Wall clock time and date at job start Tue Mar 31 2020 17:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38357 * 119.40979 * 2 1 4 4 C 1.38341 * 119.46285 * 179.67940 * 3 2 1 5 5 C 1.50698 * 120.83009 * 180.30046 * 4 3 2 6 6 C 1.39988 * 118.34281 * 0.55966 * 4 3 2 7 7 C 1.47528 * 120.59559 * 179.73553 * 6 4 3 8 8 O 1.21593 * 120.00046 * 269.72716 * 7 6 4 9 9 N 1.34777 * 119.99944 * 89.45272 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27861 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46988 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.64286 * 56.68527 * 12 11 10 14 14 C 1.55158 * 110.71725 * 180.02562 * 12 11 10 15 15 C 1.54910 * 101.57921 * 153.86282 * 14 12 11 16 16 N 1.47426 * 104.83373 * 322.99248 * 15 14 12 17 17 C 1.36933 * 125.64998 * 204.09443 * 16 15 14 18 18 H 1.07996 * 120.00559 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99719 * 0.03723 * 17 16 15 20 20 N 1.31616 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99917 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46993 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47293 * 120.00178 * 21 19 17 24 24 H 1.48502 * 109.47058 * 240.00223 * 21 19 17 25 25 C 1.47020 * 108.70499 * 24.12676 * 16 15 14 26 26 C 1.40279 * 118.80801 * 359.46636 * 6 4 3 27 27 O 1.35429 * 119.79730 * 180.27047 * 26 6 4 28 28 N 1.31883 * 119.40762 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47025 * 270.02321 * 1 2 3 30 30 H 1.09000 * 109.47370 * 30.01936 * 1 2 3 31 31 H 1.09000 * 109.47437 * 150.01753 * 1 2 3 32 32 H 1.08000 * 120.26804 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46964 * 270.26980 * 5 4 3 34 34 H 1.09000 * 109.47179 * 30.26938 * 5 4 3 35 35 H 1.08993 * 109.47225 * 150.27054 * 5 4 3 36 36 H 0.97000 * 119.99736 * 0.27136 * 9 7 6 37 37 H 1.08992 * 109.46803 * 299.99362 * 10 9 7 38 38 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 39 39 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 40 40 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 41 41 H 1.08998 * 111.00621 * 271.93489 * 14 12 11 42 42 H 1.08995 * 111.00289 * 35.79156 * 14 12 11 43 43 H 1.08999 * 110.36573 * 204.15031 * 15 14 12 44 44 H 1.09005 * 110.45929 * 81.87726 * 15 14 12 45 45 H 0.97005 * 119.99965 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.88557 * 239.52822 * 25 16 15 47 47 H 1.08995 * 110.01351 * 118.42689 * 25 16 15 48 48 H 0.96699 * 113.99931 * 90.00521 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0067 5 6 4.3408 2.5013 0.0137 6 6 4.2355 -0.0249 0.0013 7 6 5.7097 -0.0814 0.0022 8 8 6.3178 -0.1047 -1.0504 9 7 6.3825 -0.1018 1.1699 10 6 7.8467 -0.1518 1.1707 11 6 8.3557 -0.1653 2.6136 12 6 9.8848 -0.2181 2.6145 13 1 10.2985 0.6188 2.0520 14 6 10.4326 -0.2336 4.0661 15 6 11.7930 -0.9500 3.8774 16 7 11.5392 -1.9779 2.8515 17 6 12.2596 -3.1298 2.6806 18 1 11.9929 -3.8221 1.8958 19 6 13.3326 -3.4078 3.5162 20 7 13.6572 -2.5645 4.4732 21 14 14.3159 -4.9788 3.2826 22 1 13.7526 -5.7509 2.1460 23 1 15.7324 -4.6382 2.9953 24 1 14.2445 -5.7961 4.5204 25 6 10.3849 -1.5611 2.0419 26 6 3.4757 -1.2041 0.0008 27 8 4.0991 -2.4063 0.0012 28 7 2.1545 -1.1489 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6411 2.1375 -0.0004 33 1 4.5275 2.8185 -1.0123 34 1 3.7616 3.2663 0.5308 35 1 5.2909 2.3556 0.5276 36 1 5.8973 -0.0832 2.0096 37 1 8.1796 -1.0548 0.6593 38 1 8.2405 0.7240 0.6550 39 1 8.0226 0.7381 3.1247 40 1 7.9618 -1.0408 3.1296 41 1 10.5735 0.7800 4.4413 42 1 9.7782 -0.8048 4.7245 43 1 12.1092 -1.4155 4.8109 44 1 12.5494 -0.2461 3.5301 45 1 14.4073 -2.7586 5.0569 46 1 9.5954 -2.3097 2.1089 47 1 10.6857 -1.4318 1.0023 48 1 4.2795 -2.7555 0.8847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494043891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:55 Heat of formation + Delta-G solvation = -57.218546 kcal Electronic energy + Delta-G solvation = -28102.660431 eV Core-core repulsion = 24156.870087 eV Total energy + Delta-G solvation = -3945.790343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.05912 -40.37295 -39.38554 -38.47879 -36.52122 -35.32555 -34.73468 -32.90025 -32.42566 -30.79175 -29.55717 -28.56181 -27.91335 -26.53559 -24.62295 -23.65953 -22.79639 -21.94499 -21.67798 -20.76005 -19.56342 -18.90634 -18.86139 -18.25284 -17.34735 -17.07160 -16.63554 -16.59168 -15.96870 -15.75053 -15.53318 -15.19424 -14.83366 -14.66992 -14.27794 -14.22438 -14.05907 -13.93839 -13.78701 -13.54079 -13.35161 -13.24761 -13.12728 -13.00101 -12.83462 -12.81703 -12.72756 -12.63208 -12.24124 -11.98675 -11.79557 -11.68592 -11.44956 -11.35445 -11.19540 -10.76015 -10.63415 -10.53057 -10.21637 -9.87369 -8.88232 -7.78816 -5.22833 -0.31262 0.02215 1.35832 1.44353 1.45214 1.55820 1.99664 2.34902 2.48093 2.51778 3.29975 3.40452 3.54561 3.63319 3.72390 3.76280 3.93204 3.97480 4.16822 4.19202 4.26869 4.32577 4.35169 4.50644 4.58717 4.62759 4.65106 4.70906 4.73531 4.81805 4.88299 4.95635 5.00564 5.01774 5.09961 5.13494 5.17781 5.19375 5.25759 5.32826 5.43523 5.51489 5.51738 5.69648 5.83630 6.32120 6.35644 6.44138 6.79633 7.05746 7.11162 7.79096 8.42471 9.22861 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.002087 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.991961 B =13410.567338 C =14065.122558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.175 4.175 4 C 0.009 3.991 5 C -0.123 4.123 6 C -0.222 4.222 7 C 0.577 3.423 8 O -0.575 6.575 9 N -0.702 5.702 10 C 0.122 3.878 11 C -0.098 4.098 12 C -0.083 4.083 13 H 0.080 0.920 14 C -0.120 4.120 15 C 0.148 3.852 16 N -0.629 5.629 17 C -0.239 4.239 18 H 0.075 0.925 19 C -0.069 4.069 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.288 1.288 25 C 0.133 3.867 26 C 0.339 3.661 27 O -0.494 6.494 28 N -0.533 5.533 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.185 0.815 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.416 0.584 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.071 0.929 44 H -0.017 1.017 45 H 0.247 0.753 46 H 0.025 0.975 47 H 0.009 0.991 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.588 13.792 -3.067 32.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.023 3.977 3 C -0.194 4.194 4 C 0.001 3.999 5 C -0.179 4.179 6 C -0.229 4.229 7 C 0.363 3.637 8 O -0.455 6.455 9 N -0.353 5.353 10 C -0.001 4.001 11 C -0.136 4.136 12 C -0.103 4.103 13 H 0.098 0.902 14 C -0.159 4.159 15 C 0.023 3.977 16 N -0.355 5.355 17 C -0.369 4.369 18 H 0.093 0.907 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.194 1.194 23 H -0.219 1.219 24 H -0.214 1.214 25 C 0.008 3.992 26 C 0.160 3.840 27 O -0.304 6.304 28 N -0.254 5.254 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.202 0.798 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.253 0.747 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.001 0.999 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.027 0.973 48 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -29.403 12.892 -4.324 32.395 hybrid contribution 1.723 -0.786 0.449 1.946 sum -27.680 12.107 -3.875 30.459 Atomic orbital electron populations 1.20938 0.85616 1.04893 1.04811 1.21900 0.98673 0.86804 0.90302 1.22187 0.92909 1.00788 1.03562 1.20597 0.94654 0.93878 0.90743 1.21012 1.00013 0.92873 1.04035 1.20776 0.93603 0.95239 1.13241 1.18058 0.86753 0.75093 0.83822 1.90815 1.70374 1.51057 1.33215 1.45889 1.07517 1.73647 1.08290 1.21383 0.78657 1.01729 0.98379 1.21631 0.93184 1.04346 0.94476 1.22011 0.95334 0.96220 0.96735 0.90169 1.22869 0.96632 1.00645 0.95726 1.21778 0.93103 0.88785 0.94042 1.44871 1.33548 1.21091 1.36002 1.19477 1.08271 0.96660 1.12443 0.90676 1.25631 1.00090 1.02025 0.98366 1.70066 1.30383 1.37432 1.21902 0.84994 0.77948 0.78893 0.77408 1.19445 1.21891 1.21432 1.21576 0.89108 0.95230 0.93323 1.19156 0.86846 0.84480 0.93503 1.84727 1.76834 1.33114 1.35710 1.67115 1.08837 1.32164 1.17240 0.88220 0.87433 0.91009 0.79776 0.89842 0.86799 0.91595 0.74671 0.93306 0.91466 0.88009 0.90651 0.89423 0.91332 0.91085 0.99902 0.94312 0.95672 0.97265 0.71913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 71.23 0.72 0.02 16 2 C 0.16 2.28 6.78 42.58 0.29 2.57 16 3 C -0.18 -1.87 9.41 22.32 0.21 -1.66 16 4 C 0.01 0.14 5.95 -19.42 -0.12 0.02 16 5 C -0.12 -1.32 9.69 71.24 0.69 -0.63 16 6 C -0.22 -4.78 5.66 -19.91 -0.11 -4.89 16 7 C 0.58 14.82 5.42 86.69 0.47 15.29 16 8 O -0.58 -20.70 17.11 -4.01 -0.07 -20.77 16 9 N -0.70 -13.71 5.55 -466.27 -2.59 -16.30 16 10 C 0.12 2.85 5.52 86.38 0.48 3.33 16 11 C -0.10 -2.08 4.72 30.60 0.14 -1.94 16 12 C -0.08 -2.58 2.98 -9.60 -0.03 -2.61 16 13 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.12 -4.14 6.53 31.99 0.21 -3.93 16 15 C 0.15 7.32 5.89 86.86 0.51 7.83 16 16 N -0.63 -33.34 3.39 -691.99 -2.35 -35.69 16 17 C -0.24 -13.92 10.27 84.03 0.86 -13.06 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 20 N -0.95 -57.41 10.09 21.65 0.22 -57.19 16 21 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 C 0.13 5.55 5.99 86.73 0.52 6.07 16 26 C 0.34 7.87 7.77 85.13 0.66 8.53 16 27 O -0.49 -11.70 13.01 -87.24 -1.14 -12.83 16 28 N -0.53 -11.40 10.28 -296.06 -3.04 -14.45 16 29 H 0.10 0.38 8.14 -2.38 -0.02 0.37 16 30 H 0.11 0.14 8.07 -2.39 -0.02 0.12 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 0.46 8.10 -2.39 -0.02 0.44 16 35 H 0.07 0.84 7.19 -2.39 -0.02 0.83 16 36 H 0.42 5.34 8.46 -92.71 -0.78 4.56 16 37 H 0.05 1.43 7.49 -2.39 -0.02 1.41 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.07 1.59 8.06 -2.39 -0.02 1.57 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 43 H 0.07 4.01 5.87 -2.39 -0.01 3.99 16 44 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 45 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 46 H 0.03 1.04 7.76 -2.39 -0.02 1.02 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.42 5.78 9.06 -74.06 -0.67 5.11 16 Total: -1.00 -84.15 394.12 -1.43 -85.58 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.47 Total: 11.34 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.98 Total: 11.40 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -7.76 Total: -123.62 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.20 Total: -33.61 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -84.15 -1.43 -85.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494043891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.366 kcal (2) G-P(sol) polarization free energy of solvation -84.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds