Wall clock time and date at job start Tue Mar 31 2020 17:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38664 * 120.79114 * 2 1 4 4 C 1.38178 * 119.16378 * 180.02562 * 3 2 1 5 5 N 1.31889 * 120.76475 * 0.02562 * 4 3 2 6 6 C 1.31854 * 121.72568 * 359.67833 * 5 4 3 7 7 C 1.38226 * 120.75932 * 0.58746 * 6 5 4 8 8 C 1.50703 * 120.41698 * 179.72437 * 7 6 5 9 9 C 1.50696 * 109.47523 * 264.71873 * 8 7 6 10 10 O 1.21286 * 119.99540 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99939 * 179.97438 * 9 8 7 12 12 C 1.47150 * 120.98672 * 0.02562 * 11 9 8 13 13 C 1.53297 * 108.38316 * 129.48446 * 12 11 9 14 14 O 1.42968 * 109.26403 * 52.28253 * 13 12 11 15 15 C 1.42962 * 114.16813 * 297.50006 * 14 13 12 16 16 H 1.08999 * 109.47179 * 302.57307 * 15 14 13 17 17 C 1.52997 * 109.55124 * 182.47205 * 15 14 13 18 18 H 1.08998 * 109.46915 * 185.17369 * 17 15 14 19 19 C 1.52996 * 109.47021 * 305.17804 * 17 15 14 20 20 N 1.46505 * 109.47048 * 65.17846 * 17 15 14 21 21 C 1.36935 * 119.99850 * 155.00288 * 20 17 15 22 22 H 1.07998 * 119.99842 * 359.97438 * 21 20 17 23 23 C 1.38805 * 119.99946 * 180.02562 * 21 20 17 24 24 N 1.31625 * 120.00318 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00169 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47112 * 89.99550 * 25 23 21 27 27 H 1.48505 * 109.47084 * 209.99712 * 25 23 21 28 28 H 1.48492 * 109.46974 * 329.99492 * 25 23 21 29 29 C 1.47154 * 120.97922 * 180.02562 * 11 9 8 30 30 H 1.09000 * 109.46843 * 269.98505 * 1 2 3 31 31 H 1.08998 * 109.46668 * 29.97493 * 1 2 3 32 32 H 1.08995 * 109.46990 * 149.97630 * 1 2 3 33 33 H 1.08003 * 120.42080 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.61999 * 179.97438 * 4 3 2 35 35 H 1.07998 * 119.62155 * 180.28854 * 6 5 4 36 36 H 1.09003 * 109.46582 * 144.71907 * 8 7 6 37 37 H 1.09000 * 109.47106 * 24.72274 * 8 7 6 38 38 H 1.09000 * 109.67857 * 9.76975 * 12 11 9 39 39 H 1.08993 * 109.68732 * 249.20795 * 12 11 9 40 40 H 1.09002 * 109.51172 * 172.23104 * 13 12 11 41 41 H 1.08997 * 109.51619 * 292.33217 * 13 12 11 42 42 H 1.09001 * 109.47305 * 299.99631 * 19 17 15 43 43 H 1.08998 * 109.47631 * 60.00003 * 19 17 15 44 44 H 1.09002 * 109.47134 * 180.02562 * 19 17 15 45 45 H 0.97001 * 120.00056 * 334.99812 * 20 17 15 46 46 H 0.96998 * 120.00414 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.68750 * 350.23961 * 29 11 9 48 48 H 1.09003 * 109.68618 * 110.75356 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5983 -1.1517 0.0042 7 6 2.2166 -1.1909 -0.0006 8 6 1.4908 -2.5116 -0.0002 9 6 1.1392 -2.8921 -1.4153 10 8 1.4481 -2.1628 -2.3339 11 7 0.4825 -4.0432 -1.6603 12 6 0.0978 -4.9443 -0.5624 13 6 -1.3895 -5.2834 -0.7139 14 8 -1.6321 -5.7591 -2.0401 15 6 -1.3594 -4.8003 -3.0649 16 1 -1.9567 -3.9049 -2.8930 17 6 -1.7116 -5.3954 -4.4296 18 1 -1.4181 -4.6999 -5.2159 19 6 -0.9678 -6.7194 -4.6160 20 7 -3.1556 -5.6321 -4.5012 21 6 -3.7849 -5.6634 -5.7170 22 1 -3.2167 -5.5131 -6.6231 23 6 -5.1531 -5.8872 -5.7848 24 7 -5.8456 -6.0698 -4.6805 25 14 -6.0117 -5.9291 -7.4433 26 1 -6.0095 -7.3188 -7.9668 27 1 -7.4124 -5.4610 -7.2876 28 1 -5.2958 -5.0409 -8.3939 29 6 0.1290 -4.4361 -3.0336 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3632 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6968 2.1377 -0.0004 34 1 4.1584 2.0753 -0.0010 35 1 4.1585 -2.0751 0.0079 36 1 0.5785 -2.4246 0.5900 37 1 2.1323 -3.2787 0.4336 38 1 0.2659 -4.4498 0.3944 39 1 0.6896 -5.8582 -0.6129 40 1 -1.6620 -6.0557 0.0055 41 1 -1.9870 -4.3900 -0.5326 42 1 0.1065 -6.5432 -4.5628 43 1 -1.2614 -7.4149 -3.8297 44 1 -1.2184 -7.1431 -5.5885 45 1 -3.6659 -5.7668 -3.6873 46 1 -6.8017 -6.2266 -4.7278 47 1 0.3178 -3.6053 -3.7134 48 1 0.7245 -5.2984 -3.3337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485637938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:27 Heat of formation + Delta-G solvation = -28.995389 kcal Electronic energy + Delta-G solvation = -29064.992160 eV Core-core repulsion = 25120.425664 eV Total energy + Delta-G solvation = -3944.566495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97139 -40.06771 -38.41804 -35.56339 -34.68405 -34.57818 -32.87589 -32.42791 -30.41585 -29.11902 -28.44742 -27.91669 -26.71905 -24.75336 -23.49645 -23.22160 -22.50539 -21.67982 -19.71181 -19.24440 -17.57282 -17.19071 -17.06297 -16.73626 -16.43626 -15.88328 -15.50422 -15.32644 -15.09886 -14.63799 -14.51313 -14.29106 -13.84168 -13.63394 -13.57339 -13.33586 -13.12624 -12.95595 -12.91721 -12.82546 -12.56971 -12.28705 -12.20431 -12.01162 -11.62635 -11.35326 -11.15632 -10.85699 -10.75125 -10.56722 -10.31291 -10.12462 -9.91558 -9.86892 -9.69424 -9.66829 -9.62666 -9.18663 -8.90412 -8.54677 -6.94444 -5.74528 -3.03295 0.84636 1.02937 2.43165 2.73374 3.44469 3.49753 3.51143 3.55035 3.92181 4.12617 4.31191 4.37887 4.42150 4.55961 4.58021 4.62818 4.70083 4.83453 5.00291 5.03098 5.04082 5.14136 5.20357 5.24109 5.29478 5.31086 5.39622 5.52359 5.58333 5.63527 5.66610 5.69022 5.77833 5.82029 5.96023 5.96725 6.07742 6.17928 6.31634 6.44442 6.46565 6.63704 6.80932 7.14008 7.19458 7.43546 7.71088 7.74695 7.98303 8.43706 9.55649 10.12884 10.49549 11.47905 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002476 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.378811 B =11306.109587 C =11742.965498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.024 4.024 3 C -0.173 4.173 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.114 3.886 7 C -0.119 4.119 8 C -0.098 4.098 9 C 0.516 3.484 10 O -0.530 6.530 11 N -0.613 5.613 12 C 0.070 3.930 13 C 0.045 3.955 14 O -0.357 6.357 15 C 0.077 3.923 16 H 0.063 0.937 17 C 0.185 3.815 18 H 0.059 0.941 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.082 3.918 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.389 0.611 46 H 0.254 0.746 47 H 0.099 0.901 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.595 8.969 16.120 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.193 4.193 4 C -0.058 4.058 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.122 4.122 8 C -0.139 4.139 9 C 0.304 3.696 10 O -0.406 6.406 11 N -0.348 5.348 12 C -0.053 4.053 13 C -0.033 4.033 14 O -0.275 6.275 15 C 0.017 3.983 16 H 0.081 0.919 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.040 4.040 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.223 0.777 46 H 0.064 0.936 47 H 0.117 0.883 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.541 9.210 15.389 25.087 hybrid contribution -1.557 0.044 -0.511 1.639 sum 15.985 9.254 14.879 23.717 Atomic orbital electron populations 1.20872 0.90273 1.03914 1.02631 1.20161 0.96718 0.92458 0.93853 1.22008 0.95629 0.98539 1.03147 1.22724 0.91783 0.96232 0.95055 1.67674 1.41074 0.98441 1.12611 1.22571 0.90763 0.96346 0.94588 1.20161 0.94964 0.94154 1.02881 1.20629 1.02193 0.95624 0.95408 1.20439 0.77722 0.80463 0.91005 1.90741 1.53076 1.50587 1.46204 1.48201 1.57251 1.21043 1.08318 1.22542 0.97936 0.94698 0.90101 1.22902 0.93083 1.00582 0.86714 1.88114 1.87402 1.38836 1.13169 1.22960 0.92623 0.92382 0.90290 0.91937 1.20193 0.87127 0.94715 0.90556 0.92331 1.22414 0.97422 1.00319 1.02080 1.42351 1.01066 1.85823 1.06811 1.19245 0.90802 1.41158 0.85771 0.91180 1.24736 0.96474 1.02836 0.96879 1.69677 1.06898 1.55803 1.25574 0.86207 0.78981 0.77629 0.83481 1.21740 1.21828 1.20774 1.22488 0.96904 1.01889 0.82723 0.90330 0.90656 0.91094 0.84789 0.82831 0.83064 0.87644 0.87609 0.89192 0.90202 0.87799 0.92887 0.94685 0.92423 0.92885 0.77695 0.93574 0.88264 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.31 36.01 0.34 -0.66 16 2 C -0.02 -0.24 5.92 -104.32 -0.62 -0.85 16 3 C -0.17 -1.57 9.82 -39.45 -0.39 -1.96 16 4 C 0.10 0.95 11.18 -17.55 -0.20 0.76 16 5 N -0.49 -5.67 10.36 -13.25 -0.14 -5.81 16 6 C 0.11 1.21 10.84 -17.55 -0.19 1.02 16 7 C -0.12 -1.20 4.39 -104.48 -0.46 -1.66 16 8 C -0.10 -0.80 3.55 -29.04 -0.10 -0.91 16 9 C 0.52 6.27 7.03 -10.99 -0.08 6.19 16 10 O -0.53 -8.65 15.50 5.55 0.09 -8.57 16 11 N -0.61 -7.20 3.02 -172.30 -0.52 -7.72 16 12 C 0.07 0.61 6.54 -3.53 -0.02 0.59 16 13 C 0.05 0.50 6.98 37.31 0.26 0.76 16 14 O -0.36 -5.76 9.25 -35.23 -0.33 -6.08 16 15 C 0.08 1.27 2.60 -26.60 -0.07 1.21 16 16 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.18 3.66 2.77 -67.93 -0.19 3.47 16 18 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 19 C -0.16 -2.96 9.06 37.16 0.34 -2.62 16 20 N -0.72 -18.08 5.10 -53.43 -0.27 -18.35 16 21 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 25 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.08 1.16 5.82 -3.55 -0.02 1.14 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.07 0.68 6.36 -51.93 -0.33 0.35 16 33 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.11 0.66 6.61 -51.93 -0.34 0.32 16 37 H 0.11 0.59 7.93 -51.93 -0.41 0.18 16 38 H 0.09 0.48 6.05 -51.93 -0.31 0.17 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.53 6.42 -51.93 -0.33 0.19 16 43 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.39 10.54 7.59 -40.82 -0.31 10.23 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 48 H 0.08 1.10 6.28 -51.93 -0.33 0.77 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -35.18 385.65 -8.62 -43.81 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.32 Total: 7.73 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.64 Total: -0.78 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.21 Total: -59.35 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.24 Total: -14.65 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.18 -8.62 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485637938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.811 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds