Wall clock time and date at job start Tue Mar 31 2020 17:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38352 * 119.40726 * 2 1 4 4 C 1.38337 * 119.45953 * 179.72139 * 3 2 1 5 5 C 1.50703 * 120.82784 * 180.28102 * 4 3 2 6 6 C 1.39982 * 118.34846 * 0.55943 * 4 3 2 7 7 C 1.47527 * 120.60049 * 179.71170 * 6 4 3 8 8 O 1.21592 * 119.99695 * 269.73219 * 7 6 4 9 9 N 1.34771 * 119.99709 * 89.72977 * 7 6 4 10 10 C 1.46932 * 120.62744 * 180.02562 * 9 7 6 11 11 C 1.53192 * 108.77844 * 126.40951 * 10 9 7 12 12 C 1.53045 * 109.30943 * 54.63390 * 11 10 9 13 13 C 1.53003 * 109.45779 * 178.62811 * 12 11 10 14 14 N 1.46490 * 109.46384 * 58.65283 * 12 11 10 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.53044 * 109.52582 * 298.63661 * 12 11 10 24 24 C 1.46920 * 120.63299 * 0.02562 * 9 7 6 25 25 C 1.40285 * 118.80673 * 359.44714 * 6 4 3 26 26 O 1.35420 * 119.80437 * 180.26796 * 25 6 4 27 27 N 1.31885 * 119.40577 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47005 * 269.97478 * 1 2 3 29 29 H 1.08995 * 109.47180 * 29.97658 * 1 2 3 30 30 H 1.09004 * 109.47120 * 149.97613 * 1 2 3 31 31 H 1.08009 * 120.26822 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46660 * 270.29187 * 5 4 3 33 33 H 1.08999 * 109.46919 * 30.28861 * 5 4 3 34 34 H 1.09003 * 109.47180 * 150.29143 * 5 4 3 35 35 H 1.08996 * 109.58846 * 6.61888 * 10 9 7 36 36 H 1.09003 * 109.57689 * 246.19391 * 10 9 7 37 37 H 1.08995 * 109.49437 * 294.68286 * 11 10 9 38 38 H 1.08996 * 109.52274 * 174.59662 * 11 10 9 39 39 H 1.08997 * 109.46965 * 300.02851 * 13 12 11 40 40 H 1.09002 * 109.46920 * 60.02578 * 13 12 11 41 41 H 1.08994 * 109.46997 * 180.02562 * 13 12 11 42 42 H 0.97000 * 120.00577 * 359.97352 * 14 12 11 43 43 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 44 44 H 1.09000 * 109.49970 * 181.31217 * 23 12 11 45 45 H 1.09001 * 109.50257 * 301.41366 * 23 12 11 46 46 H 1.08998 * 109.58779 * 353.38124 * 24 9 7 47 47 H 1.09004 * 109.58787 * 113.65837 * 24 9 7 48 48 H 0.96696 * 114.00177 * 89.99742 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0059 5 6 4.3408 2.5013 0.0124 6 6 4.2356 -0.0248 -0.0004 7 6 5.7097 -0.0814 -0.0010 8 8 6.3168 -0.1043 -1.0543 9 7 6.3835 -0.1075 1.1659 10 6 7.8517 -0.1633 1.1815 11 6 8.3796 0.9843 2.0482 12 6 7.7330 0.9112 3.4334 13 6 8.2836 2.0357 4.3128 14 7 8.0393 -0.3830 4.0474 15 6 7.5640 -0.6776 5.2973 16 1 6.9629 0.0442 5.8304 17 6 7.8547 -1.9038 5.8794 18 7 8.5877 -2.7832 5.2300 19 14 7.2055 -2.3058 7.5843 20 1 7.6535 -3.6662 7.9764 21 1 7.7264 -1.3136 8.5588 22 1 5.7214 -2.2568 7.5732 23 6 6.2163 1.0655 3.2988 24 6 5.6639 -0.0808 2.4466 25 6 3.4758 -1.2041 -0.0005 26 8 4.0991 -2.4063 -0.0010 27 7 2.1546 -1.1489 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6410 2.1376 0.0004 32 1 4.5265 2.8187 -1.0137 33 1 3.7621 3.2662 0.5302 34 1 5.2915 2.3555 0.5253 35 1 8.2321 -0.0588 0.1655 36 1 8.1765 -1.1162 1.5995 37 1 8.1314 1.9371 1.5806 38 1 9.4617 0.8983 2.1468 39 1 9.3638 1.9258 4.4091 40 1 8.0557 2.9988 3.8561 41 1 7.8236 1.9836 5.2996 42 1 8.5789 -1.0315 3.5686 43 1 8.9244 -2.5746 4.3446 44 1 5.7585 1.0367 4.2875 45 1 5.9885 2.0176 2.8194 46 1 4.6009 0.0781 2.2652 47 1 5.8082 -1.0279 2.9666 48 1 4.2805 -2.7557 0.8822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484922300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:06 Heat of formation + Delta-G solvation = -29.865724 kcal Electronic energy + Delta-G solvation = -30553.435688 eV Core-core repulsion = 26608.831452 eV Total energy + Delta-G solvation = -3944.604236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18773 -39.63421 -37.86338 -37.43446 -34.73391 -34.33815 -32.64918 -31.96073 -30.92878 -29.07053 -28.52644 -27.88226 -27.41704 -24.12704 -23.57710 -23.03745 -22.69027 -21.60999 -20.02514 -18.61169 -18.50502 -17.51403 -17.21767 -16.99464 -16.23746 -15.62881 -15.21561 -14.74246 -14.59645 -14.29009 -14.18955 -13.74900 -13.68120 -13.62129 -13.51618 -13.24971 -13.17282 -12.90522 -12.64908 -12.62363 -12.34994 -12.16404 -11.99707 -11.75172 -11.66974 -11.45478 -11.35537 -10.90914 -10.85587 -10.62126 -10.37077 -10.15136 -10.03413 -9.93667 -9.68173 -9.46963 -9.15484 -9.02076 -8.89016 -8.38492 -7.10144 -6.14284 -3.15706 0.63977 0.92262 2.61143 3.04376 3.27728 3.46355 3.48214 3.48741 3.66713 4.24941 4.31381 4.50915 4.60276 4.79267 4.96938 5.06475 5.09377 5.14921 5.17545 5.27505 5.30138 5.33652 5.37265 5.42561 5.49024 5.58792 5.61690 5.64519 5.74185 5.79124 5.87255 5.90617 5.95498 6.02700 6.11205 6.24620 6.26217 6.29673 6.36188 6.42543 6.59528 6.68496 6.87178 6.93693 7.33055 7.55355 7.71272 7.75387 8.22590 8.69812 9.15698 10.02393 10.17957 11.33120 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.004079 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.571048 B = 6862.907825 C = 7625.867653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.164 3.836 3 C -0.188 4.188 4 C 0.009 3.991 5 C -0.123 4.123 6 C -0.190 4.190 7 C 0.573 3.427 8 O -0.538 6.538 9 N -0.591 5.591 10 C 0.117 3.883 11 C -0.131 4.131 12 C 0.204 3.796 13 C -0.149 4.149 14 N -0.728 5.728 15 C -0.325 4.325 16 H 0.064 0.936 17 C -0.042 4.042 18 N -0.943 5.943 19 Si 1.074 2.926 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.296 1.296 23 C -0.131 4.131 24 C 0.117 3.883 25 C 0.355 3.645 26 O -0.474 6.474 27 N -0.505 5.505 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.367 0.633 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.088 0.912 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 11.194 -8.638 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.207 4.207 4 C 0.001 3.999 5 C -0.179 4.179 6 C -0.197 4.197 7 C 0.359 3.641 8 O -0.415 6.415 9 N -0.323 5.323 10 C -0.005 4.005 11 C -0.169 4.169 12 C 0.112 3.888 13 C -0.208 4.208 14 N -0.372 5.372 15 C -0.456 4.456 16 H 0.082 0.918 17 C -0.240 4.240 18 N -0.588 5.588 19 Si 0.905 3.095 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.224 1.224 23 C -0.172 4.172 24 C -0.005 4.005 25 C 0.175 3.825 26 O -0.282 6.282 27 N -0.225 5.225 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.726 9.374 -8.445 17.920 hybrid contribution 0.694 1.585 -0.627 1.840 sum -12.032 10.959 -9.072 18.633 Atomic orbital electron populations 1.20787 0.88199 1.03782 1.03531 1.21155 0.96945 0.87079 0.92189 1.21746 0.93571 0.99573 1.05856 1.20230 0.93647 0.94146 0.91890 1.20936 1.00334 0.93101 1.03570 1.20809 0.95174 0.94120 1.09552 1.17799 0.86006 0.76430 0.83874 1.90775 1.69144 1.50572 1.31057 1.48100 1.07342 1.71204 1.05674 1.21593 0.78482 0.99542 1.00926 1.22118 1.00696 0.98116 0.95995 1.19455 0.91506 0.87709 0.90124 1.22193 1.01039 0.96857 1.00715 1.42512 1.63098 1.13505 1.18040 1.19895 1.29907 1.02029 0.93753 0.91775 1.25641 1.00147 0.92831 1.05407 1.70898 1.37079 1.36422 1.14387 0.83312 0.75176 0.76083 0.74880 1.21133 1.22388 1.22401 1.22266 0.99150 0.96007 0.99729 1.21692 0.94175 1.01777 0.82856 1.18989 0.86306 0.84560 0.92630 1.84716 1.76607 1.32568 1.34295 1.67051 1.09111 1.30403 1.15969 0.89855 0.90313 0.90162 0.83891 0.89762 0.90163 0.90571 0.89604 0.90724 0.91760 0.90711 0.93213 0.94545 0.92444 0.79898 0.93415 0.90528 0.93286 0.91912 0.89337 0.73389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.16 36.01 0.37 -0.42 16 2 C 0.16 1.85 6.78 -82.53 -0.56 1.29 16 3 C -0.19 -1.90 9.41 -39.50 -0.37 -2.28 16 4 C 0.01 0.11 5.80 -103.93 -0.60 -0.50 16 5 C -0.12 -1.24 9.69 36.01 0.35 -0.89 16 6 C -0.19 -2.84 3.66 -104.69 -0.38 -3.22 16 7 C 0.57 9.66 5.30 -12.48 -0.07 9.59 16 8 O -0.54 -10.78 16.52 5.28 0.09 -10.69 16 9 N -0.59 -9.43 2.97 -174.03 -0.52 -9.94 16 10 C 0.12 1.89 6.16 -3.71 -0.02 1.87 16 11 C -0.13 -2.01 4.96 -26.61 -0.13 -2.14 16 12 C 0.20 3.55 0.74 -131.78 -0.10 3.45 16 13 C -0.15 -2.52 8.44 37.16 0.31 -2.20 16 14 N -0.73 -15.87 4.14 -47.19 -0.20 -16.07 16 15 C -0.32 -8.10 8.68 -15.06 -0.13 -8.23 16 16 H 0.06 1.59 6.70 -52.49 -0.35 1.24 16 17 C -0.04 -1.14 5.50 -17.43 -0.10 -1.23 16 18 N -0.94 -27.41 13.70 55.49 0.76 -26.65 16 19 Si 1.07 24.59 29.92 -169.99 -5.09 19.51 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.30 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.13 -2.10 4.70 -26.63 -0.13 -2.22 16 24 C 0.12 1.86 6.08 -3.74 -0.02 1.83 16 25 C 0.35 5.44 7.77 -16.61 -0.13 5.31 16 26 O -0.47 -7.27 13.01 -17.95 -0.23 -7.50 16 27 N -0.51 -7.23 10.28 -9.21 -0.09 -7.32 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.08 0.88 7.19 -51.93 -0.37 0.51 16 35 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 36 H 0.07 1.32 6.94 -51.93 -0.36 0.96 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 1.05 7.27 -51.93 -0.38 0.68 16 42 H 0.37 8.50 5.29 -40.82 -0.22 8.29 16 43 H 0.25 7.29 6.77 -40.82 -0.28 7.02 16 44 H 0.08 1.32 7.31 -51.93 -0.38 0.94 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.91 6.22 -51.93 -0.32 0.58 16 47 H 0.09 1.65 7.75 -51.93 -0.40 1.25 16 48 H 0.41 4.75 9.06 45.56 0.41 5.16 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -32.79 382.56 -7.68 -40.46 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.45 Total: 12.43 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.71 Total: 0.01 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.05 Total: -59.99 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.15 Total: -18.19 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.09 Total: 19.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.79 -7.68 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484922300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.596 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds