Wall clock time and date at job start Tue Mar 31 2020 17:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38675 * 120.78838 * 2 1 4 4 C 1.38182 * 119.15849 * 179.79862 * 3 2 1 5 5 N 1.31883 * 120.76586 * 0.49015 * 4 3 2 6 6 C 1.31853 * 121.72885 * 359.73741 * 5 4 3 7 7 C 1.38229 * 120.75863 * 0.02646 * 6 5 4 8 8 C 1.50702 * 120.41330 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47112 * 264.97382 * 8 7 6 10 10 O 1.21281 * 120.00061 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99992 * 180.02562 * 9 8 7 12 12 C 1.47152 * 120.98206 * 0.02562 * 11 9 8 13 13 C 1.53299 * 108.38556 * 230.51167 * 12 11 9 14 14 O 1.42958 * 109.22268 * 307.70209 * 13 12 11 15 15 C 1.42961 * 114.16725 * 62.57944 * 14 13 12 16 16 H 1.08993 * 109.51448 * 57.34732 * 15 14 13 17 17 C 1.53002 * 109.50844 * 177.49343 * 15 14 13 18 18 H 1.09006 * 109.46656 * 184.99632 * 17 15 14 19 19 C 1.52992 * 109.47604 * 305.00110 * 17 15 14 20 20 N 1.46497 * 109.47362 * 65.00644 * 17 15 14 21 21 C 1.36935 * 120.00613 * 154.99506 * 20 17 15 22 22 H 1.07997 * 119.99910 * 0.02562 * 21 20 17 23 23 C 1.38810 * 120.00389 * 179.97438 * 21 20 17 24 24 N 1.31624 * 119.99935 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00371 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46909 * 60.00670 * 25 23 21 27 27 H 1.48493 * 109.47411 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47190 * 300.00677 * 25 23 21 29 29 C 1.47155 * 120.97875 * 179.72220 * 11 9 8 30 30 H 1.09002 * 109.47152 * 269.71818 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.71919 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.71900 * 1 2 3 33 33 H 1.07994 * 120.41833 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.61535 * 180.25188 * 4 3 2 35 35 H 1.08001 * 119.61864 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47613 * 24.97769 * 8 7 6 37 37 H 1.09004 * 109.46761 * 144.98017 * 8 7 6 38 38 H 1.08995 * 109.67985 * 350.23908 * 12 11 9 39 39 H 1.09002 * 109.67835 * 110.79237 * 12 11 9 40 40 H 1.09002 * 109.51085 * 67.62795 * 13 12 11 41 41 H 1.08997 * 109.51369 * 187.72397 * 13 12 11 42 42 H 1.09003 * 109.47729 * 180.02562 * 19 17 15 43 43 H 1.09009 * 109.46887 * 300.00095 * 19 17 15 44 44 H 1.08993 * 109.47448 * 59.99863 * 19 17 15 45 45 H 0.97001 * 119.99662 * 334.99015 * 20 17 15 46 46 H 0.97000 * 120.00322 * 179.97438 * 24 23 21 47 47 H 1.08997 * 109.68052 * 249.20772 * 29 11 9 48 48 H 1.08998 * 109.68514 * 9.76399 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 0.0042 5 7 4.2403 0.0001 -0.0014 6 6 3.5983 -1.1516 -0.0062 7 6 2.2166 -1.1908 -0.0059 8 6 1.4908 -2.5116 -0.0119 9 6 1.1393 -2.8851 -1.4289 10 8 1.4482 -2.1514 -2.3439 11 7 0.4818 -4.0346 -1.6795 12 6 0.0961 -4.9405 -0.5858 13 6 0.5684 -6.3551 -0.9404 14 8 0.0937 -6.6966 -2.2450 15 6 0.5987 -5.8605 -3.2889 16 1 1.6882 -5.8925 -3.2861 17 6 0.0754 -6.3561 -4.6386 18 1 0.5304 -5.7743 -5.4404 19 6 0.4339 -7.8331 -4.8135 20 7 -1.3802 -6.1979 -4.6860 21 6 -2.0166 -6.0740 -5.8921 22 1 -1.4455 -6.0934 -6.8085 23 6 -3.3959 -5.9246 -5.9370 24 7 -4.0921 -5.9015 -4.8202 25 14 -4.2640 -5.7550 -7.5823 26 1 -4.0074 -6.9648 -8.4044 27 1 -5.7247 -5.6089 -7.3586 28 1 -3.7500 -4.5561 -8.2919 29 6 0.1225 -4.4176 -3.0541 30 1 -0.3633 -0.0051 1.0277 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6967 2.1377 0.0004 34 1 4.1583 2.0754 0.0084 35 1 4.1586 -2.0750 -0.0103 36 1 2.1324 -3.2807 0.4182 37 1 0.5785 -2.4274 0.5786 38 1 0.5682 -4.6176 0.3420 39 1 -0.9876 -4.9339 -0.4686 40 1 1.6578 -6.3888 -0.9290 41 1 0.1746 -7.0638 -0.2119 42 1 0.0615 -8.1861 -5.7752 43 1 1.5170 -7.9508 -4.7783 44 1 -0.0210 -8.4148 -4.0118 45 1 -1.8932 -6.1809 -3.8630 46 1 -5.0559 -5.7968 -4.8515 47 1 -0.9586 -4.3593 -3.1807 48 1 0.6120 -3.7483 -3.7616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485637939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:30 Heat of formation + Delta-G solvation = -28.846290 kcal Electronic energy + Delta-G solvation = -29313.833422 eV Core-core repulsion = 25369.273391 eV Total energy + Delta-G solvation = -3944.560030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85978 -39.94627 -38.32013 -35.51542 -34.59904 -34.51227 -32.74123 -32.25455 -30.29026 -29.04246 -28.39061 -28.00469 -26.88325 -24.19167 -23.52165 -23.16679 -22.47085 -21.61232 -19.71401 -19.07961 -17.46374 -17.23037 -16.99127 -16.66037 -16.32323 -15.83631 -15.47822 -15.05899 -14.84892 -14.71139 -14.39154 -14.25044 -13.70739 -13.52695 -13.41202 -13.35983 -13.05956 -13.03216 -12.84383 -12.75826 -12.39364 -12.17232 -11.95931 -11.83695 -11.54526 -11.35033 -11.20904 -10.83332 -10.78357 -10.46844 -10.31855 -10.08698 -9.89530 -9.81921 -9.62639 -9.58242 -9.55487 -9.09848 -8.92087 -8.38212 -6.93391 -5.74599 -3.02927 0.91869 1.09767 2.59231 2.91922 3.45520 3.50150 3.50658 3.62562 3.95765 4.20437 4.40171 4.49322 4.50343 4.60405 4.64082 4.71988 4.79923 4.95027 5.08554 5.10113 5.11324 5.27432 5.30091 5.30838 5.37402 5.38805 5.47939 5.58491 5.60508 5.67975 5.76612 5.77413 5.86409 5.89138 6.00900 6.15144 6.22081 6.35475 6.40499 6.52794 6.56903 6.67296 6.79257 7.14602 7.38431 7.45889 7.71689 7.81210 8.15420 8.43755 9.55942 10.12294 10.49352 11.47667 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.002907 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.201984 B = 9630.884551 C =10535.100906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.024 4.024 3 C -0.174 4.174 4 C 0.097 3.903 5 N -0.490 5.490 6 C 0.114 3.886 7 C -0.118 4.118 8 C -0.098 4.098 9 C 0.514 3.486 10 O -0.532 6.532 11 N -0.613 5.613 12 C 0.069 3.931 13 C 0.048 3.952 14 O -0.359 6.359 15 C 0.078 3.922 16 H 0.055 0.945 17 C 0.182 3.818 18 H 0.059 0.941 19 C -0.159 4.159 20 N -0.717 5.717 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.087 3.913 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.032 0.968 44 H 0.056 0.944 45 H 0.389 0.611 46 H 0.255 0.745 47 H 0.099 0.901 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.615 7.682 16.241 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.194 4.194 4 C -0.059 4.059 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.120 4.120 8 C -0.139 4.139 9 C 0.302 3.698 10 O -0.408 6.408 11 N -0.347 5.347 12 C -0.054 4.054 13 C -0.031 4.031 14 O -0.277 6.277 15 C 0.019 3.981 16 H 0.073 0.927 17 C 0.071 3.929 18 H 0.077 0.923 19 C -0.219 4.219 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.035 4.035 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.224 0.776 46 H 0.064 0.936 47 H 0.117 0.883 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.497 7.966 15.528 22.062 hybrid contribution -1.520 0.202 -0.535 1.624 sum 11.976 8.168 14.992 20.855 Atomic orbital electron populations 1.20873 0.90283 1.03976 1.02564 1.20159 0.96728 0.92449 0.93848 1.22002 0.95626 0.98510 1.03217 1.22708 0.91775 0.96218 0.95202 1.67665 1.41078 0.98438 1.12638 1.22564 0.90786 0.96320 0.94627 1.20177 0.94957 0.94235 1.02630 1.20635 1.02149 0.95460 0.95645 1.20392 0.77801 0.80791 0.90837 1.90736 1.53353 1.50230 1.46481 1.48264 1.56884 1.20878 1.08693 1.22512 1.01973 0.90996 0.89910 1.22878 0.98358 0.94844 0.86982 1.88112 1.70699 1.54913 1.13980 1.23008 0.96552 0.89060 0.89494 0.92726 1.20261 0.87336 0.94400 0.90865 0.92277 1.22324 0.98213 0.99352 1.02054 1.42394 0.99823 1.87080 1.06689 1.19195 0.90004 1.41915 0.85888 0.91266 1.24708 0.96358 1.02961 0.96743 1.69657 1.06182 1.57115 1.25015 0.86299 0.78672 0.77885 0.83517 1.21335 1.21788 1.21306 1.22540 1.03376 0.96036 0.81545 0.90398 0.90946 0.90721 0.84842 0.82880 0.83090 0.87777 0.87688 0.89388 0.89888 0.93284 0.87928 0.92822 0.94892 0.92461 0.77633 0.93556 0.88317 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.31 36.01 0.34 -0.77 16 2 C -0.02 -0.26 5.92 -104.32 -0.62 -0.87 16 3 C -0.17 -1.71 9.82 -39.44 -0.39 -2.10 16 4 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 5 N -0.49 -6.05 10.36 -13.25 -0.14 -6.18 16 6 C 0.11 1.31 10.84 -17.55 -0.19 1.12 16 7 C -0.12 -1.30 4.39 -104.48 -0.46 -1.76 16 8 C -0.10 -0.93 3.55 -29.03 -0.10 -1.03 16 9 C 0.51 7.10 7.03 -10.98 -0.08 7.02 16 10 O -0.53 -9.62 15.50 5.56 0.09 -9.53 16 11 N -0.61 -8.43 3.01 -171.99 -0.52 -8.95 16 12 C 0.07 0.72 6.54 -3.53 -0.02 0.70 16 13 C 0.05 0.53 6.98 37.31 0.26 0.79 16 14 O -0.36 -5.81 9.24 -35.23 -0.33 -6.13 16 15 C 0.08 1.30 2.59 -26.34 -0.07 1.24 16 16 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 17 C 0.18 3.59 2.81 -67.94 -0.19 3.39 16 18 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 19 C -0.16 -2.93 9.29 37.15 0.35 -2.59 16 20 N -0.72 -17.50 4.24 -53.43 -0.23 -17.72 16 21 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 25 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 C 0.09 1.49 5.83 -3.29 -0.02 1.48 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 32 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.10 0.70 7.58 -51.93 -0.39 0.30 16 37 H 0.10 0.78 6.97 -51.93 -0.36 0.42 16 38 H 0.09 0.58 6.05 -51.93 -0.31 0.27 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 45 H 0.39 10.19 7.07 -40.82 -0.29 9.90 16 46 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.10 2.02 6.94 -51.93 -0.36 1.66 16 48 H 0.10 1.78 7.08 -51.93 -0.37 1.41 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -34.30 386.90 -8.65 -42.94 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.42 Total: 9.08 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.64 Total: 0.34 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.16 Total: -59.87 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.24 Total: -15.66 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.30 -8.65 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485637939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.099 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds