Wall clock time and date at job start Tue Mar 31 2020 17:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38093 * 119.58230 * 2 1 4 4 C 1.38786 * 119.28714 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.75401 * 179.97438 * 4 3 2 6 6 C 1.38416 * 118.48615 * 359.97438 * 4 3 2 7 7 C 1.50693 * 120.44266 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47624 * 89.99720 * 7 6 4 9 9 O 1.21281 * 119.99486 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00332 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.65025 * 354.95941 * 10 8 7 12 12 C 1.54907 * 104.83383 * 204.09386 * 11 10 8 13 13 C 1.55153 * 101.57986 * 322.98737 * 12 11 10 14 14 C 1.47022 * 125.64777 * 174.65229 * 10 8 7 15 15 H 1.09001 * 109.88345 * 59.56444 * 14 10 8 16 16 C 1.53003 * 109.88341 * 298.39349 * 14 10 8 17 17 N 1.46498 * 109.47003 * 175.31523 * 16 14 10 18 18 C 1.36937 * 119.99786 * 184.93333 * 17 16 14 19 19 H 1.07997 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47054 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47328 * 119.99851 * 22 20 18 25 25 H 1.48498 * 109.47470 * 240.00406 * 22 20 18 26 26 C 1.38878 * 119.11269 * 0.25262 * 6 4 3 27 27 O 1.35678 * 119.68300 * 179.73021 * 26 6 4 28 28 N 1.31935 * 119.58313 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47342 * 90.00297 * 1 2 3 30 30 H 1.09001 * 109.47254 * 210.00504 * 1 2 3 31 31 H 1.09001 * 109.47480 * 330.00441 * 1 2 3 32 32 H 1.08007 * 120.35381 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.47413 * 270.01863 * 5 4 3 34 34 H 1.08996 * 109.47633 * 30.01989 * 5 4 3 35 35 H 1.09002 * 109.47190 * 150.02114 * 5 4 3 36 36 H 1.08997 * 109.47087 * 329.99593 * 7 6 4 37 37 H 1.09008 * 109.46942 * 209.99585 * 7 6 4 38 38 H 1.09004 * 110.36435 * 322.93111 * 11 10 8 39 39 H 1.08996 * 110.36862 * 85.25066 * 11 10 8 40 40 H 1.08999 * 111.00652 * 81.06235 * 12 11 10 41 41 H 1.08997 * 111.00484 * 204.87853 * 12 11 10 42 42 H 1.09010 * 110.72006 * 153.86423 * 13 12 11 43 43 H 1.09000 * 110.72433 * 277.13547 * 13 12 11 44 44 H 1.08997 * 109.47031 * 295.31816 * 16 14 10 45 45 H 1.08996 * 109.46773 * 55.31614 * 16 14 10 46 46 H 0.97004 * 120.00430 * 4.93297 * 17 16 14 47 47 H 0.97003 * 120.00006 * 179.97438 * 21 20 18 48 48 H 0.96702 * 114.00325 * 89.99544 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1938 -0.0005 5 6 4.3538 2.4848 -0.0011 6 6 4.2304 -0.0262 -0.0005 7 6 5.7362 -0.0854 -0.0017 8 6 6.2394 -0.1045 1.4187 9 8 5.4526 -0.0726 2.3412 10 7 7.5635 -0.1569 1.6639 11 6 8.6205 -0.3049 0.6469 12 6 9.8208 -0.9198 1.4090 13 6 9.7170 -0.2052 2.7823 14 6 8.1936 -0.0696 2.9894 15 1 7.8344 -0.8792 3.6247 16 6 7.8712 1.2815 3.6309 17 7 8.4080 1.3156 4.9936 18 6 8.1539 2.3906 5.8029 19 1 7.5581 3.2134 5.4364 20 6 8.6621 2.4227 7.0943 21 7 9.3887 1.4201 7.5406 22 14 8.3149 3.8888 8.1984 23 1 7.4813 4.8747 7.4646 24 1 7.5908 3.4337 9.4125 25 1 9.5971 4.5240 8.5957 26 6 3.4802 -1.1949 -0.0053 27 8 4.1093 -2.3971 -0.0109 28 7 2.1583 -1.1474 -0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6476 2.1357 -0.0004 33 1 4.5405 2.7961 -1.0290 34 1 3.7791 3.2552 0.5130 35 1 5.3040 2.3371 0.5120 36 1 6.1338 0.7893 -0.5163 37 1 6.0638 -0.9893 -0.5153 38 1 8.2917 -0.9754 -0.1471 39 1 8.8903 0.6678 0.2358 40 1 9.7027 -1.9977 1.5196 41 1 10.7619 -0.6808 0.9138 42 1 10.1628 -0.8143 3.5687 43 1 10.1861 0.7779 2.7419 44 1 8.3226 2.0801 3.0424 45 1 6.7905 1.4199 3.6626 46 1 8.9435 0.5767 5.3226 47 1 9.7441 1.4427 8.4429 48 1 4.2921 -2.7494 0.8709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483943222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:11 Heat of formation + Delta-G solvation = -33.087879 kcal Electronic energy + Delta-G solvation = -29203.455413 eV Core-core repulsion = 25258.711454 eV Total energy + Delta-G solvation = -3944.743959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04644 -39.87689 -37.50158 -37.33838 -34.90043 -34.49933 -32.20330 -31.75811 -31.32816 -30.21833 -28.69998 -27.88349 -26.12604 -25.06235 -23.34157 -22.70447 -22.06753 -21.25491 -20.43043 -18.88263 -18.43944 -17.41359 -17.32217 -16.78248 -16.33551 -15.78792 -15.56949 -14.84302 -14.52838 -14.36607 -14.30973 -13.77451 -13.67935 -13.50000 -13.42122 -13.19263 -13.10245 -12.91858 -12.73420 -12.67064 -12.47576 -12.25409 -12.11295 -12.03122 -11.72249 -11.69779 -11.51261 -11.16771 -10.92562 -10.84709 -10.56942 -10.41321 -10.01478 -9.85615 -9.69502 -9.55402 -9.46601 -8.85491 -8.74690 -8.47356 -6.90198 -5.74898 -3.03105 0.84586 1.07453 2.71277 3.00579 3.29240 3.44792 3.50614 3.52818 3.70044 4.28719 4.43428 4.49864 4.58156 4.63613 4.68010 4.68477 4.93249 5.00178 5.06037 5.16909 5.20376 5.22508 5.33271 5.35659 5.37822 5.38568 5.48172 5.55994 5.58339 5.60238 5.69865 5.78486 5.87293 5.90898 5.92519 6.02887 6.05307 6.13734 6.16166 6.39240 6.41101 6.52509 6.80636 6.94471 7.34651 7.64144 7.73259 7.83203 8.28024 8.44144 9.55155 10.11450 10.47014 11.48233 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003197 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.363822 B = 8755.292166 C =10270.302921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.150 3.850 3 C -0.183 4.183 4 C -0.009 4.009 5 C -0.120 4.120 6 C -0.135 4.135 7 C -0.092 4.092 8 C 0.527 3.473 9 O -0.525 6.525 10 N -0.612 5.612 11 C 0.098 3.902 12 C -0.134 4.134 13 C -0.122 4.122 14 C 0.130 3.870 15 H 0.076 0.924 16 C 0.148 3.852 17 N -0.728 5.728 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.331 3.669 27 O -0.484 6.484 28 N -0.508 5.508 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.014 0.986 45 H 0.034 0.966 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 -3.862 -22.097 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.013 3.987 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.177 4.177 6 C -0.139 4.139 7 C -0.132 4.132 8 C 0.315 3.685 9 O -0.400 6.400 10 N -0.347 5.347 11 C -0.025 4.025 12 C -0.172 4.172 13 C -0.160 4.160 14 C 0.027 3.973 15 H 0.094 0.906 16 C 0.020 3.980 17 N -0.372 5.372 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.152 3.848 27 O -0.291 6.291 28 N -0.228 5.228 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.032 0.968 45 H 0.052 0.948 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.990 -4.434 -22.152 24.314 hybrid contribution 0.646 1.137 1.306 1.848 sum -8.344 -3.297 -20.846 22.694 Atomic orbital electron populations 1.20728 0.88568 1.03694 1.03055 1.20955 0.96689 0.87201 0.93891 1.21795 0.93903 0.99383 1.05184 1.20064 0.93727 0.94858 0.93007 1.20881 1.00540 0.93557 1.02701 1.20103 0.95417 0.92875 1.05479 1.20516 0.91764 1.05544 0.95419 1.20066 0.80790 0.76843 0.90837 1.90777 1.54246 1.48900 1.46096 1.48555 1.04873 1.72583 1.08710 1.22351 0.88095 1.00610 0.91445 1.22789 0.97527 1.00326 0.96534 1.22684 0.94586 1.01985 0.96744 1.21830 0.92279 0.99834 0.83329 0.90586 1.20913 0.97613 0.92270 0.87207 1.42206 1.62584 1.23268 1.09182 1.19252 1.26443 0.97074 0.93772 0.91253 1.24722 1.00714 0.98197 0.97400 1.69664 1.39767 1.31436 1.17446 0.86109 0.77323 0.81961 0.80781 1.20584 1.21838 1.21880 1.18785 0.86605 0.84819 0.94557 1.84660 1.76558 1.33578 1.34349 1.66966 1.09473 1.30734 1.15592 0.90352 0.90374 0.90450 0.84459 0.90239 0.90439 0.90735 0.87798 0.87408 0.90778 0.91286 0.90766 0.89942 0.89757 0.89931 0.96822 0.94799 0.78312 0.93597 0.73909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.17 36.00 0.37 -0.49 16 2 C 0.15 1.79 6.78 -82.60 -0.56 1.23 16 3 C -0.18 -2.01 9.44 -39.43 -0.37 -2.39 16 4 C -0.01 -0.11 5.91 -104.36 -0.62 -0.72 16 5 C -0.12 -1.17 9.28 36.00 0.33 -0.83 16 6 C -0.13 -1.73 4.40 -104.32 -0.46 -2.19 16 7 C -0.09 -1.01 4.05 -29.04 -0.12 -1.13 16 8 C 0.53 7.79 7.25 -10.99 -0.08 7.71 16 9 O -0.52 -10.18 15.22 5.56 0.08 -10.10 16 10 N -0.61 -8.49 3.06 -163.01 -0.50 -8.99 16 11 C 0.10 0.95 6.65 -2.53 -0.02 0.93 16 12 C -0.13 -1.31 7.09 -24.59 -0.17 -1.49 16 13 C -0.12 -1.71 6.09 -24.89 -0.15 -1.86 16 14 C 0.13 2.21 2.92 -66.94 -0.20 2.02 16 15 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 16 C 0.15 3.19 5.65 -4.04 -0.02 3.17 16 17 N -0.73 -18.95 5.45 -59.91 -0.33 -19.27 16 18 C -0.23 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 22 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.33 4.59 7.72 -17.12 -0.13 4.46 16 27 O -0.48 -5.96 12.62 -18.73 -0.24 -6.20 16 28 N -0.51 -7.24 10.30 -9.55 -0.10 -7.34 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 36 H 0.10 0.92 6.81 -51.93 -0.35 0.57 16 37 H 0.11 1.01 7.16 -51.92 -0.37 0.64 16 38 H 0.07 0.55 7.51 -51.93 -0.39 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 43 H 0.08 1.24 7.77 -51.93 -0.40 0.84 16 44 H 0.01 0.30 8.03 -51.93 -0.42 -0.12 16 45 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 46 H 0.38 10.27 7.45 -40.82 -0.30 9.97 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.40 3.87 9.06 45.56 0.41 4.29 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -36.66 392.24 -8.63 -45.29 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.72 Total: 9.67 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.45 Total: 0.98 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.20 Total: -63.41 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.15 Total: -16.30 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.66 -8.63 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483943222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.197 kcal (2) G-P(sol) polarization free energy of solvation -36.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds