Wall clock time and date at job start Tue Mar 31 2020 17:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38352 * 119.40726 * 2 1 4 4 C 1.38337 * 119.45953 * 179.72139 * 3 2 1 5 5 C 1.50703 * 120.82784 * 180.28102 * 4 3 2 6 6 C 1.39982 * 118.34846 * 0.55943 * 4 3 2 7 7 C 1.47527 * 120.60049 * 179.71170 * 6 4 3 8 8 O 1.21592 * 119.99695 * 269.73219 * 7 6 4 9 9 N 1.34771 * 119.99709 * 89.72977 * 7 6 4 10 10 C 1.46932 * 120.62744 * 180.02562 * 9 7 6 11 11 C 1.53192 * 108.77844 * 126.40951 * 10 9 7 12 12 C 1.53045 * 109.30943 * 54.63390 * 11 10 9 13 13 C 1.53003 * 109.45779 * 178.62811 * 12 11 10 14 14 N 1.46490 * 109.46384 * 58.65283 * 12 11 10 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.53044 * 109.52582 * 298.63661 * 12 11 10 24 24 C 1.46920 * 120.63299 * 0.02562 * 9 7 6 25 25 C 1.40285 * 118.80673 * 359.44714 * 6 4 3 26 26 O 1.35420 * 119.80437 * 180.26796 * 25 6 4 27 27 N 1.31885 * 119.40577 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47005 * 269.97478 * 1 2 3 29 29 H 1.08995 * 109.47180 * 29.97658 * 1 2 3 30 30 H 1.09004 * 109.47120 * 149.97613 * 1 2 3 31 31 H 1.08009 * 120.26822 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46660 * 270.29187 * 5 4 3 33 33 H 1.08999 * 109.46919 * 30.28861 * 5 4 3 34 34 H 1.09003 * 109.47180 * 150.29143 * 5 4 3 35 35 H 1.08996 * 109.58846 * 6.61888 * 10 9 7 36 36 H 1.09003 * 109.57689 * 246.19391 * 10 9 7 37 37 H 1.08995 * 109.49437 * 294.68286 * 11 10 9 38 38 H 1.08996 * 109.52274 * 174.59662 * 11 10 9 39 39 H 1.08997 * 109.46965 * 300.02851 * 13 12 11 40 40 H 1.09002 * 109.46920 * 60.02578 * 13 12 11 41 41 H 1.08994 * 109.46997 * 180.02562 * 13 12 11 42 42 H 0.97000 * 120.00577 * 359.97352 * 14 12 11 43 43 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 44 44 H 1.09000 * 109.49970 * 181.31217 * 23 12 11 45 45 H 1.09001 * 109.50257 * 301.41366 * 23 12 11 46 46 H 1.08998 * 109.58779 * 353.38124 * 24 9 7 47 47 H 1.09004 * 109.58787 * 113.65837 * 24 9 7 48 48 H 0.96696 * 114.00177 * 89.99742 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0059 5 6 4.3408 2.5013 0.0124 6 6 4.2356 -0.0248 -0.0004 7 6 5.7097 -0.0814 -0.0010 8 8 6.3168 -0.1043 -1.0543 9 7 6.3835 -0.1075 1.1659 10 6 7.8517 -0.1633 1.1815 11 6 8.3796 0.9843 2.0482 12 6 7.7330 0.9112 3.4334 13 6 8.2836 2.0357 4.3128 14 7 8.0393 -0.3830 4.0474 15 6 7.5640 -0.6776 5.2973 16 1 6.9629 0.0442 5.8304 17 6 7.8547 -1.9038 5.8794 18 7 8.5877 -2.7832 5.2300 19 14 7.2055 -2.3058 7.5843 20 1 7.6535 -3.6662 7.9764 21 1 7.7264 -1.3136 8.5588 22 1 5.7214 -2.2568 7.5732 23 6 6.2163 1.0655 3.2988 24 6 5.6639 -0.0808 2.4466 25 6 3.4758 -1.2041 -0.0005 26 8 4.0991 -2.4063 -0.0010 27 7 2.1546 -1.1489 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6410 2.1376 0.0004 32 1 4.5265 2.8187 -1.0137 33 1 3.7621 3.2662 0.5302 34 1 5.2915 2.3555 0.5253 35 1 8.2321 -0.0588 0.1655 36 1 8.1765 -1.1162 1.5995 37 1 8.1314 1.9371 1.5806 38 1 9.4617 0.8983 2.1468 39 1 9.3638 1.9258 4.4091 40 1 8.0557 2.9988 3.8561 41 1 7.8236 1.9836 5.2996 42 1 8.5789 -1.0315 3.5686 43 1 8.9244 -2.5746 4.3446 44 1 5.7585 1.0367 4.2875 45 1 5.9885 2.0176 2.8194 46 1 4.6009 0.0781 2.2652 47 1 5.8082 -1.0279 2.9666 48 1 4.2805 -2.7557 0.8822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484922300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:05 Heat of formation + Delta-G solvation = -54.271755 kcal Electronic energy + Delta-G solvation = -30554.494013 eV Core-core repulsion = 26608.831452 eV Total energy + Delta-G solvation = -3945.662561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27881 -40.87412 -39.28238 -38.50446 -36.26767 -35.32954 -34.36382 -32.89561 -32.21046 -30.64746 -29.80384 -28.89798 -28.36521 -25.79127 -24.94210 -24.38542 -23.88239 -22.59337 -21.29906 -20.04327 -19.60288 -18.95033 -18.65730 -18.21489 -17.50269 -16.84550 -16.71868 -15.96880 -15.88130 -15.62228 -15.38273 -15.17926 -15.09432 -14.79066 -14.44399 -14.26606 -14.19117 -14.02990 -13.94908 -13.68090 -13.29120 -13.24423 -13.02344 -12.85312 -12.81544 -12.74192 -12.65310 -12.60744 -12.29742 -12.20759 -11.93624 -11.78263 -11.50617 -11.36865 -10.96211 -10.85433 -10.62313 -10.52456 -9.86615 -9.78776 -8.99133 -8.24135 -5.18436 -0.32538 0.00089 1.30841 1.60701 1.68834 1.82054 1.84286 2.29038 2.52379 2.76346 3.20409 3.50645 3.51221 3.53335 3.66462 3.82004 3.87260 3.93913 4.05727 4.13930 4.17099 4.25874 4.29652 4.47621 4.52290 4.54684 4.56982 4.63215 4.66689 4.77869 4.81131 4.91404 4.93656 4.95198 4.98035 4.99326 5.06835 5.10204 5.16412 5.21514 5.25774 5.49038 5.49966 5.56488 5.76154 6.22535 6.32559 6.61718 6.76716 6.90955 7.20855 8.11844 8.24714 9.27142 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.004079 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.571048 B = 6862.907825 C = 7625.867653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.158 3.842 3 C -0.172 4.172 4 C 0.006 3.994 5 C -0.121 4.121 6 C -0.215 4.215 7 C 0.578 3.422 8 O -0.577 6.577 9 N -0.585 5.585 10 C 0.118 3.882 11 C -0.120 4.120 12 C 0.194 3.806 13 C -0.142 4.142 14 N -0.736 5.736 15 C -0.299 4.299 16 H 0.069 0.931 17 C -0.106 4.106 18 N -0.983 5.983 19 Si 1.115 2.885 20 H -0.303 1.303 21 H -0.282 1.282 22 H -0.279 1.279 23 C -0.124 4.124 24 C 0.130 3.870 25 C 0.332 3.668 26 O -0.494 6.494 27 N -0.530 5.530 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.189 0.811 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.357 0.643 43 H 0.242 0.758 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.053 0.947 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.069 14.742 -8.610 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.020 3.980 3 C -0.192 4.192 4 C -0.002 4.002 5 C -0.178 4.178 6 C -0.222 4.222 7 C 0.366 3.634 8 O -0.457 6.457 9 N -0.316 5.316 10 C -0.004 4.004 11 C -0.158 4.158 12 C 0.104 3.896 13 C -0.201 4.201 14 N -0.379 5.379 15 C -0.431 4.431 16 H 0.087 0.913 17 C -0.297 4.297 18 N -0.633 5.633 19 Si 0.943 3.057 20 H -0.230 1.230 21 H -0.209 1.209 22 H -0.206 1.206 23 C -0.164 4.164 24 C 0.007 3.993 25 C 0.154 3.846 26 O -0.304 6.304 27 N -0.251 5.251 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.206 0.794 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.189 0.811 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.344 12.986 -8.410 21.790 hybrid contribution 1.406 0.576 -0.712 1.679 sum -13.938 13.562 -9.123 21.481 Atomic orbital electron populations 1.20935 0.85340 1.05029 1.04756 1.21953 0.98799 0.86736 0.90477 1.22205 0.92729 1.00890 1.03344 1.20607 0.94778 0.93779 0.91052 1.21012 0.99810 0.92779 1.04151 1.20751 0.93678 0.95444 1.12291 1.18100 0.86939 0.75160 0.83177 1.90742 1.70262 1.52399 1.32277 1.48068 1.07110 1.70735 1.05713 1.21507 0.78973 0.99043 1.00903 1.22038 1.00590 0.98654 0.94507 1.19784 0.92858 0.85871 0.91069 1.22106 1.00071 0.98128 0.99830 1.42702 1.62769 1.15096 1.17317 1.20145 1.27466 1.01162 0.94302 0.91278 1.26751 1.01126 0.93627 1.08172 1.70996 1.40036 1.37762 1.14479 0.82748 0.75676 0.75164 0.72111 1.22979 1.20886 1.20573 1.22186 0.97439 0.97352 0.99405 1.21504 0.95206 1.00137 0.82405 1.19161 0.87000 0.84404 0.94071 1.84672 1.77000 1.33361 1.35337 1.67103 1.08573 1.32318 1.17097 0.88429 0.87124 0.90894 0.79419 0.89297 0.86703 0.92206 0.89686 0.93008 0.89283 0.90531 0.94281 0.91048 0.94074 0.81058 0.94722 0.91589 0.90127 0.90157 0.92843 0.72527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.16 71.24 0.72 -0.44 16 2 C 0.16 3.12 6.78 42.58 0.29 3.41 16 3 C -0.17 -2.79 9.41 22.32 0.21 -2.58 16 4 C 0.01 0.12 5.80 -19.42 -0.11 0.01 16 5 C -0.12 -1.99 9.69 71.24 0.69 -1.30 16 6 C -0.21 -6.30 3.66 -19.91 -0.07 -6.37 16 7 C 0.58 19.61 5.30 86.69 0.46 20.07 16 8 O -0.58 -23.57 16.52 -4.00 -0.07 -23.63 16 9 N -0.59 -18.73 2.97 -822.76 -2.45 -21.18 16 10 C 0.12 3.90 6.16 86.36 0.53 4.43 16 11 C -0.12 -3.53 4.96 30.67 0.15 -3.38 16 12 C 0.19 6.52 0.74 3.64 0.00 6.52 16 13 C -0.14 -4.50 8.44 71.98 0.61 -3.89 16 14 N -0.74 -32.51 4.14 -303.23 -1.25 -33.77 16 15 C -0.30 -14.97 8.68 84.03 0.73 -14.24 16 16 H 0.07 3.36 6.70 -2.91 -0.02 3.34 16 17 C -0.11 -5.76 5.50 84.86 0.47 -5.30 16 18 N -0.98 -59.29 13.70 21.65 0.30 -58.99 16 19 Si 1.12 50.11 29.92 68.60 2.05 52.16 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 23 C -0.12 -3.71 4.70 30.66 0.14 -3.56 16 24 C 0.13 4.06 6.08 86.35 0.52 4.58 16 25 C 0.33 10.30 7.77 85.13 0.66 10.96 16 26 O -0.49 -16.04 13.01 -87.15 -1.13 -17.17 16 27 N -0.53 -14.79 10.28 -296.06 -3.04 -17.83 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.56 8.07 -2.39 -0.02 0.54 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.06 1.19 7.19 -2.39 -0.02 1.18 16 35 H 0.08 2.83 7.00 -2.39 -0.02 2.81 16 36 H 0.05 1.94 6.94 -2.39 -0.02 1.93 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.42 7.27 -2.39 -0.02 1.40 16 42 H 0.36 17.21 5.29 -92.71 -0.49 16.72 16 43 H 0.24 14.60 6.77 -92.71 -0.63 13.97 16 44 H 0.07 2.15 7.31 -2.39 -0.02 2.13 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 2.24 6.22 -2.39 -0.01 2.23 16 47 H 0.05 2.06 7.75 -2.38 -0.02 2.05 16 48 H 0.41 10.69 9.06 -74.06 -0.67 10.02 16 Total: -1.00 -74.41 382.56 0.39 -74.02 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.02 Total: 37.45 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.01 Total: 8.94 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -6.45 Total: -131.77 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.20 Total: -40.80 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -74.41 0.39 -74.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484922300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.748 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds