Wall clock time and date at job start Tue Mar 31 2020 17:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38093 * 119.58230 * 2 1 4 4 C 1.38786 * 119.28714 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.75401 * 179.97438 * 4 3 2 6 6 C 1.38416 * 118.48615 * 359.97438 * 4 3 2 7 7 C 1.50693 * 120.44266 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47624 * 89.99720 * 7 6 4 9 9 O 1.21281 * 119.99486 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00332 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.65025 * 354.95941 * 10 8 7 12 12 C 1.54907 * 104.83383 * 204.09386 * 11 10 8 13 13 C 1.55153 * 101.57986 * 322.98737 * 12 11 10 14 14 C 1.47022 * 125.64777 * 174.65229 * 10 8 7 15 15 H 1.09001 * 109.88345 * 59.56444 * 14 10 8 16 16 C 1.53003 * 109.88341 * 298.39349 * 14 10 8 17 17 N 1.46498 * 109.47003 * 175.31523 * 16 14 10 18 18 C 1.36937 * 119.99786 * 184.93333 * 17 16 14 19 19 H 1.07997 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47054 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47328 * 119.99851 * 22 20 18 25 25 H 1.48498 * 109.47470 * 240.00406 * 22 20 18 26 26 C 1.38878 * 119.11269 * 0.25262 * 6 4 3 27 27 O 1.35678 * 119.68300 * 179.73021 * 26 6 4 28 28 N 1.31935 * 119.58313 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47342 * 90.00297 * 1 2 3 30 30 H 1.09001 * 109.47254 * 210.00504 * 1 2 3 31 31 H 1.09001 * 109.47480 * 330.00441 * 1 2 3 32 32 H 1.08007 * 120.35381 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.47413 * 270.01863 * 5 4 3 34 34 H 1.08996 * 109.47633 * 30.01989 * 5 4 3 35 35 H 1.09002 * 109.47190 * 150.02114 * 5 4 3 36 36 H 1.08997 * 109.47087 * 329.99593 * 7 6 4 37 37 H 1.09008 * 109.46942 * 209.99585 * 7 6 4 38 38 H 1.09004 * 110.36435 * 322.93111 * 11 10 8 39 39 H 1.08996 * 110.36862 * 85.25066 * 11 10 8 40 40 H 1.08999 * 111.00652 * 81.06235 * 12 11 10 41 41 H 1.08997 * 111.00484 * 204.87853 * 12 11 10 42 42 H 1.09010 * 110.72006 * 153.86423 * 13 12 11 43 43 H 1.09000 * 110.72433 * 277.13547 * 13 12 11 44 44 H 1.08997 * 109.47031 * 295.31816 * 16 14 10 45 45 H 1.08996 * 109.46773 * 55.31614 * 16 14 10 46 46 H 0.97004 * 120.00430 * 4.93297 * 17 16 14 47 47 H 0.97003 * 120.00006 * 179.97438 * 21 20 18 48 48 H 0.96702 * 114.00325 * 89.99544 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1938 -0.0005 5 6 4.3538 2.4848 -0.0011 6 6 4.2304 -0.0262 -0.0005 7 6 5.7362 -0.0854 -0.0017 8 6 6.2394 -0.1045 1.4187 9 8 5.4526 -0.0726 2.3412 10 7 7.5635 -0.1569 1.6639 11 6 8.6205 -0.3049 0.6469 12 6 9.8208 -0.9198 1.4090 13 6 9.7170 -0.2052 2.7823 14 6 8.1936 -0.0696 2.9894 15 1 7.8344 -0.8792 3.6247 16 6 7.8712 1.2815 3.6309 17 7 8.4080 1.3156 4.9936 18 6 8.1539 2.3906 5.8029 19 1 7.5581 3.2134 5.4364 20 6 8.6621 2.4227 7.0943 21 7 9.3887 1.4201 7.5406 22 14 8.3149 3.8888 8.1984 23 1 7.4813 4.8747 7.4646 24 1 7.5908 3.4337 9.4125 25 1 9.5971 4.5240 8.5957 26 6 3.4802 -1.1949 -0.0053 27 8 4.1093 -2.3971 -0.0109 28 7 2.1583 -1.1474 -0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6476 2.1357 -0.0004 33 1 4.5405 2.7961 -1.0290 34 1 3.7791 3.2552 0.5130 35 1 5.3040 2.3371 0.5120 36 1 6.1338 0.7893 -0.5163 37 1 6.0638 -0.9893 -0.5153 38 1 8.2917 -0.9754 -0.1471 39 1 8.8903 0.6678 0.2358 40 1 9.7027 -1.9977 1.5196 41 1 10.7619 -0.6808 0.9138 42 1 10.1628 -0.8143 3.5687 43 1 10.1861 0.7779 2.7419 44 1 8.3226 2.0801 3.0424 45 1 6.7905 1.4199 3.6626 46 1 8.9435 0.5767 5.3226 47 1 9.7441 1.4427 8.4429 48 1 4.2921 -2.7494 0.8709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483943222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:10 Heat of formation + Delta-G solvation = -61.474172 kcal Electronic energy + Delta-G solvation = -29204.686335 eV Core-core repulsion = 25258.711454 eV Total energy + Delta-G solvation = -3945.974881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98912 -40.99185 -38.68527 -38.26646 -36.44079 -35.78391 -33.61325 -32.97250 -32.60726 -31.16713 -30.18971 -28.68158 -27.00318 -26.74036 -24.81139 -23.87369 -23.34559 -22.17433 -21.54319 -20.16977 -19.37672 -19.10059 -18.33300 -18.12773 -17.47445 -16.72655 -16.66906 -16.41059 -15.89725 -15.66858 -15.17754 -15.11857 -15.06299 -14.92508 -14.49795 -14.16895 -14.07861 -13.88398 -13.83049 -13.71259 -13.60575 -13.24332 -13.12646 -12.94907 -12.90470 -12.82388 -12.75828 -12.54194 -12.51791 -12.17846 -12.03824 -11.92360 -11.76527 -11.58205 -11.08217 -10.93743 -10.46851 -10.38374 -9.68032 -9.63779 -9.07280 -8.00304 -5.30093 -0.05323 0.18025 1.43320 1.45266 1.55051 1.58265 1.92718 2.39885 2.53249 2.82251 3.32534 3.42717 3.51023 3.64807 3.66089 3.81020 3.85867 3.91950 3.98530 4.12257 4.23914 4.30548 4.35219 4.37643 4.41406 4.51256 4.52468 4.62537 4.69036 4.75162 4.77100 4.81953 4.84411 4.94810 4.98266 5.02640 5.08881 5.14554 5.15492 5.18804 5.29282 5.35008 5.40907 5.46335 5.61524 6.21467 6.45708 6.56227 6.92981 7.14798 7.28055 7.99612 8.26547 9.23162 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003197 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.363822 B = 8755.292166 C =10270.302921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 C -0.186 4.186 4 C -0.021 4.021 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.077 4.077 8 C 0.524 3.476 9 O -0.581 6.581 10 N -0.610 5.610 11 C 0.092 3.908 12 C -0.119 4.119 13 C -0.119 4.119 14 C 0.137 3.863 15 H 0.046 0.954 16 C 0.157 3.843 17 N -0.737 5.737 18 C -0.249 4.249 19 H 0.068 0.932 20 C -0.071 4.071 21 N -0.966 5.966 22 Si 0.975 3.025 23 H -0.269 1.269 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.310 3.690 27 O -0.488 6.488 28 N -0.539 5.539 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.020 0.980 45 H 0.003 0.997 46 H 0.376 0.624 47 H 0.254 0.746 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.655 -2.737 -24.438 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.206 4.206 4 C -0.029 4.029 5 C -0.173 4.173 6 C -0.155 4.155 7 C -0.117 4.117 8 C 0.314 3.686 9 O -0.461 6.461 10 N -0.344 5.344 11 C -0.029 4.029 12 C -0.157 4.157 13 C -0.158 4.158 14 C 0.033 3.967 15 H 0.064 0.936 16 C 0.029 3.971 17 N -0.381 5.381 18 C -0.381 4.381 19 H 0.086 0.914 20 C -0.263 4.263 21 N -0.616 5.616 22 Si 0.804 3.196 23 H -0.194 1.194 24 H -0.219 1.219 25 H -0.212 1.212 26 C 0.131 3.869 27 O -0.297 6.297 28 N -0.260 5.260 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.184 0.816 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.021 0.979 46 H 0.209 0.791 47 H 0.062 0.938 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -8.668 -3.312 -24.554 26.249 hybrid contribution 0.496 0.786 2.027 2.230 sum -8.171 -2.527 -22.527 24.096 Atomic orbital electron populations 1.20822 0.86302 1.04324 1.04297 1.21597 0.98348 0.87061 0.93216 1.22158 0.93913 1.00290 1.04214 1.20465 0.94496 0.95451 0.92441 1.20917 0.99411 0.92639 1.04355 1.20307 0.96323 0.92936 1.05919 1.20501 0.90753 1.07737 0.92677 1.20796 0.80500 0.75403 0.91898 1.90751 1.55772 1.51443 1.48111 1.48645 1.05589 1.71796 1.08343 1.22727 0.86586 1.02585 0.90972 1.22808 0.99112 1.00287 0.93500 1.22594 0.91650 1.02007 0.99514 1.21516 0.94701 0.95844 0.84651 0.93576 1.20898 0.95283 0.95311 0.85615 1.42344 1.62587 1.22408 1.10718 1.19579 1.26193 0.97737 0.94588 0.91436 1.25568 1.00848 1.01131 0.98774 1.69810 1.40776 1.33299 1.17712 0.85057 0.77320 0.78797 0.78473 1.19379 1.21932 1.21205 1.19073 0.86944 0.85482 0.95373 1.84617 1.76492 1.33469 1.35085 1.66992 1.09983 1.32162 1.16864 0.88680 0.91152 0.88370 0.81611 0.87337 0.89892 0.92332 0.85065 0.85321 0.87291 0.89432 0.89938 0.86917 0.90729 0.90909 0.96242 0.97919 0.79132 0.93758 0.73116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.17 71.23 0.72 -0.82 16 2 C 0.13 3.15 6.78 42.51 0.29 3.44 16 3 C -0.19 -3.87 9.44 22.37 0.21 -3.66 16 4 C -0.02 -0.47 5.91 -19.69 -0.12 -0.59 16 5 C -0.12 -2.05 9.28 71.23 0.66 -1.39 16 6 C -0.15 -3.77 4.40 -19.67 -0.09 -3.86 16 7 C -0.08 -1.56 4.05 29.10 0.12 -1.44 16 8 C 0.52 15.36 7.25 87.66 0.64 16.00 16 9 O -0.58 -23.53 15.22 -3.03 -0.05 -23.58 16 10 N -0.61 -16.37 3.06 -788.03 -2.41 -18.78 16 11 C 0.09 1.47 6.65 86.85 0.58 2.05 16 12 C -0.12 -1.97 7.09 31.98 0.23 -1.75 16 13 C -0.12 -3.29 6.09 31.79 0.19 -3.09 16 14 C 0.14 4.77 2.92 45.35 0.13 4.90 16 15 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.16 6.99 5.65 86.38 0.49 7.48 16 17 N -0.74 -39.80 5.45 -343.46 -1.87 -41.67 16 18 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 19 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 21 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 22 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 C 0.31 8.65 7.72 84.78 0.65 9.30 16 27 O -0.49 -12.13 12.62 -89.95 -1.14 -13.26 16 28 N -0.54 -15.56 10.30 -296.97 -3.06 -18.62 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.07 8.08 -2.39 -0.02 1.05 16 32 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.06 1.22 6.55 -2.39 -0.02 1.21 16 36 H 0.13 1.91 6.81 -2.39 -0.02 1.90 16 37 H 0.13 2.05 7.16 -2.38 -0.02 2.04 16 38 H 0.11 1.07 7.51 -2.39 -0.02 1.05 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.07 2.15 7.77 -2.39 -0.02 2.13 16 44 H 0.02 0.85 8.03 -2.39 -0.02 0.84 16 45 H 0.00 0.14 6.90 -2.39 -0.02 0.12 16 46 H 0.38 21.05 7.45 -92.71 -0.69 20.36 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.41 8.27 9.06 -74.06 -0.67 7.60 16 Total: -1.00 -83.44 392.24 -0.58 -84.02 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.37 Total: 33.27 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.01 Total: 8.96 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -7.06 Total: -138.85 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.18 Total: -36.84 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -83.44 -0.58 -84.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483943222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.543 kcal (2) G-P(sol) polarization free energy of solvation -83.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds