.90795 0.91537 0.91648 0.91447 0.96050 0.96221 0.78068 0.93484 0.87649 0.91259 0.89641 0.90593 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.82 9.76 -19.51 -0.19 -3.02 16 3 C 0.07 0.76 6.68 -39.13 -0.26 0.50 16 4 C 0.03 0.30 10.21 -17.30 -0.18 0.12 16 5 N -0.45 -5.04 10.34 -12.80 -0.13 -5.17 16 6 C 0.10 1.10 8.97 -17.14 -0.15 0.94 16 7 C -0.14 -1.77 4.61 -104.84 -0.48 -2.26 16 8 C 0.56 8.78 6.17 -12.33 -0.08 8.70 16 9 O -0.51 -10.25 15.49 5.32 0.08 -10.17 16 10 N -0.60 -8.39 2.98 -173.85 -0.52 -8.91 16 11 C 0.10 1.06 5.58 -3.69 -0.02 1.04 16 12 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 13 C -0.11 -1.34 5.17 -26.69 -0.14 -1.48 16 14 C -0.11 -1.71 2.38 -90.50 -0.22 -1.93 16 15 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 16 C 0.16 3.20 5.66 -4.05 -0.02 3.18 16 17 N -0.73 -18.87 5.38 -59.91 -0.32 -19.19 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 22 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.12 1.97 5.52 -3.71 -0.02 1.95 16 27 C -0.03 -0.32 5.96 -103.76 -0.62 -0.94 16 28 C -0.11 -1.40 9.10 36.01 0.33 -1.07 16 29 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 32 H 0.16 1.03 6.30 -52.49 -0.33 0.70 16 33 H 0.16 1.55 7.76 -52.49 -0.41 1.14 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.75 5.41 -51.92 -0.28 0.47 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.39 10.61 6.89 -40.82 -0.28 10.33 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.11 2.18 6.19 -51.93 -0.32 1.86 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 48 H 0.08 1.10 6.71 -51.93 -0.35 0.75 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -34.81 383.38 -8.24 -43.06 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.37 Total: 7.17 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.27 Total: 0.88 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.25 Total: -61.55 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.11 Total: -13.18 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.81 -8.24 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480288855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.332 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds