Wall clock time and date at job start Tue Mar 31 2020 17:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99977 * 2 1 4 4 C 1.39138 * 120.47629 * 359.97438 * 3 2 1 5 5 C 1.38533 * 118.37930 * 180.02562 * 4 3 2 6 6 C 1.38252 * 119.22008 * 359.97438 * 5 4 3 7 7 N 1.31852 * 120.88735 * 359.74661 * 6 5 4 8 8 C 1.31841 * 121.77741 * 0.52448 * 7 6 5 9 9 C 1.50698 * 119.66013 * 179.75220 * 8 7 6 10 10 C 1.50700 * 109.47151 * 269.72853 * 9 8 7 11 11 O 1.21284 * 120.00164 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99963 * 179.97438 * 10 9 8 13 13 C 1.46932 * 120.62883 * 180.02562 * 12 10 9 14 14 C 1.53192 * 108.77844 * 126.36628 * 13 12 10 15 15 C 1.53045 * 109.30943 * 54.63390 * 14 13 12 16 16 C 1.53003 * 109.45779 * 178.62811 * 15 14 13 17 17 N 1.46490 * 109.46384 * 58.65283 * 15 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.53044 * 109.52582 * 298.63661 * 15 14 13 27 27 C 1.46920 * 120.63159 * 359.96999 * 12 10 9 28 28 H 1.09002 * 109.47302 * 60.00052 * 1 2 3 29 29 H 1.09008 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46961 * 299.99526 * 1 2 3 31 31 H 1.07996 * 120.80892 * 0.04116 * 4 3 2 32 32 H 1.07993 * 120.39477 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.56197 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47490 * 149.72689 * 9 8 7 35 35 H 1.09009 * 109.46872 * 29.71950 * 9 8 7 36 36 H 1.08996 * 109.58846 * 6.57565 * 13 12 10 37 37 H 1.09003 * 109.57689 * 246.15068 * 13 12 10 38 38 H 1.08995 * 109.49437 * 294.68286 * 14 13 12 39 39 H 1.08996 * 109.52274 * 174.59662 * 14 13 12 40 40 H 1.08997 * 109.46965 * 300.02851 * 16 15 14 41 41 H 1.09002 * 109.46920 * 60.02578 * 16 15 14 42 42 H 1.08994 * 109.46997 * 180.02562 * 16 15 14 43 43 H 0.97000 * 120.00577 * 359.97352 * 17 15 14 44 44 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 45 45 H 1.09000 * 109.49970 * 181.31217 * 26 15 14 46 46 H 1.09001 * 109.50257 * 301.41366 * 26 15 14 47 47 H 1.08998 * 109.58779 * 353.42447 * 27 12 10 48 48 H 1.09004 * 109.58787 * 113.70161 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2979 2.3841 -0.0005 5 6 1.9716 3.5946 -0.0011 6 6 3.3541 3.5975 -0.0005 7 7 4.0334 2.4675 0.0055 8 6 3.4306 1.2950 0.0010 9 6 4.2542 0.0330 0.0026 10 6 4.5294 -0.3891 -1.4177 11 8 4.0987 0.2697 -2.3404 12 7 5.2541 -1.4987 -1.6625 13 6 5.5312 -1.9226 -3.0418 14 6 7.0434 -2.1022 -3.2082 15 6 7.5592 -3.0674 -2.1383 16 6 9.0637 -3.2759 -2.3225 17 7 6.8689 -4.3531 -2.2672 18 6 7.1679 -5.3796 -1.4116 19 1 7.9124 -5.2413 -0.6416 20 6 6.5142 -6.5981 -1.5341 21 7 5.6073 -6.7668 -2.4729 22 14 6.9217 -7.9981 -0.3665 23 1 6.0925 -9.1825 -0.7053 24 1 8.3593 -8.3477 -0.4955 25 1 6.6379 -7.5774 1.0291 26 6 7.2919 -2.4822 -0.7497 27 6 5.7831 -2.3067 -0.5554 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.2184 2.3517 -0.0003 32 1 1.4233 4.5250 -0.0011 33 1 3.8849 4.5381 -0.0005 34 1 3.7073 -0.7572 0.5169 35 1 5.1979 0.2157 0.5166 36 1 5.1750 -1.1620 -3.7364 37 1 5.0267 -2.8680 -3.2417 38 1 7.5387 -1.1376 -3.0971 39 1 7.2554 -2.5084 -4.1972 40 1 9.2542 -3.6931 -3.3113 41 1 9.5774 -2.3194 -2.2266 42 1 9.4311 -3.9637 -1.5610 43 1 6.1999 -4.4773 -2.9585 44 1 5.3955 -6.0397 -3.0789 45 1 7.6802 -3.1590 0.0114 46 1 7.7848 -1.5140 -0.6618 47 1 5.5931 -1.7995 0.3905 48 1 5.2975 -3.2826 -0.5506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484922594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:41 Heat of formation + Delta-G solvation = -42.156780 kcal Electronic energy + Delta-G solvation = -29673.825761 eV Core-core repulsion = 25728.688545 eV Total energy + Delta-G solvation = -3945.137216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.94232 -41.10998 -39.32986 -39.04597 -36.18348 -34.51567 -34.12766 -32.61386 -32.04969 -30.59164 -29.72329 -28.67513 -28.29372 -25.73637 -24.52234 -24.29433 -23.86083 -23.19538 -21.08629 -19.81814 -19.07131 -18.84811 -18.33952 -18.17578 -17.38315 -16.91780 -16.80150 -16.50739 -16.21717 -15.82460 -15.35809 -15.34351 -15.03944 -14.91501 -14.83885 -14.69307 -14.24556 -14.17260 -14.03092 -13.59325 -13.26764 -13.19110 -12.98059 -12.78292 -12.70211 -12.57880 -12.38214 -12.34618 -12.24555 -12.14106 -11.89210 -11.73447 -11.45604 -11.02033 -10.93455 -10.80502 -10.61631 -10.57770 -9.66354 -9.35178 -8.96961 -8.23042 -5.16582 0.08603 0.28937 1.58633 1.62429 1.71358 1.86486 1.97798 2.23196 2.77697 2.78717 3.25645 3.53276 3.57767 3.60724 3.70691 3.80713 3.90025 3.97029 4.06440 4.09793 4.20352 4.24087 4.30204 4.32637 4.35696 4.42900 4.45462 4.58122 4.61016 4.66578 4.72623 4.77207 4.80328 4.95128 4.97795 5.02458 5.03788 5.10022 5.11492 5.27240 5.30930 5.50042 5.51235 5.62727 5.78082 6.21570 6.42611 6.62955 6.99407 7.11406 7.22560 8.13554 8.27022 9.28536 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.003124 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.423431 B = 8960.610451 C = 9868.868702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.075 3.925 4 C -0.168 4.168 5 C -0.125 4.125 6 C 0.048 3.952 7 N -0.468 5.468 8 C 0.095 3.905 9 C -0.078 4.078 10 C 0.523 3.477 11 O -0.584 6.584 12 N -0.599 5.599 13 C 0.122 3.878 14 C -0.120 4.120 15 C 0.193 3.807 16 C -0.142 4.142 17 N -0.736 5.736 18 C -0.297 4.297 19 H 0.070 0.930 20 C -0.109 4.109 21 N -0.985 5.985 22 Si 1.118 2.882 23 H -0.302 1.302 24 H -0.283 1.283 25 H -0.277 1.277 26 C -0.128 4.128 27 C 0.121 3.879 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.356 0.644 44 H 0.241 0.759 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 20.989 8.433 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.027 3.973 4 C -0.194 4.194 5 C -0.144 4.144 6 C -0.110 4.110 7 N -0.177 5.177 8 C -0.044 4.044 9 C -0.118 4.118 10 C 0.313 3.687 11 O -0.465 6.465 12 N -0.331 5.331 13 C -0.001 4.001 14 C -0.158 4.158 15 C 0.104 3.896 16 C -0.202 4.202 17 N -0.379 5.379 18 C -0.429 4.429 19 H 0.088 0.912 20 C -0.300 4.300 21 N -0.634 5.634 22 Si 0.946 3.054 23 H -0.229 1.229 24 H -0.210 1.210 25 H -0.203 1.203 26 C -0.168 4.168 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.185 0.815 32 H 0.194 0.806 33 H 0.201 0.799 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.189 0.811 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.121 0.879 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.631 19.600 8.547 22.387 hybrid contribution -0.987 1.034 -1.074 1.788 sum -7.618 20.634 7.473 23.230 Atomic orbital electron populations 1.23388 0.76175 1.05632 1.02537 1.86095 1.23731 1.26221 1.88270 1.20046 0.93129 0.86290 0.97824 1.22067 1.02154 0.91526 1.03631 1.22401 0.95317 0.99394 0.97296 1.23179 0.92702 0.96384 0.98693 1.67401 1.41243 0.98235 1.10840 1.20027 0.88661 0.93494 1.02182 1.20431 1.02431 0.94953 0.93979 1.20752 0.76933 0.79407 0.91650 1.90620 1.53365 1.54921 1.47604 1.48098 1.52105 1.25199 1.07740 1.21371 0.96402 0.99086 0.83270 1.22019 0.94537 0.99862 0.99422 1.19776 0.91692 0.84771 0.93402 1.22112 0.96622 1.00772 1.00657 1.42697 1.46896 1.09969 1.38291 1.20171 1.19038 0.93352 1.10365 0.91198 1.26834 0.98013 1.01763 1.03363 1.70990 1.36542 1.34475 1.21438 0.82715 0.75353 0.73394 0.73982 1.22922 1.21004 1.20309 1.22202 0.95071 1.00656 0.98886 1.21663 0.94826 0.94835 0.88764 0.91919 0.86931 0.90389 0.81492 0.80620 0.79907 0.86249 0.85654 0.90242 0.93387 0.89919 0.90885 0.94342 0.91369 0.93898 0.81128 0.94823 0.91331 0.90586 0.87943 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.83 113.37 1.11 1.37 16 2 O -0.33 -8.30 9.55 -92.45 -0.88 -9.19 16 3 C 0.08 1.91 6.67 22.60 0.15 2.07 16 4 C -0.17 -3.08 9.14 22.56 0.21 -2.87 16 5 C -0.12 -1.96 10.11 22.34 0.23 -1.74 16 6 C 0.05 0.96 11.18 84.69 0.95 1.91 16 7 N -0.47 -12.92 10.27 -183.50 -1.88 -14.81 16 8 C 0.10 2.73 5.29 42.67 0.23 2.96 16 9 C -0.08 -2.18 4.12 29.10 0.12 -2.06 16 10 C 0.52 18.19 7.69 87.66 0.67 18.87 16 11 O -0.58 -24.20 15.45 -3.04 -0.05 -24.25 16 12 N -0.60 -20.49 2.97 -819.02 -2.43 -22.92 16 13 C 0.12 4.36 6.16 86.36 0.53 4.89 16 14 C -0.12 -3.95 4.96 30.67 0.15 -3.80 16 15 C 0.19 7.04 0.74 3.64 0.00 7.04 16 16 C -0.14 -4.90 8.44 71.98 0.61 -4.29 16 17 N -0.74 -34.12 4.14 -303.23 -1.25 -35.38 16 18 C -0.30 -15.39 8.68 84.03 0.73 -14.66 16 19 H 0.07 3.51 6.70 -2.91 -0.02 3.49 16 20 C -0.11 -6.10 5.50 84.86 0.47 -5.63 16 21 N -0.98 -60.68 13.70 21.65 0.30 -60.38 16 22 Si 1.12 51.02 29.92 68.60 2.05 53.07 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 C -0.13 -4.16 4.70 30.65 0.14 -4.02 16 27 C 0.12 3.95 6.08 86.34 0.52 4.47 16 28 H 0.06 0.84 7.70 -2.39 -0.02 0.82 16 29 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.08 0.79 7.70 -2.39 -0.02 0.78 16 31 H 0.17 1.93 6.45 -2.91 -0.02 1.91 16 32 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.12 3.07 7.33 -2.39 -0.02 3.06 16 35 H 0.13 3.02 7.69 -2.38 -0.02 3.00 16 36 H 0.08 2.89 7.00 -2.39 -0.02 2.87 16 37 H 0.05 1.92 6.94 -2.39 -0.02 1.91 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.58 7.27 -2.39 -0.02 1.56 16 43 H 0.36 17.96 5.29 -92.71 -0.49 17.47 16 44 H 0.24 14.90 6.77 -92.71 -0.63 14.27 16 45 H 0.07 2.35 7.31 -2.39 -0.02 2.33 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.10 2.64 5.93 -2.39 -0.01 2.63 16 48 H 0.05 2.12 7.75 -2.38 -0.02 2.10 16 Total: -1.00 -75.35 379.40 3.30 -72.06 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.63 Total: 37.29 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.82 Total: 4.51 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -5.28 Total: -133.49 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.93 Total: -33.44 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -75.35 3.30 -72.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484922594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.899 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds