Wall clock time and date at job start Tue Mar 31 2020 17:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38092 * 119.58693 * 2 1 4 4 C 1.38787 * 119.28508 * 179.74794 * 3 2 1 5 5 C 1.50699 * 120.75495 * 180.25811 * 4 3 2 6 6 C 1.38424 * 118.48792 * 0.49888 * 4 3 2 7 7 C 1.50692 * 120.44143 * 179.75419 * 6 4 3 8 8 C 1.50699 * 109.47403 * 269.72512 * 7 6 4 9 9 O 1.21278 * 119.99913 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99919 * 180.02562 * 8 7 6 11 11 C 1.47423 * 125.65020 * 355.04930 * 10 8 7 12 12 C 1.54913 * 104.83157 * 155.91282 * 11 10 8 13 13 C 1.55158 * 101.58415 * 37.00426 * 12 11 10 14 14 C 1.47495 * 125.58940 * 175.06798 * 10 8 7 15 15 H 1.09000 * 109.96216 * 300.33124 * 14 10 8 16 16 C 1.52995 * 110.02972 * 61.64442 * 14 10 8 17 17 N 1.46502 * 109.47204 * 182.92835 * 16 14 10 18 18 C 1.36932 * 120.00493 * 185.02198 * 17 16 14 19 19 H 1.08002 * 119.99633 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99963 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00562 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99967 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47230 * 89.99636 * 22 20 18 24 24 H 1.48497 * 109.47274 * 209.99794 * 22 20 18 25 25 H 1.48509 * 109.46938 * 329.99954 * 22 20 18 26 26 C 1.38875 * 119.10996 * 359.48646 * 6 4 3 27 27 O 1.35678 * 119.68191 * 180.29436 * 26 6 4 28 28 N 1.31940 * 119.57964 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46844 * 270.02206 * 1 2 3 30 30 H 1.08998 * 109.46839 * 30.01499 * 1 2 3 31 31 H 1.08994 * 109.47449 * 150.01280 * 1 2 3 32 32 H 1.07998 * 120.35539 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47593 * 270.24580 * 5 4 3 34 34 H 1.09001 * 109.47599 * 30.24601 * 5 4 3 35 35 H 1.08997 * 109.47214 * 150.24548 * 5 4 3 36 36 H 1.09003 * 109.46680 * 149.72655 * 7 6 4 37 37 H 1.09002 * 109.47767 * 29.72874 * 7 6 4 38 38 H 1.08991 * 110.37025 * 37.07067 * 11 10 8 39 39 H 1.09007 * 110.45405 * 274.79550 * 11 10 8 40 40 H 1.09003 * 111.00392 * 278.92917 * 12 11 10 41 41 H 1.08997 * 111.00270 * 155.08143 * 12 11 10 42 42 H 1.09004 * 110.71636 * 82.85829 * 13 12 11 43 43 H 1.08998 * 110.71819 * 205.95626 * 13 12 11 44 44 H 1.08999 * 109.47364 * 302.92659 * 16 14 10 45 45 H 1.08999 * 109.47544 * 62.92966 * 16 14 10 46 46 H 0.97008 * 119.99690 * 5.01478 * 17 16 14 47 47 H 0.96991 * 120.00115 * 180.02562 * 21 20 18 48 48 H 0.96699 * 113.99674 * 89.99794 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5767 1.1935 0.0053 5 6 4.3541 2.4845 0.0113 6 6 4.2305 -0.0265 -0.0001 7 6 5.7363 -0.0858 -0.0002 8 6 6.2381 -0.1059 -1.4211 9 8 5.4506 -0.0757 -2.3428 10 7 7.5622 -0.1587 -1.6674 11 6 8.6283 -0.0975 -0.6510 12 6 9.8442 -0.7963 -1.3092 13 6 9.7105 -0.3311 -2.7834 14 6 8.1831 -0.2867 -2.9991 15 1 7.8495 -1.2072 -3.4783 16 6 7.8149 0.9182 -3.8671 17 7 8.3794 0.7450 -5.2078 18 6 8.2675 1.7485 -6.1328 19 1 7.7628 2.6675 -5.8740 20 6 8.8020 1.5841 -7.4032 21 7 9.4167 0.4638 -7.7188 22 14 8.6487 2.9528 -8.6653 23 1 9.8216 3.8574 -8.5594 24 1 8.5979 2.3658 -10.0284 25 1 7.4048 3.7233 -8.4113 26 6 3.4802 -1.1951 0.0002 27 8 4.1091 -2.3973 0.0010 28 7 2.1583 -1.1474 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8900 -0.5136 32 1 1.6479 2.1356 0.0004 33 1 4.5417 2.8005 -1.0148 34 1 3.7791 3.2526 0.5285 35 1 5.3038 2.3343 0.5246 36 1 6.0643 -0.9893 0.5138 37 1 6.1345 0.7893 0.5133 38 1 8.3253 -0.6317 0.2493 39 1 8.8691 0.9388 -0.4135 40 1 9.7604 -1.8804 -1.2325 41 1 10.7795 -0.4464 -0.8724 42 1 10.1476 0.6585 -2.9166 43 1 10.1746 -1.0503 -3.4582 44 1 6.7301 0.9976 -3.9371 45 1 8.2174 1.8261 -3.4179 46 1 8.8326 -0.0806 -5.4403 47 1 9.7904 0.3491 -8.6065 48 1 4.2912 -2.7454 0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483943221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:07 Heat of formation + Delta-G solvation = -61.162262 kcal Electronic energy + Delta-G solvation = -29145.931425 eV Core-core repulsion = 25199.970070 eV Total energy + Delta-G solvation = -3945.961356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95796 -40.95681 -38.64370 -38.30512 -36.44299 -35.78444 -33.61841 -32.95721 -32.58425 -31.14910 -30.18194 -28.67198 -26.99281 -26.74131 -24.80856 -23.86887 -23.32116 -22.16162 -21.54546 -20.17674 -19.40629 -19.10350 -18.33234 -18.06096 -17.53199 -16.78611 -16.45036 -16.34273 -16.01112 -15.63294 -15.27127 -15.06996 -15.01625 -14.93561 -14.48385 -14.22898 -14.09051 -13.90037 -13.83871 -13.67741 -13.55314 -13.23954 -13.06750 -12.93709 -12.85656 -12.82133 -12.71640 -12.49257 -12.44106 -12.23187 -12.03576 -11.92614 -11.81003 -11.58102 -11.07928 -10.86992 -10.45266 -10.38200 -9.67165 -9.61586 -9.07049 -8.00225 -5.30407 -0.02745 0.19520 1.42481 1.45780 1.54265 1.65613 1.94416 2.52059 2.57045 2.67863 3.32141 3.41756 3.55837 3.66916 3.67441 3.81506 3.86673 3.93978 4.02089 4.12317 4.19853 4.30686 4.35422 4.36494 4.44969 4.53203 4.54980 4.62093 4.70235 4.75032 4.77503 4.83253 4.85968 4.96267 4.99258 5.04816 5.09885 5.14315 5.16345 5.20979 5.32225 5.35564 5.40608 5.47461 5.66448 6.21081 6.59061 6.63600 6.96503 7.21366 7.27402 7.98862 8.26271 9.23203 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.003081 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.285643 B = 9087.068404 C =10396.201782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.134 3.866 3 C -0.188 4.188 4 C -0.021 4.021 5 C -0.119 4.119 6 C -0.155 4.155 7 C -0.074 4.074 8 C 0.521 3.479 9 O -0.585 6.585 10 N -0.613 5.613 11 C 0.094 3.906 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.137 3.863 15 H 0.043 0.957 16 C 0.156 3.844 17 N -0.737 5.737 18 C -0.251 4.251 19 H 0.068 0.932 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.977 3.023 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.313 3.687 27 O -0.492 6.492 28 N -0.542 5.542 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.166 0.834 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.071 0.929 44 H -0.001 1.001 45 H 0.023 0.977 46 H 0.375 0.625 47 H 0.254 0.746 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 0.440 28.948 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.003 4.003 3 C -0.207 4.207 4 C -0.028 4.028 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.114 4.114 8 C 0.312 3.688 9 O -0.464 6.464 10 N -0.347 5.347 11 C -0.027 4.027 12 C -0.157 4.157 13 C -0.156 4.156 14 C 0.033 3.967 15 H 0.061 0.939 16 C 0.028 3.972 17 N -0.381 5.381 18 C -0.382 4.382 19 H 0.086 0.914 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.805 3.195 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.200 1.200 26 C 0.135 3.865 27 O -0.301 6.301 28 N -0.263 5.263 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.184 0.816 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.017 0.983 45 H 0.041 0.959 46 H 0.207 0.793 47 H 0.063 0.937 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -8.637 -0.139 27.857 29.165 hybrid contribution 0.458 0.550 -1.272 1.459 sum -8.179 0.411 26.585 27.817 Atomic orbital electron populations 1.20820 0.86393 1.04128 1.04413 1.21589 0.98315 0.87130 0.93220 1.22153 0.94001 1.00217 1.04367 1.20474 0.94468 0.95545 0.92352 1.20956 1.00818 0.92863 1.02826 1.20337 0.96394 0.92950 1.06148 1.20489 0.90668 1.07875 0.92361 1.20927 0.80430 0.75231 0.92242 1.90751 1.55965 1.51249 1.48432 1.48772 1.05497 1.72422 1.08028 1.22721 0.86079 1.02482 0.91442 1.22818 0.99053 1.01267 0.92579 1.22551 0.91446 1.02570 0.99016 1.21585 0.94801 0.96329 0.83986 0.93895 1.20904 0.95007 0.95920 0.85327 1.42348 1.68133 1.18286 1.09301 1.19548 1.29699 0.95999 0.92988 0.91443 1.25594 1.01200 1.00070 0.99506 1.69812 1.43848 1.27000 1.21039 0.85094 0.78028 0.78308 0.78032 1.20490 1.21785 1.20007 1.19108 0.86930 0.85391 0.95100 1.84821 1.76471 1.33459 1.35397 1.66981 1.10060 1.32136 1.17092 0.88319 0.88543 0.91454 0.81641 0.91971 0.88146 0.89101 0.85061 0.84488 0.86778 0.89528 0.89863 0.86874 0.91107 0.90987 0.98350 0.95928 0.79283 0.93740 0.72336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.17 71.24 0.72 -0.83 16 2 C 0.13 3.13 6.78 42.51 0.29 3.42 16 3 C -0.19 -3.85 9.44 22.37 0.21 -3.64 16 4 C -0.02 -0.46 5.91 -19.69 -0.12 -0.57 16 5 C -0.12 -1.94 9.67 71.24 0.69 -1.26 16 6 C -0.15 -3.77 4.40 -19.67 -0.09 -3.86 16 7 C -0.07 -1.44 4.19 29.10 0.12 -1.32 16 8 C 0.52 16.41 7.67 87.66 0.67 17.08 16 9 O -0.58 -26.04 14.87 -3.02 -0.04 -26.08 16 10 N -0.61 -17.45 3.08 -786.95 -2.42 -19.87 16 11 C 0.09 1.51 6.74 86.86 0.59 2.10 16 12 C -0.12 -2.05 7.09 31.99 0.23 -1.83 16 13 C -0.12 -3.44 6.12 31.78 0.19 -3.24 16 14 C 0.14 5.07 2.99 45.25 0.14 5.21 16 15 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.16 7.35 5.64 86.38 0.49 7.84 16 17 N -0.74 -41.26 5.38 -343.46 -1.85 -43.11 16 18 C -0.25 -15.16 9.99 84.03 0.84 -14.32 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -61.29 13.06 21.65 0.28 -61.00 16 22 Si 0.98 48.19 29.55 68.60 2.03 50.22 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 26 C 0.31 8.67 7.72 84.78 0.65 9.32 16 27 O -0.49 -12.12 12.62 -89.95 -1.14 -13.26 16 28 N -0.54 -15.61 10.30 -296.97 -3.06 -18.67 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.09 8.08 -2.39 -0.02 1.07 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.09 1.11 6.07 -2.39 -0.01 1.10 16 36 H 0.13 1.73 7.36 -2.39 -0.02 1.71 16 37 H 0.14 1.66 6.06 -2.39 -0.01 1.65 16 38 H 0.11 0.97 7.47 -2.39 -0.02 0.96 16 39 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16 42 H 0.07 2.24 7.80 -2.39 -0.02 2.22 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 44 H 0.00 -0.08 6.63 -2.39 -0.02 -0.09 16 45 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 46 H 0.38 21.80 7.55 -92.70 -0.70 21.10 16 47 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 48 H 0.42 4.88 9.06 -74.06 -0.67 4.21 16 Total: -1.00 -91.21 391.80 -0.49 -91.70 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.38 Total: 29.81 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.09 Total: 10.27 kcal Atomic # 7 Polarization: -135.60 SS G_CDS: -7.05 Total: -142.65 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.18 Total: -39.34 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -91.21 -0.49 -91.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483943221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.538 kcal (2) G-P(sol) polarization free energy of solvation -91.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds