Wall clock time and date at job start Tue Mar 31 2020 17:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.51899 * 2 1 4 4 C 1.34774 * 120.00001 * 60.00336 * 3 2 1 5 5 O 1.21623 * 120.00014 * 0.02562 * 4 3 2 6 6 C 1.43195 * 120.00302 * 179.97438 * 4 3 2 7 7 C 4.88636 * 102.23422 * 12.22197 * 2 1 3 8 8 C 6.32550 * 103.97191 * 9.47981 * 2 1 3 9 9 C 1.53002 * 117.49739 * 90.81125 * 8 7 6 10 10 C 1.53004 * 60.00222 * 252.50835 * 9 8 7 11 11 C 1.53120 * 109.52668 * 120.13009 * 2 1 3 12 12 C 1.53166 * 109.20873 * 177.56520 * 11 2 1 13 13 N 1.46850 * 109.55536 * 300.86082 * 12 11 2 14 14 C 1.46900 * 111.00065 * 185.84213 * 13 12 11 15 15 C 1.50702 * 109.47123 * 65.78651 * 14 13 12 16 16 O 1.21288 * 119.99846 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00042 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00394 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99812 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00382 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00066 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46951 * 89.99776 * 22 20 18 24 24 H 1.48495 * 109.47251 * 210.00171 * 22 20 18 25 25 H 1.48501 * 109.46871 * 330.00390 * 22 20 18 26 26 C 1.46845 * 111.20136 * 61.74122 * 13 12 11 27 27 C 1.53037 * 109.52234 * 298.25906 * 26 13 12 28 28 H 1.08998 * 109.47490 * 60.00076 * 1 2 3 29 29 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47035 * 299.99474 * 1 2 3 31 31 H 0.96997 * 119.99787 * 239.99606 * 3 2 1 32 32 H 1.08997 * 115.55159 * 236.51486 * 8 7 6 33 33 H 1.08993 * 117.49897 * 359.97438 * 9 8 7 34 34 H 1.09003 * 117.49871 * 145.02329 * 9 8 7 35 35 H 1.08999 * 117.49616 * 252.51310 * 10 9 8 36 36 H 1.08993 * 117.51933 * 107.47614 * 10 9 8 37 37 H 1.09004 * 109.49930 * 297.56723 * 11 2 1 38 38 H 1.08997 * 109.50353 * 57.67939 * 11 2 1 39 39 H 1.08998 * 109.44486 * 180.83114 * 12 11 2 40 40 H 1.09002 * 109.44668 * 60.88217 * 12 11 2 41 41 H 1.08998 * 109.47391 * 185.78792 * 14 13 12 42 42 H 1.08996 * 109.46872 * 305.78609 * 14 13 12 43 43 H 0.97006 * 119.99684 * 359.97438 * 17 15 14 44 44 H 0.97001 * 120.00614 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.45971 * 178.24274 * 26 13 12 46 46 H 1.08996 * 109.46142 * 58.27441 * 26 13 12 47 47 H 1.08996 * 109.50615 * 299.24026 * 27 26 13 48 48 H 1.09001 * 109.53207 * 179.13770 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3809 0.0000 4 6 1.6946 2.2110 1.0108 5 8 0.9955 1.8136 1.9233 6 6 2.1735 3.5605 1.0112 7 6 2.5654 4.6672 1.0109 8 6 3.0572 6.0545 1.0110 9 6 3.2752 6.7268 -0.3460 10 6 4.4778 6.3006 0.4984 11 6 2.0418 -0.7244 1.2482 12 6 3.5722 -0.7735 1.2103 13 7 4.0116 -1.4765 -0.0018 14 6 5.4686 -1.6640 -0.0026 15 6 5.8560 -2.5940 1.1182 16 8 5.0025 -3.0547 1.8463 17 7 7.1511 -2.9128 1.3121 18 6 7.5036 -3.7591 2.3313 19 1 6.7435 -4.1701 2.9792 20 6 8.8387 -4.0882 2.5308 21 7 9.7636 -3.5878 1.7429 22 14 9.3190 -5.2409 3.9201 23 1 9.3047 -6.6421 3.4281 24 1 10.6823 -4.8982 4.3987 25 1 8.3517 -5.0990 5.0378 26 6 3.5708 -0.7729 -1.2130 27 6 2.0417 -0.7243 -1.2483 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.5774 1.6976 -0.7275 32 1 2.7029 6.6789 1.8312 33 1 3.0548 6.1416 -1.2388 34 1 3.0642 7.7937 -0.4188 35 1 5.0578 7.0871 0.9812 36 1 5.0482 5.4350 0.1617 37 1 1.7152 -0.1885 2.1394 38 1 1.6457 -1.7397 1.2678 39 1 3.9401 -1.3015 2.0900 40 1 3.9678 0.2422 1.2046 41 1 5.7791 -2.0937 -0.9550 42 1 5.9589 -0.7008 0.1385 43 1 7.8338 -2.5439 0.7299 44 1 10.6957 -3.8172 1.8824 45 1 3.9379 -1.3006 -2.0933 46 1 3.9665 0.2427 -1.2073 47 1 1.6456 -1.7395 -1.2679 48 1 1.7146 -0.1887 -2.1395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499981355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:13 Heat of formation + Delta-G solvation = 14.063412 kcal Electronic energy + Delta-G solvation = -28509.116744 eV Core-core repulsion = 24566.417418 eV Total energy + Delta-G solvation = -3942.699326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71961 -38.76992 -38.03283 -37.57567 -35.10885 -33.81075 -33.26915 -31.72583 -31.20778 -30.74597 -29.01371 -26.14140 -25.29774 -24.08176 -23.17949 -22.91910 -22.62792 -21.44583 -19.28511 -19.15312 -19.01069 -17.83493 -17.01985 -16.15439 -15.80952 -15.61471 -15.26754 -15.21264 -14.95094 -14.61271 -14.41224 -13.94374 -13.88295 -13.62148 -13.57813 -13.03397 -12.83337 -12.55379 -12.39279 -12.12158 -12.09893 -12.02138 -11.96469 -11.71829 -11.57191 -11.47235 -11.23453 -11.03627 -10.98541 -10.64798 -10.47409 -10.42089 -10.36926 -10.19724 -10.07473 -9.85811 -9.45464 -9.19282 -8.38394 -7.95126 -7.80226 -6.39792 -3.80272 1.29024 2.01069 2.87226 3.05677 3.19390 3.27805 3.33964 3.68514 3.78617 3.92864 4.01904 4.26799 4.28210 4.46360 4.49852 4.66394 4.78563 4.91142 5.05213 5.09666 5.12136 5.24493 5.28978 5.33674 5.41313 5.49987 5.53671 5.57101 5.58078 5.66510 5.68192 5.79540 5.85975 5.88877 5.93898 6.03663 6.12901 6.21393 6.30768 6.41365 6.53560 6.61765 6.95377 7.30211 7.34425 7.46976 7.57389 7.99850 8.08926 8.64334 9.20580 9.56921 10.09054 10.78102 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.002650 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.664503 B =10564.564785 C =11997.274032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.174 3.826 3 N -0.707 5.707 4 C 0.635 3.365 5 O -0.516 6.516 6 C -0.216 4.216 7 C -0.057 4.057 8 C -0.067 4.067 9 C -0.159 4.159 10 C -0.158 4.158 11 C -0.123 4.123 12 C 0.057 3.943 13 N -0.513 5.513 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.053 3.947 27 C -0.115 4.115 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.399 0.601 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.018 0.982 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.077 0.923 46 H 0.025 0.975 47 H 0.092 0.908 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 18.656 -9.981 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.090 3.910 3 N -0.358 5.358 4 C 0.422 3.578 5 O -0.393 6.393 6 C -0.219 4.219 7 C -0.060 4.060 8 C -0.084 4.084 9 C -0.196 4.196 10 C -0.195 4.195 11 C -0.161 4.161 12 C -0.071 4.071 13 N -0.237 5.237 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.075 4.075 27 C -0.153 4.153 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.234 0.766 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.036 0.964 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.111 0.889 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.578 17.515 -8.831 23.856 hybrid contribution 1.540 0.662 -0.100 1.679 sum -12.038 18.177 -8.931 23.560 Atomic orbital electron populations 1.22203 0.93954 1.02821 1.03027 1.20553 0.94075 0.79391 0.97004 1.46032 1.53159 1.12136 1.24490 1.14612 0.79826 0.80982 0.82402 1.90814 1.37225 1.75742 1.35484 1.20783 1.03471 0.94000 1.03612 1.21338 0.94832 0.92477 0.97343 1.18917 1.01024 0.88057 1.00445 1.23103 1.01763 1.01403 0.93341 1.23124 0.89792 1.03970 1.02628 1.22024 0.95564 1.01089 0.97439 1.22224 0.94818 0.95337 0.94683 1.61534 1.11452 1.49236 1.01523 1.21830 0.88133 0.98591 0.99919 1.19743 0.83426 0.86256 0.87627 1.90490 1.49283 1.57037 1.49092 1.41869 1.05815 1.42639 1.29904 1.19695 0.92743 1.22096 1.08119 0.87927 1.25248 0.95420 0.98543 0.98770 1.69608 1.01402 1.44792 1.38688 0.85869 0.77748 0.79927 0.80824 1.20403 1.20972 1.19423 1.22101 0.95023 0.96287 0.94089 1.21886 0.95616 1.01940 0.95885 0.92854 0.91319 0.90379 0.76572 0.84755 0.88113 0.87357 0.87259 0.87951 0.89634 0.89888 0.87835 0.96403 0.89398 0.93751 0.77556 0.91927 0.90448 0.95649 0.88914 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.41 37.16 0.31 -1.47 16 2 C 0.17 2.06 0.66 -131.69 -0.09 1.97 16 3 N -0.71 -7.94 4.15 -49.90 -0.21 -8.15 16 4 C 0.64 8.67 7.07 -14.34 -0.10 8.57 16 5 O -0.52 -8.60 13.29 5.26 0.07 -8.53 16 6 C -0.22 -2.69 13.61 -38.84 -0.53 -3.22 16 7 C -0.06 -0.61 13.47 -37.12 -0.50 -1.11 16 8 C -0.07 -0.47 6.22 -93.40 -0.58 -1.05 16 9 C -0.16 -0.81 10.21 -26.73 -0.27 -1.09 16 10 C -0.16 -0.90 10.21 -26.72 -0.27 -1.18 16 11 C -0.12 -1.86 4.73 -26.58 -0.13 -1.98 16 12 C 0.06 0.98 4.96 -3.77 -0.02 0.96 16 13 N -0.51 -8.45 4.40 -236.03 -1.04 -9.49 16 14 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 15 C 0.44 10.55 7.46 -10.99 -0.08 10.46 16 16 O -0.58 -15.57 13.90 5.55 0.08 -15.49 16 17 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 18 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 22 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.05 0.64 5.30 -3.84 -0.02 0.62 16 27 C -0.12 -1.18 4.93 -26.65 -0.13 -1.31 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.02 6.17 -51.93 -0.32 0.70 16 31 H 0.40 3.63 7.44 -40.82 -0.30 3.32 16 32 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.42 6.12 -51.93 -0.32 1.10 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.10 2.21 5.78 -51.93 -0.30 1.91 16 40 H 0.02 0.30 7.69 -51.93 -0.40 -0.10 16 41 H 0.09 1.40 7.99 -51.93 -0.41 0.99 16 42 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 45 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 46 H 0.03 0.28 7.02 -51.93 -0.36 -0.09 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -33.37 391.93 -9.54 -42.91 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -7.32 Total: 12.08 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.68 Total: 2.99 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.58 Total: -56.11 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.15 Total: -24.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.37 -9.54 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499981355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.973 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds