Wall clock time and date at job start Tue Mar 31 2020 17:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38362 * 119.40433 * 2 1 4 4 C 1.38338 * 119.45589 * 180.25406 * 3 2 1 5 5 C 1.50696 * 120.82293 * 179.75395 * 4 3 2 6 6 C 1.39991 * 118.34690 * 359.47630 * 4 3 2 7 7 C 1.47531 * 120.59353 * 180.23058 * 6 4 3 8 8 O 1.21589 * 119.99695 * 90.00008 * 7 6 4 9 9 N 1.34774 * 120.00147 * 269.99953 * 7 6 4 10 10 C 1.46494 * 120.00290 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47647 * 175.12841 * 10 9 7 12 12 N 1.46497 * 110.01213 * 303.90368 * 11 10 9 13 13 C 1.36945 * 120.00062 * 301.44474 * 12 11 10 14 14 H 1.08001 * 119.99284 * 354.22546 * 13 12 11 15 15 C 1.38809 * 120.00133 * 174.22431 * 13 12 11 16 16 N 1.31617 * 119.99923 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00139 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47329 * 89.99507 * 17 15 13 19 19 H 1.48495 * 109.47294 * 209.99648 * 17 15 13 20 20 H 1.48503 * 109.47107 * 330.00142 * 17 15 13 21 21 C 1.54256 * 110.03456 * 182.45923 * 11 10 9 22 22 C 1.54888 * 104.19510 * 217.10305 * 21 11 10 23 23 C 1.54890 * 102.74907 * 37.94458 * 22 21 11 24 24 C 1.53879 * 110.03016 * 65.28777 * 11 10 9 25 25 C 1.40272 * 118.80772 * 0.25387 * 6 4 3 26 26 O 1.35429 * 119.80024 * 179.97438 * 25 6 4 27 27 N 1.31876 * 119.41187 * 179.71946 * 2 1 3 28 28 H 1.08993 * 109.47531 * 270.27496 * 1 2 3 29 29 H 1.08999 * 109.47132 * 30.28116 * 1 2 3 30 30 H 1.09006 * 109.46773 * 150.27767 * 1 2 3 31 31 H 1.07998 * 120.27175 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46867 * 269.71182 * 5 4 3 33 33 H 1.08999 * 109.46997 * 149.71834 * 5 4 3 34 34 H 1.08992 * 109.47469 * 29.71491 * 5 4 3 35 35 H 0.97007 * 119.99926 * 0.02562 * 9 7 6 36 36 H 1.09010 * 109.47058 * 295.12788 * 10 9 7 37 37 H 1.08993 * 109.47317 * 55.12307 * 10 9 7 38 38 H 0.97000 * 120.00541 * 121.45055 * 12 11 10 39 39 H 0.97001 * 120.00154 * 180.02562 * 16 15 13 40 40 H 1.09001 * 110.48680 * 335.77768 * 21 11 10 41 41 H 1.09003 * 110.48854 * 98.42712 * 21 11 10 42 42 H 1.09003 * 110.76241 * 279.62601 * 22 21 11 43 43 H 1.09006 * 110.76163 * 156.25608 * 22 21 11 44 44 H 1.09004 * 110.48435 * 203.37869 * 23 22 21 45 45 H 1.08997 * 110.48713 * 80.73713 * 23 22 21 46 46 H 1.08999 * 110.03059 * 238.57231 * 24 11 10 47 47 H 1.08997 * 110.03629 * 0.02562 * 24 11 10 48 48 H 0.96707 * 113.99751 * 89.99659 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5697 1.2066 -0.0053 5 6 4.3406 2.5014 -0.0111 6 6 4.2355 -0.0248 0.0007 7 6 5.7097 -0.0813 0.0005 8 8 6.3175 -0.0992 1.0534 9 7 6.3828 -0.1129 -1.1667 10 6 7.8466 -0.1696 -1.1669 11 6 8.3512 -0.3187 -2.6037 12 7 7.7482 -1.4995 -3.2268 13 6 7.9270 -2.7361 -2.6661 14 1 8.5874 -2.8549 -1.8199 15 6 7.2593 -3.8367 -3.1855 16 7 7.4307 -5.0251 -2.6463 17 14 6.1176 -3.6312 -4.6496 18 1 6.8862 -3.8164 -5.9066 19 1 5.0339 -4.6440 -4.5782 20 1 5.5249 -2.2697 -4.6279 21 6 9.8888 -0.4415 -2.6137 22 6 10.3240 0.3392 -3.8787 23 6 9.3452 1.5396 -3.8930 24 6 8.0054 0.9410 -3.4171 25 6 3.4758 -1.2039 0.0064 26 8 4.0992 -2.4062 0.0117 27 7 2.1546 -1.1488 0.0056 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5096 31 1 1.6411 2.1376 -0.0004 32 1 4.5270 2.8088 -1.0401 33 1 5.2910 2.3607 0.5038 34 1 3.7617 3.2713 0.4989 35 1 5.8979 -0.0983 -2.0068 36 1 8.2458 0.7483 -0.7351 37 1 8.1773 -1.0232 -0.5753 38 1 7.2225 -1.4056 -4.0365 39 1 6.9645 -5.7942 -3.0095 40 1 10.3138 0.0140 -1.7193 41 1 10.1875 -1.4871 -2.6892 42 1 10.1986 -0.2722 -4.7723 43 1 11.3544 0.6822 -3.7856 44 1 9.2471 1.9398 -4.9022 45 1 9.6824 2.3150 -3.2052 46 1 7.3898 0.6735 -4.2759 47 1 7.4786 1.6587 -2.7882 48 1 4.2806 -2.7513 0.8967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482226443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:55 Heat of formation + Delta-G solvation = -38.044320 kcal Electronic energy + Delta-G solvation = -30078.420782 eV Core-core repulsion = 26133.461895 eV Total energy + Delta-G solvation = -3944.958887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87013 -39.23346 -38.09226 -37.18936 -34.24946 -34.13969 -33.29627 -31.81488 -30.93443 -28.97370 -28.36788 -27.93578 -27.47776 -24.58306 -23.26351 -22.79892 -21.71502 -20.60162 -19.88374 -18.74774 -18.29520 -17.56867 -17.47260 -17.15092 -15.88313 -15.50171 -15.32573 -14.78906 -14.58412 -14.36729 -14.16380 -14.11220 -13.65710 -13.48814 -13.14544 -13.09509 -12.95292 -12.85561 -12.62028 -12.54962 -12.06981 -12.06400 -11.88877 -11.79991 -11.49890 -11.28031 -10.84952 -10.81617 -10.67127 -10.46611 -10.36673 -10.24877 -10.00568 -9.97995 -9.62247 -9.51494 -9.28663 -8.89253 -8.80384 -8.51701 -7.27616 -5.73768 -3.10615 0.77746 1.05070 2.86368 3.32365 3.38002 3.39033 3.48109 3.52613 3.78852 4.39668 4.43436 4.61290 4.85426 4.91397 4.99146 5.04144 5.04726 5.11294 5.19981 5.29791 5.34683 5.39861 5.40728 5.49944 5.56256 5.67082 5.69761 5.82527 5.84486 5.85949 5.87554 5.97425 6.03555 6.07519 6.15717 6.19818 6.32945 6.40645 6.44880 6.47421 6.68095 6.74186 6.90345 7.01518 7.59222 7.87905 7.93249 8.01243 8.44403 8.55893 9.21283 9.93784 10.11275 11.44307 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.004784 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.559650 B = 5851.899645 C = 7313.921225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.164 3.836 3 C -0.193 4.193 4 C 0.007 3.993 5 C -0.123 4.123 6 C -0.199 4.199 7 C 0.574 3.426 8 O -0.546 6.546 9 N -0.686 5.686 10 C 0.119 3.881 11 C 0.195 3.805 12 N -0.736 5.736 13 C -0.239 4.239 14 H 0.091 0.909 15 C 0.014 3.986 16 N -0.928 5.928 17 Si 0.880 3.120 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.280 1.280 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.129 4.129 25 C 0.362 3.638 26 O -0.462 6.462 27 N -0.508 5.508 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.400 0.600 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.360 0.640 39 H 0.258 0.742 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 17.788 2.878 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.213 4.213 4 C -0.001 4.001 5 C -0.179 4.179 6 C -0.205 4.205 7 C 0.358 3.642 8 O -0.425 6.425 9 N -0.334 5.334 10 C -0.006 4.006 11 C 0.103 3.897 12 N -0.379 5.379 13 C -0.369 4.369 14 H 0.109 0.891 15 C -0.182 4.182 16 N -0.575 5.575 17 Si 0.711 3.289 18 H -0.214 1.214 19 H -0.219 1.219 20 H -0.206 1.206 21 C -0.170 4.170 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.167 4.167 25 C 0.182 3.818 26 O -0.270 6.270 27 N -0.228 5.228 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.976 16.782 3.166 18.849 hybrid contribution -0.640 0.362 -1.036 1.271 sum -8.617 17.144 2.130 19.306 Atomic orbital electron populations 1.20776 0.88395 1.03786 1.03308 1.21149 0.96877 0.87200 0.92230 1.21704 0.93623 0.99411 1.06546 1.20232 0.93631 0.94153 0.92123 1.20914 1.00494 0.93089 1.03397 1.21012 0.95553 0.93979 1.09982 1.17644 0.85643 0.76507 0.84443 1.90778 1.69258 1.51089 1.31327 1.45689 1.08022 1.71916 1.07756 1.21937 0.78627 1.00795 0.99261 1.20411 0.92491 0.86779 0.89977 1.42900 1.62184 1.03199 1.29577 1.18877 1.22485 0.82877 1.12660 0.89148 1.24602 0.99381 0.95467 0.98764 1.69682 1.46448 0.98691 1.42721 0.86641 0.81486 0.77000 0.83760 1.21425 1.21919 1.20608 1.22797 0.96008 1.01805 0.96426 1.22405 0.97675 0.96302 0.99187 1.22307 0.95491 0.97769 1.00237 1.22478 0.97630 0.96921 0.99691 1.19146 0.86182 0.85015 0.91464 1.84850 1.76270 1.32017 1.33826 1.67084 1.09387 1.30289 1.16054 0.90063 0.90393 0.90154 0.84113 0.89886 0.90406 0.90365 0.76608 0.92778 0.90660 0.80636 0.93149 0.92591 0.89715 0.91500 0.92470 0.92357 0.92058 0.91707 0.91831 0.73433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.16 36.01 0.37 -0.52 16 2 C 0.16 2.04 6.78 -82.53 -0.56 1.48 16 3 C -0.19 -2.11 9.41 -39.50 -0.37 -2.48 16 4 C 0.01 0.08 5.95 -103.93 -0.62 -0.53 16 5 C -0.12 -1.22 9.69 36.00 0.35 -0.87 16 6 C -0.20 -3.24 5.66 -104.69 -0.59 -3.83 16 7 C 0.57 10.52 5.42 -12.47 -0.07 10.45 16 8 O -0.55 -11.50 17.10 5.29 0.09 -11.41 16 9 N -0.69 -12.20 5.10 -61.35 -0.31 -12.51 16 10 C 0.12 2.16 3.99 -4.04 -0.02 2.14 16 11 C 0.20 3.40 0.68 -130.71 -0.09 3.31 16 12 N -0.74 -15.91 4.55 -46.20 -0.21 -16.12 16 13 C -0.24 -6.36 8.87 -15.06 -0.13 -6.49 16 14 H 0.09 2.63 7.46 -52.49 -0.39 2.24 16 15 C 0.01 0.40 5.50 -17.43 -0.10 0.31 16 16 N -0.93 -28.94 13.97 55.49 0.78 -28.17 16 17 Si 0.88 22.18 27.68 -169.99 -4.71 17.48 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.28 -6.60 6.61 56.52 0.37 -6.23 16 21 C -0.13 -2.17 5.94 -25.08 -0.15 -2.32 16 22 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 23 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 24 C -0.13 -1.82 5.80 -25.61 -0.15 -1.97 16 25 C 0.36 6.31 7.77 -16.61 -0.13 6.18 16 26 O -0.46 -8.72 13.01 -17.98 -0.23 -8.96 16 27 N -0.51 -8.16 10.28 -9.21 -0.09 -8.25 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.91 7.19 -51.93 -0.37 0.54 16 34 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.40 6.99 7.98 -40.82 -0.33 6.67 16 36 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.08 1.62 7.50 -51.93 -0.39 1.23 16 38 H 0.36 7.82 5.20 -40.82 -0.21 7.60 16 39 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 40 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 41 H 0.08 1.67 7.11 -51.93 -0.37 1.30 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.94 7.44 -51.93 -0.39 0.55 16 47 H 0.06 0.81 7.55 -51.93 -0.39 0.42 16 48 H 0.41 5.95 9.06 45.56 0.41 6.36 16 LS Contribution 389.89 15.07 5.88 5.88 Total: -1.00 -34.77 389.89 -8.06 -42.82 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -6.64 Total: 17.89 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.60 Total: 1.35 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: 0.16 Total: -65.05 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.14 Total: -20.36 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.77 -8.06 -42.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482226443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.779 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds