Wall clock time and date at job start Tue Mar 31 2020 17:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38357 * 119.40979 * 2 1 4 4 C 1.38341 * 119.46285 * 179.67940 * 3 2 1 5 5 C 1.50698 * 120.83009 * 180.30046 * 4 3 2 6 6 C 1.39988 * 118.34281 * 0.55966 * 4 3 2 7 7 C 1.47528 * 120.59559 * 179.73553 * 6 4 3 8 8 O 1.21593 * 120.00046 * 269.72716 * 7 6 4 9 9 N 1.34777 * 119.99944 * 89.45272 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27861 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46988 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.64286 * 56.68527 * 12 11 10 14 14 C 1.55158 * 110.71725 * 180.02562 * 12 11 10 15 15 C 1.54910 * 101.57921 * 153.86282 * 14 12 11 16 16 N 1.47426 * 104.83373 * 322.99248 * 15 14 12 17 17 C 1.36933 * 125.64998 * 204.09443 * 16 15 14 18 18 H 1.07996 * 120.00559 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99719 * 0.03723 * 17 16 15 20 20 N 1.31616 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99917 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46993 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47293 * 120.00178 * 21 19 17 24 24 H 1.48502 * 109.47058 * 240.00223 * 21 19 17 25 25 C 1.47020 * 108.70499 * 24.12676 * 16 15 14 26 26 C 1.40279 * 118.80801 * 359.46636 * 6 4 3 27 27 O 1.35429 * 119.79730 * 180.27047 * 26 6 4 28 28 N 1.31883 * 119.40762 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47025 * 270.02321 * 1 2 3 30 30 H 1.09000 * 109.47370 * 30.01936 * 1 2 3 31 31 H 1.09000 * 109.47437 * 150.01753 * 1 2 3 32 32 H 1.08000 * 120.26804 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46964 * 270.26980 * 5 4 3 34 34 H 1.09000 * 109.47179 * 30.26938 * 5 4 3 35 35 H 1.08993 * 109.47225 * 150.27054 * 5 4 3 36 36 H 0.97000 * 119.99736 * 0.27136 * 9 7 6 37 37 H 1.08992 * 109.46803 * 299.99362 * 10 9 7 38 38 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 39 39 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 40 40 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 41 41 H 1.08998 * 111.00621 * 271.93489 * 14 12 11 42 42 H 1.08995 * 111.00289 * 35.79156 * 14 12 11 43 43 H 1.08999 * 110.36573 * 204.15031 * 15 14 12 44 44 H 1.09005 * 110.45929 * 81.87726 * 15 14 12 45 45 H 0.97005 * 119.99965 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.88557 * 239.52822 * 25 16 15 47 47 H 1.08995 * 110.01351 * 118.42689 * 25 16 15 48 48 H 0.96699 * 113.99931 * 90.00521 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0067 5 6 4.3408 2.5013 0.0137 6 6 4.2355 -0.0249 0.0013 7 6 5.7097 -0.0814 0.0022 8 8 6.3178 -0.1047 -1.0504 9 7 6.3825 -0.1018 1.1699 10 6 7.8467 -0.1518 1.1707 11 6 8.3557 -0.1653 2.6136 12 6 9.8848 -0.2181 2.6145 13 1 10.2985 0.6188 2.0520 14 6 10.4326 -0.2336 4.0661 15 6 11.7930 -0.9500 3.8774 16 7 11.5392 -1.9779 2.8515 17 6 12.2596 -3.1298 2.6806 18 1 11.9929 -3.8221 1.8958 19 6 13.3326 -3.4078 3.5162 20 7 13.6572 -2.5645 4.4732 21 14 14.3159 -4.9788 3.2826 22 1 13.7526 -5.7509 2.1460 23 1 15.7324 -4.6382 2.9953 24 1 14.2445 -5.7961 4.5204 25 6 10.3849 -1.5611 2.0419 26 6 3.4757 -1.2041 0.0008 27 8 4.0991 -2.4063 0.0012 28 7 2.1545 -1.1489 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6411 2.1375 -0.0004 33 1 4.5275 2.8185 -1.0123 34 1 3.7616 3.2663 0.5308 35 1 5.2909 2.3556 0.5276 36 1 5.8973 -0.0832 2.0096 37 1 8.1796 -1.0548 0.6593 38 1 8.2405 0.7240 0.6550 39 1 8.0226 0.7381 3.1247 40 1 7.9618 -1.0408 3.1296 41 1 10.5735 0.7800 4.4413 42 1 9.7782 -0.8048 4.7245 43 1 12.1092 -1.4155 4.8109 44 1 12.5494 -0.2461 3.5301 45 1 14.4073 -2.7586 5.0569 46 1 9.5954 -2.3097 2.1089 47 1 10.6857 -1.4318 1.0023 48 1 4.2795 -2.7555 0.8847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494043891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:56 Heat of formation + Delta-G solvation = -28.321475 kcal Electronic energy + Delta-G solvation = -28101.407360 eV Core-core repulsion = 24156.870087 eV Total energy + Delta-G solvation = -3944.537272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30997 -39.40049 -37.82765 -37.72109 -35.26836 -34.64467 -33.04046 -32.20400 -30.89324 -29.23626 -28.65359 -27.98532 -26.47217 -24.80274 -23.73700 -22.53142 -21.97393 -20.83196 -20.09918 -19.39352 -18.80620 -17.97620 -17.54462 -16.91446 -16.34814 -15.80246 -15.64867 -15.04661 -14.81371 -14.65124 -14.49604 -14.05190 -13.78088 -13.69620 -13.55249 -13.43594 -13.23123 -12.85560 -12.55405 -12.42917 -12.29067 -12.26566 -12.01841 -11.93670 -11.73219 -11.59666 -11.08828 -10.90786 -10.76827 -10.55881 -10.14153 -10.04884 -9.96843 -9.94070 -9.78353 -9.71337 -9.45705 -9.22118 -9.20419 -8.63265 -6.80196 -5.63378 -3.04578 0.36492 0.66505 2.33514 2.83603 3.05142 3.19649 3.41009 3.46851 3.49299 4.03004 4.07162 4.40112 4.51188 4.55158 4.73669 4.83586 4.90968 4.95444 5.06064 5.08777 5.11825 5.14594 5.26598 5.38009 5.48931 5.51123 5.57998 5.58391 5.60864 5.67834 5.76524 5.86793 5.99277 6.01942 6.12900 6.19949 6.31355 6.38096 6.60436 6.63661 6.77620 6.97950 7.05720 7.25800 7.45377 7.54203 7.66335 7.87644 7.97425 8.38814 9.24914 9.85968 10.51083 11.40614 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.002087 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.991961 B =13410.567338 C =14065.122558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.187 4.187 4 C 0.012 3.988 5 C -0.124 4.124 6 C -0.203 4.203 7 C 0.572 3.428 8 O -0.521 6.521 9 N -0.721 5.721 10 C 0.116 3.884 11 C -0.115 4.115 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.138 4.138 15 C 0.150 3.850 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.139 3.861 26 C 0.357 3.643 27 O -0.472 6.472 28 N -0.506 5.506 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.011 0.989 45 H 0.251 0.749 46 H 0.022 0.978 47 H 0.020 0.980 48 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.726 11.918 -3.682 29.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.207 4.207 4 C 0.004 3.996 5 C -0.181 4.181 6 C -0.210 4.210 7 C 0.356 3.644 8 O -0.396 6.396 9 N -0.373 5.373 10 C -0.007 4.007 11 C -0.154 4.154 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.177 4.177 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.209 4.209 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.013 3.987 26 C 0.177 3.823 27 O -0.279 6.279 28 N -0.226 5.226 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.029 0.971 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -26.497 11.012 -4.979 29.123 hybrid contribution 0.889 -0.219 0.659 1.128 sum -25.608 10.793 -4.319 28.123 Atomic orbital electron populations 1.20811 0.88064 1.04021 1.03584 1.21202 0.97042 0.87043 0.91644 1.21785 0.93594 0.99666 1.05692 1.20273 0.93699 0.94152 0.91521 1.20947 1.00133 0.93054 1.03942 1.20864 0.94994 0.94155 1.10940 1.17769 0.85930 0.76415 0.84287 1.90848 1.69091 1.48338 1.31277 1.46112 1.08254 1.74956 1.07950 1.21586 0.77657 1.03067 0.98380 1.21789 0.96731 1.02280 0.94560 1.22097 0.92393 0.98805 0.98414 0.90933 1.23034 1.00478 0.99754 0.94408 1.21926 0.90062 0.89329 0.96116 1.44526 1.32520 1.21361 1.34715 1.19146 1.07619 0.95544 1.12497 0.90468 1.24791 0.98898 0.98845 0.98364 1.69814 1.30184 1.35939 1.21299 0.86002 0.79810 0.82467 0.77280 1.20511 1.21787 1.21770 1.21364 0.90567 0.92568 0.94170 1.19015 0.86349 0.84507 0.92439 1.84777 1.76568 1.32560 1.34041 1.67069 1.09100 1.30438 1.16026 0.89792 0.90152 0.90036 0.83735 0.89488 0.90038 0.90634 0.76698 0.90582 0.91286 0.91639 0.91154 0.92507 0.92209 0.87690 0.97134 0.93854 0.95978 0.96241 0.73589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.16 36.00 0.37 -0.15 16 2 C 0.17 1.39 6.78 -82.53 -0.56 0.83 16 3 C -0.19 -1.32 9.41 -39.50 -0.37 -1.69 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 5 C -0.12 -0.83 9.69 36.00 0.35 -0.48 16 6 C -0.20 -2.24 5.66 -104.69 -0.59 -2.84 16 7 C 0.57 7.37 5.42 -12.47 -0.07 7.30 16 8 O -0.52 -9.09 17.11 5.28 0.09 -9.00 16 9 N -0.72 -7.50 5.55 -61.35 -0.34 -7.84 16 10 C 0.12 1.42 5.52 -4.04 -0.02 1.40 16 11 C -0.12 -1.39 4.72 -26.73 -0.13 -1.52 16 12 C -0.10 -1.59 2.98 -88.78 -0.26 -1.86 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.14 -2.50 6.53 -24.58 -0.16 -2.66 16 15 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 16 N -0.61 -15.68 3.39 -170.07 -0.58 -16.25 16 17 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 20 N -0.92 -27.15 10.09 55.49 0.56 -26.59 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.14 2.89 5.99 -3.06 -0.02 2.88 16 26 C 0.36 4.14 7.77 -16.61 -0.13 4.01 16 27 O -0.47 -5.40 13.01 -17.98 -0.23 -5.63 16 28 N -0.51 -5.59 10.28 -9.21 -0.09 -5.69 16 29 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 35 H 0.07 0.56 7.19 -51.93 -0.37 0.19 16 36 H 0.40 3.02 8.46 -40.82 -0.35 2.68 16 37 H 0.08 1.10 7.49 -51.93 -0.39 0.72 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.85 8.06 -51.93 -0.42 0.44 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 43 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.46 7.76 -51.93 -0.40 0.05 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.41 2.64 9.06 45.56 0.41 3.05 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -36.47 394.12 -9.01 -45.48 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.85 Total: 0.76 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.48 Total: 1.46 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.45 Total: -56.36 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.14 Total: -14.63 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.47 -9.01 -45.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494043891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.159 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds