Wall clock time and date at job start Tue Mar 31 2020 17:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38664 * 120.79114 * 2 1 4 4 C 1.38178 * 119.16378 * 180.02562 * 3 2 1 5 5 N 1.31889 * 120.76475 * 0.02562 * 4 3 2 6 6 C 1.31854 * 121.72568 * 359.67833 * 5 4 3 7 7 C 1.38226 * 120.75932 * 0.58746 * 6 5 4 8 8 C 1.50703 * 120.41698 * 179.72437 * 7 6 5 9 9 C 1.50696 * 109.47523 * 264.71873 * 8 7 6 10 10 O 1.21286 * 119.99540 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99939 * 179.97438 * 9 8 7 12 12 C 1.47150 * 120.98672 * 0.02562 * 11 9 8 13 13 C 1.53297 * 108.38316 * 129.48446 * 12 11 9 14 14 O 1.42968 * 109.26403 * 52.28253 * 13 12 11 15 15 C 1.42962 * 114.16813 * 297.50006 * 14 13 12 16 16 H 1.08999 * 109.47179 * 302.57307 * 15 14 13 17 17 C 1.52997 * 109.55124 * 182.47205 * 15 14 13 18 18 H 1.08998 * 109.46915 * 185.17369 * 17 15 14 19 19 C 1.52996 * 109.47021 * 305.17804 * 17 15 14 20 20 N 1.46505 * 109.47048 * 65.17846 * 17 15 14 21 21 C 1.36935 * 119.99850 * 155.00288 * 20 17 15 22 22 H 1.07998 * 119.99842 * 359.97438 * 21 20 17 23 23 C 1.38805 * 119.99946 * 180.02562 * 21 20 17 24 24 N 1.31625 * 120.00318 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00169 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47112 * 89.99550 * 25 23 21 27 27 H 1.48505 * 109.47084 * 209.99712 * 25 23 21 28 28 H 1.48492 * 109.46974 * 329.99492 * 25 23 21 29 29 C 1.47154 * 120.97922 * 180.02562 * 11 9 8 30 30 H 1.09000 * 109.46843 * 269.98505 * 1 2 3 31 31 H 1.08998 * 109.46668 * 29.97493 * 1 2 3 32 32 H 1.08995 * 109.46990 * 149.97630 * 1 2 3 33 33 H 1.08003 * 120.42080 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.61999 * 179.97438 * 4 3 2 35 35 H 1.07998 * 119.62155 * 180.28854 * 6 5 4 36 36 H 1.09003 * 109.46582 * 144.71907 * 8 7 6 37 37 H 1.09000 * 109.47106 * 24.72274 * 8 7 6 38 38 H 1.09000 * 109.67857 * 9.76975 * 12 11 9 39 39 H 1.08993 * 109.68732 * 249.20795 * 12 11 9 40 40 H 1.09002 * 109.51172 * 172.23104 * 13 12 11 41 41 H 1.08997 * 109.51619 * 292.33217 * 13 12 11 42 42 H 1.09001 * 109.47305 * 299.99631 * 19 17 15 43 43 H 1.08998 * 109.47631 * 60.00003 * 19 17 15 44 44 H 1.09002 * 109.47134 * 180.02562 * 19 17 15 45 45 H 0.97001 * 120.00056 * 334.99812 * 20 17 15 46 46 H 0.96998 * 120.00414 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.68750 * 350.23961 * 29 11 9 48 48 H 1.09003 * 109.68618 * 110.75356 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5983 -1.1517 0.0042 7 6 2.2166 -1.1909 -0.0006 8 6 1.4908 -2.5116 -0.0002 9 6 1.1392 -2.8921 -1.4153 10 8 1.4481 -2.1628 -2.3339 11 7 0.4825 -4.0432 -1.6603 12 6 0.0978 -4.9443 -0.5624 13 6 -1.3895 -5.2834 -0.7139 14 8 -1.6321 -5.7591 -2.0401 15 6 -1.3594 -4.8003 -3.0649 16 1 -1.9567 -3.9049 -2.8930 17 6 -1.7116 -5.3954 -4.4296 18 1 -1.4181 -4.6999 -5.2159 19 6 -0.9678 -6.7194 -4.6160 20 7 -3.1556 -5.6321 -4.5012 21 6 -3.7849 -5.6634 -5.7170 22 1 -3.2167 -5.5131 -6.6231 23 6 -5.1531 -5.8872 -5.7848 24 7 -5.8456 -6.0698 -4.6805 25 14 -6.0117 -5.9291 -7.4433 26 1 -6.0095 -7.3188 -7.9668 27 1 -7.4124 -5.4610 -7.2876 28 1 -5.2958 -5.0409 -8.3939 29 6 0.1290 -4.4361 -3.0336 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3632 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6968 2.1377 -0.0004 34 1 4.1584 2.0753 -0.0010 35 1 4.1585 -2.0751 0.0079 36 1 0.5785 -2.4246 0.5900 37 1 2.1323 -3.2787 0.4336 38 1 0.2659 -4.4498 0.3944 39 1 0.6896 -5.8582 -0.6129 40 1 -1.6620 -6.0557 0.0055 41 1 -1.9870 -4.3900 -0.5326 42 1 0.1065 -6.5432 -4.5628 43 1 -1.2614 -7.4149 -3.8297 44 1 -1.2184 -7.1431 -5.5885 45 1 -3.6659 -5.7668 -3.6873 46 1 -6.8017 -6.2266 -4.7278 47 1 0.3178 -3.6053 -3.7134 48 1 0.7245 -5.2984 -3.3337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485637938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:26 Heat of formation + Delta-G solvation = -53.226291 kcal Electronic energy + Delta-G solvation = -29066.042890 eV Core-core repulsion = 25120.425664 eV Total energy + Delta-G solvation = -3945.617226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80538 -40.96560 -39.53047 -37.11713 -35.72882 -35.40336 -34.34364 -33.46982 -31.90199 -29.96764 -29.84580 -28.76406 -27.76150 -26.35484 -24.90326 -24.05534 -23.47106 -22.56766 -21.18330 -20.14869 -19.29803 -18.36189 -17.79659 -17.70626 -17.31885 -16.98804 -16.65915 -16.49070 -16.07212 -15.96850 -15.69413 -15.36011 -15.13615 -14.85396 -14.51264 -14.36533 -14.24652 -13.99751 -13.76939 -13.69834 -13.60488 -13.52953 -13.17823 -12.96769 -12.92202 -12.83188 -12.44391 -12.37530 -12.27700 -12.17972 -11.82585 -11.64426 -11.55893 -11.17569 -10.93580 -10.92262 -10.41810 -10.34022 -9.90619 -9.58244 -9.00726 -7.92600 -5.21084 0.14139 0.31911 1.47070 1.48669 1.53405 1.56902 1.83654 2.56388 2.80374 2.83977 3.41098 3.45655 3.54065 3.63323 3.70674 3.79207 3.91948 3.95274 3.99457 4.01712 4.04356 4.18086 4.35489 4.38081 4.43700 4.45069 4.49279 4.57352 4.61908 4.64982 4.66878 4.69741 4.82013 4.86803 4.90325 4.99092 5.03348 5.09326 5.16014 5.23948 5.30403 5.40101 5.51337 5.61749 5.79667 6.27291 6.28939 6.32477 7.03255 7.07363 7.35573 8.11056 8.36087 9.30844 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002476 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.378811 B =11306.109587 C =11742.965498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 C -0.178 4.178 4 C 0.086 3.914 5 N -0.518 5.518 6 C 0.099 3.901 7 C -0.130 4.130 8 C -0.090 4.090 9 C 0.515 3.485 10 O -0.579 6.579 11 N -0.614 5.614 12 C 0.074 3.926 13 C 0.035 3.965 14 O -0.383 6.383 15 C 0.094 3.906 16 H 0.039 0.961 17 C 0.175 3.825 18 H 0.054 0.946 19 C -0.148 4.148 20 N -0.732 5.732 21 C -0.239 4.239 22 H 0.075 0.925 23 C -0.076 4.076 24 N -0.969 5.969 25 Si 0.971 3.029 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.270 1.270 29 C 0.093 3.907 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.167 0.833 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.376 0.624 46 H 0.250 0.750 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.821 8.967 17.543 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.198 4.198 4 C -0.070 4.070 5 N -0.227 5.227 6 C -0.058 4.058 7 C -0.132 4.132 8 C -0.129 4.129 9 C 0.305 3.695 10 O -0.459 6.459 11 N -0.347 5.347 12 C -0.048 4.048 13 C -0.042 4.042 14 O -0.302 6.302 15 C 0.034 3.966 16 H 0.057 0.943 17 C 0.066 3.934 18 H 0.072 0.928 19 C -0.208 4.208 20 N -0.372 5.372 21 C -0.371 4.371 22 H 0.093 0.907 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.800 3.200 26 H -0.215 1.215 27 H -0.222 1.222 28 H -0.195 1.195 29 C -0.031 4.031 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.193 0.807 35 H 0.184 0.816 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.208 0.792 46 H 0.059 0.941 47 H 0.100 0.900 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.818 9.199 16.831 26.870 hybrid contribution -1.876 0.084 -0.891 2.078 sum 16.942 9.284 15.940 25.046 Atomic orbital electron populations 1.20879 0.89358 1.03246 1.03878 1.20506 0.97601 0.92909 0.93754 1.22302 0.95612 0.99424 1.02462 1.23161 0.92470 0.96633 0.94696 1.67676 1.42064 0.99305 1.13692 1.22907 0.91400 0.96755 0.94732 1.20363 0.94954 0.95078 1.02821 1.20703 1.03783 0.95643 0.92812 1.21133 0.76631 0.79582 0.92170 1.90724 1.55063 1.52001 1.48063 1.48283 1.56921 1.21560 1.07954 1.22761 0.96002 0.95269 0.90756 1.23252 0.95046 1.01340 0.84590 1.88060 1.88012 1.39071 1.15069 1.22488 0.93920 0.91097 0.89083 0.94324 1.20422 0.84532 0.95636 0.92785 0.92772 1.22207 0.99275 0.98633 1.00635 1.42514 1.03222 1.86015 1.05453 1.19627 0.91184 1.39361 0.86894 0.90708 1.25534 0.97346 1.03725 1.00230 1.69833 1.06745 1.57757 1.27596 0.85174 0.77480 0.77646 0.79677 1.21463 1.22239 1.19545 1.22159 0.94959 1.01513 0.84438 0.88029 0.90562 0.92503 0.82621 0.80699 0.81623 0.85149 0.84217 0.84942 0.88680 0.85336 0.93294 0.91226 0.93339 0.94571 0.79222 0.94112 0.89966 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.31 71.24 0.66 -1.08 16 2 C -0.04 -0.73 5.92 -19.67 -0.12 -0.84 16 3 C -0.18 -3.00 9.82 22.36 0.22 -2.78 16 4 C 0.09 1.58 11.18 84.67 0.95 2.53 16 5 N -0.52 -11.63 10.36 -195.84 -2.03 -13.66 16 6 C 0.10 1.96 10.84 84.69 0.92 2.88 16 7 C -0.13 -2.38 4.39 -19.77 -0.09 -2.46 16 8 C -0.09 -1.18 3.55 29.10 0.10 -1.08 16 9 C 0.51 11.56 7.03 87.66 0.62 12.17 16 10 O -0.58 -18.73 15.50 -3.05 -0.05 -18.78 16 11 N -0.61 -13.09 3.02 -817.44 -2.47 -15.56 16 12 C 0.07 1.01 6.54 86.35 0.56 1.57 16 13 C 0.03 0.69 6.98 72.08 0.50 1.20 16 14 O -0.38 -12.07 9.25 -148.98 -1.38 -13.45 16 15 C 0.09 3.12 2.60 30.68 0.08 3.20 16 16 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 17 C 0.18 7.01 2.77 44.99 0.12 7.14 16 18 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16 19 C -0.15 -5.30 9.06 71.98 0.65 -4.65 16 20 N -0.73 -37.67 5.10 -322.95 -1.65 -39.31 16 21 C -0.24 -13.44 9.93 84.03 0.83 -12.61 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 25 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 29 C 0.09 2.54 5.82 86.34 0.50 3.05 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.06 1.01 6.36 -2.39 -0.02 1.00 16 33 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.13 1.09 6.61 -2.39 -0.02 1.07 16 37 H 0.14 0.91 7.93 -2.39 -0.02 0.89 16 38 H 0.13 0.71 6.05 -2.39 -0.01 0.70 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.99 6.42 -2.39 -0.02 1.97 16 43 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.38 21.02 7.59 -92.71 -0.70 20.32 16 46 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 47 H 0.08 2.55 7.08 -2.39 -0.02 2.53 16 48 H 0.09 2.29 6.28 -2.39 -0.01 2.27 16 Total: -1.00 -79.32 385.65 2.00 -77.32 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.27 Total: 30.12 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 6.99 Total: 4.27 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.86 Total: -128.23 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.43 Total: -32.23 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -79.32 2.00 -77.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485637938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.098 kcal (2) G-P(sol) polarization free energy of solvation -79.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds