Wall clock time and date at job start Tue Mar 31 2020 17:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38362 * 119.40433 * 2 1 4 4 C 1.38338 * 119.45589 * 180.25406 * 3 2 1 5 5 C 1.50696 * 120.82293 * 179.75395 * 4 3 2 6 6 C 1.39991 * 118.34690 * 359.47630 * 4 3 2 7 7 C 1.47531 * 120.59353 * 180.23058 * 6 4 3 8 8 O 1.21589 * 119.99695 * 90.00008 * 7 6 4 9 9 N 1.34774 * 120.00147 * 269.99953 * 7 6 4 10 10 C 1.46494 * 120.00290 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47647 * 175.12841 * 10 9 7 12 12 N 1.46497 * 110.01213 * 303.90368 * 11 10 9 13 13 C 1.36945 * 120.00062 * 301.44474 * 12 11 10 14 14 H 1.08001 * 119.99284 * 354.22546 * 13 12 11 15 15 C 1.38809 * 120.00133 * 174.22431 * 13 12 11 16 16 N 1.31617 * 119.99923 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00139 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47329 * 89.99507 * 17 15 13 19 19 H 1.48495 * 109.47294 * 209.99648 * 17 15 13 20 20 H 1.48503 * 109.47107 * 330.00142 * 17 15 13 21 21 C 1.54256 * 110.03456 * 182.45923 * 11 10 9 22 22 C 1.54888 * 104.19510 * 217.10305 * 21 11 10 23 23 C 1.54890 * 102.74907 * 37.94458 * 22 21 11 24 24 C 1.53879 * 110.03016 * 65.28777 * 11 10 9 25 25 C 1.40272 * 118.80772 * 0.25387 * 6 4 3 26 26 O 1.35429 * 119.80024 * 179.97438 * 25 6 4 27 27 N 1.31876 * 119.41187 * 179.71946 * 2 1 3 28 28 H 1.08993 * 109.47531 * 270.27496 * 1 2 3 29 29 H 1.08999 * 109.47132 * 30.28116 * 1 2 3 30 30 H 1.09006 * 109.46773 * 150.27767 * 1 2 3 31 31 H 1.07998 * 120.27175 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46867 * 269.71182 * 5 4 3 33 33 H 1.08999 * 109.46997 * 149.71834 * 5 4 3 34 34 H 1.08992 * 109.47469 * 29.71491 * 5 4 3 35 35 H 0.97007 * 119.99926 * 0.02562 * 9 7 6 36 36 H 1.09010 * 109.47058 * 295.12788 * 10 9 7 37 37 H 1.08993 * 109.47317 * 55.12307 * 10 9 7 38 38 H 0.97000 * 120.00541 * 121.45055 * 12 11 10 39 39 H 0.97001 * 120.00154 * 180.02562 * 16 15 13 40 40 H 1.09001 * 110.48680 * 335.77768 * 21 11 10 41 41 H 1.09003 * 110.48854 * 98.42712 * 21 11 10 42 42 H 1.09003 * 110.76241 * 279.62601 * 22 21 11 43 43 H 1.09006 * 110.76163 * 156.25608 * 22 21 11 44 44 H 1.09004 * 110.48435 * 203.37869 * 23 22 21 45 45 H 1.08997 * 110.48713 * 80.73713 * 23 22 21 46 46 H 1.08999 * 110.03059 * 238.57231 * 24 11 10 47 47 H 1.08997 * 110.03629 * 0.02562 * 24 11 10 48 48 H 0.96707 * 113.99751 * 89.99659 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5697 1.2066 -0.0053 5 6 4.3406 2.5014 -0.0111 6 6 4.2355 -0.0248 0.0007 7 6 5.7097 -0.0813 0.0005 8 8 6.3175 -0.0992 1.0534 9 7 6.3828 -0.1129 -1.1667 10 6 7.8466 -0.1696 -1.1669 11 6 8.3512 -0.3187 -2.6037 12 7 7.7482 -1.4995 -3.2268 13 6 7.9270 -2.7361 -2.6661 14 1 8.5874 -2.8549 -1.8199 15 6 7.2593 -3.8367 -3.1855 16 7 7.4307 -5.0251 -2.6463 17 14 6.1176 -3.6312 -4.6496 18 1 6.8862 -3.8164 -5.9066 19 1 5.0339 -4.6440 -4.5782 20 1 5.5249 -2.2697 -4.6279 21 6 9.8888 -0.4415 -2.6137 22 6 10.3240 0.3392 -3.8787 23 6 9.3452 1.5396 -3.8930 24 6 8.0054 0.9410 -3.4171 25 6 3.4758 -1.2039 0.0064 26 8 4.0992 -2.4062 0.0117 27 7 2.1546 -1.1488 0.0056 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5096 31 1 1.6411 2.1376 -0.0004 32 1 4.5270 2.8088 -1.0401 33 1 5.2910 2.3607 0.5038 34 1 3.7617 3.2713 0.4989 35 1 5.8979 -0.0983 -2.0068 36 1 8.2458 0.7483 -0.7351 37 1 8.1773 -1.0232 -0.5753 38 1 7.2225 -1.4056 -4.0365 39 1 6.9645 -5.7942 -3.0095 40 1 10.3138 0.0140 -1.7193 41 1 10.1875 -1.4871 -2.6892 42 1 10.1986 -0.2722 -4.7723 43 1 11.3544 0.6822 -3.7856 44 1 9.2471 1.9398 -4.9022 45 1 9.6824 2.3150 -3.2052 46 1 7.3898 0.6735 -4.2759 47 1 7.4786 1.6587 -2.7882 48 1 4.2806 -2.7513 0.8967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482226443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:54 Heat of formation + Delta-G solvation = -66.899887 kcal Electronic energy + Delta-G solvation = -30079.672053 eV Core-core repulsion = 26133.461895 eV Total energy + Delta-G solvation = -3946.210158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03379 -40.62031 -39.49366 -38.45932 -35.63119 -35.30945 -35.08931 -32.94470 -32.74226 -30.29848 -29.59419 -29.08013 -28.39546 -26.11896 -24.81826 -24.19645 -22.79343 -21.81575 -21.18340 -20.24259 -19.55457 -19.51965 -18.86790 -18.25820 -17.32770 -16.88158 -16.60455 -16.32159 -16.02537 -15.64081 -15.59825 -15.17857 -14.83719 -14.80466 -14.44168 -14.27463 -14.15666 -14.01109 -13.92677 -13.66398 -13.45396 -13.24381 -13.04689 -12.97922 -12.83748 -12.63293 -12.51605 -12.33941 -11.98234 -11.94617 -11.87381 -11.62556 -11.45632 -11.40073 -11.30599 -10.92058 -10.63092 -10.48426 -10.04991 -9.86879 -9.27901 -7.97781 -5.30204 -0.30068 0.03300 1.31516 1.37024 1.42419 1.43761 2.17749 2.31492 2.49011 2.63894 3.32073 3.42817 3.52301 3.55611 3.67235 3.75216 3.91149 3.98394 4.05362 4.19752 4.30352 4.41282 4.51453 4.54093 4.58057 4.63832 4.67406 4.70015 4.79908 4.83218 4.91696 4.95379 5.00201 5.02456 5.09449 5.12896 5.18122 5.18790 5.25885 5.37003 5.41606 5.52730 5.53153 5.62193 5.86005 6.25673 6.38371 6.47000 6.81451 7.11424 7.13346 7.87607 8.05097 9.24197 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.004784 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.559650 B = 5851.899645 C = 7313.921225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.156 3.844 3 C -0.174 4.174 4 C 0.008 3.992 5 C -0.120 4.120 6 C -0.222 4.222 7 C 0.577 3.423 8 O -0.583 6.583 9 N -0.683 5.683 10 C 0.126 3.874 11 C 0.188 3.812 12 N -0.734 5.734 13 C -0.202 4.202 14 H 0.051 0.949 15 C -0.060 4.060 16 N -0.984 5.984 17 Si 0.945 3.055 18 H -0.279 1.279 19 H -0.312 1.312 20 H -0.250 1.250 21 C -0.132 4.132 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.123 4.123 25 C 0.332 3.668 26 O -0.495 6.495 27 N -0.536 5.536 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.403 0.597 36 H 0.078 0.922 37 H 0.027 0.973 38 H 0.364 0.636 39 H 0.252 0.748 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 23.014 1.315 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.018 3.982 3 C -0.193 4.193 4 C 0.000 4.000 5 C -0.176 4.176 6 C -0.229 4.229 7 C 0.362 3.638 8 O -0.464 6.464 9 N -0.330 5.330 10 C 0.001 3.999 11 C 0.098 3.902 12 N -0.378 5.378 13 C -0.333 4.333 14 H 0.069 0.931 15 C -0.251 4.251 16 N -0.635 5.635 17 Si 0.774 3.226 18 H -0.205 1.205 19 H -0.240 1.240 20 H -0.175 1.175 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.161 4.161 25 C 0.153 3.847 26 O -0.304 6.304 27 N -0.257 5.257 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.209 0.791 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.238 0.762 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.198 0.802 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -9.984 22.092 1.581 24.295 hybrid contribution -0.002 -1.181 -0.412 1.251 sum -9.987 20.912 1.169 23.203 Atomic orbital electron populations 1.20932 0.85353 1.04982 1.04719 1.22003 0.98834 0.86834 0.90534 1.22208 0.92777 1.00730 1.03558 1.20668 0.94773 0.93776 0.90758 1.21007 0.99558 0.92300 1.04710 1.20910 0.93933 0.95327 1.12709 1.18001 0.86725 0.75244 0.83809 1.90741 1.70413 1.52712 1.32517 1.45675 1.07776 1.71630 1.07893 1.21834 0.79147 0.99868 0.99070 1.20743 0.92631 0.86975 0.89861 1.42866 1.62387 1.02783 1.29725 1.18705 1.19524 0.84832 1.10220 0.93060 1.25336 1.02135 0.95238 1.02360 1.69877 1.48729 0.99678 1.45251 0.85568 0.78934 0.77720 0.80405 1.20504 1.23959 1.17489 1.22752 0.95445 1.00011 0.98989 1.22382 0.99597 0.96547 0.96619 1.22295 0.93267 0.97093 1.02052 1.22447 0.99167 0.95056 0.99401 1.19316 0.87061 0.84595 0.93718 1.84793 1.76958 1.33598 1.35016 1.67097 1.08708 1.32570 1.17313 0.88390 0.86891 0.91230 0.79133 0.88008 0.92634 0.86930 0.76217 0.90358 0.95465 0.80162 0.93960 0.91138 0.93911 0.92909 0.90338 0.90203 0.89914 0.91456 0.89739 0.72703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.16 71.24 0.72 -0.64 16 2 C 0.16 3.48 6.78 42.58 0.29 3.77 16 3 C -0.17 -3.06 9.41 22.32 0.21 -2.85 16 4 C 0.01 0.19 5.95 -19.42 -0.12 0.07 16 5 C -0.12 -1.94 9.69 71.23 0.69 -1.25 16 6 C -0.22 -7.26 5.66 -19.91 -0.11 -7.37 16 7 C 0.58 21.71 5.42 86.69 0.47 22.18 16 8 O -0.58 -25.67 17.10 -4.00 -0.07 -25.74 16 9 N -0.68 -24.45 5.10 -466.29 -2.38 -26.82 16 10 C 0.13 4.64 3.99 86.38 0.34 4.99 16 11 C 0.19 6.44 0.68 4.33 0.00 6.44 16 12 N -0.73 -31.98 4.55 -300.08 -1.37 -33.35 16 13 C -0.20 -11.24 8.87 84.03 0.75 -10.50 16 14 H 0.05 3.24 7.46 -2.91 -0.02 3.21 16 15 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 16 N -0.98 -65.11 13.97 21.65 0.30 -64.80 16 17 Si 0.94 46.96 27.68 68.60 1.90 48.86 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.31 -16.43 7.11 99.48 0.71 -15.73 16 20 H -0.25 -11.05 6.61 99.48 0.66 -10.39 16 21 C -0.13 -4.38 5.94 31.67 0.19 -4.19 16 22 C -0.11 -2.93 6.91 31.88 0.22 -2.71 16 23 C -0.11 -2.23 6.83 31.67 0.22 -2.01 16 24 C -0.12 -3.04 5.80 31.32 0.18 -2.86 16 25 C 0.33 11.99 7.77 85.13 0.66 12.65 16 26 O -0.49 -20.24 13.01 -87.24 -1.14 -21.38 16 27 N -0.54 -17.18 10.28 -296.06 -3.04 -20.23 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.73 8.07 -2.39 -0.02 0.71 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.19 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.19 7.19 -2.39 -0.02 1.17 16 34 H 0.11 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.40 13.83 7.98 -92.70 -0.74 13.09 16 36 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.03 1.25 7.50 -2.39 -0.02 1.23 16 38 H 0.36 15.35 5.20 -92.71 -0.48 14.87 16 39 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 40 H 0.07 2.10 7.85 -2.39 -0.02 2.08 16 41 H 0.04 1.76 7.11 -2.39 -0.02 1.74 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.68 7.44 -2.39 -0.02 1.66 16 47 H 0.08 1.78 7.55 -2.39 -0.02 1.76 16 48 H 0.41 13.82 9.06 -74.05 -0.67 13.15 16 Total: -1.00 -83.83 389.89 -1.55 -85.38 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -0.94 Total: 45.49 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.18 Total: 12.59 kcal Atomic # 7 Polarization: -138.72 SS G_CDS: -6.48 Total: -145.20 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.20 Total: -47.12 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.90 Total: 48.86 kcal Total: -83.83 -1.55 -85.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482226443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.475 kcal (2) G-P(sol) polarization free energy of solvation -83.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds