Wall clock time and date at job start Tue Mar 31 2020 17:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35745 * 117.00036 * 2 1 4 4 C 1.39218 * 120.81398 * 359.97438 * 3 2 1 5 5 C 1.38306 * 119.28582 * 180.02562 * 4 3 2 6 6 N 1.31613 * 120.97505 * 0.02562 * 5 4 3 7 7 C 1.32800 * 121.78066 * 359.97438 * 6 5 4 8 8 C 1.48184 * 119.69842 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99652 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99846 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99648 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46991 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46072 * 60.02153 * 12 11 10 14 14 C 1.53046 * 109.45543 * 300.06789 * 12 11 10 15 15 C 1.53198 * 109.30936 * 178.61456 * 14 12 11 16 16 N 1.46924 * 108.77418 * 54.63592 * 15 14 12 17 17 C 1.36940 * 120.63427 * 126.41736 * 16 15 14 18 18 H 1.08007 * 119.99943 * 207.66615 * 17 16 15 19 19 C 1.38807 * 119.99856 * 27.65491 * 17 16 15 20 20 N 1.31621 * 120.00124 * 17.37078 * 19 17 16 21 21 Si 1.86797 * 120.00011 * 197.37275 * 19 17 16 22 22 H 1.48500 * 109.47256 * 60.00389 * 21 19 17 23 23 H 1.48507 * 109.47242 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47390 * 300.00197 * 21 19 17 25 25 C 1.46928 * 118.73900 * 306.38748 * 16 15 14 26 26 C 1.53040 * 109.45946 * 180.02562 * 12 11 10 27 27 C 1.39100 * 120.60189 * 0.26393 * 7 6 5 28 28 H 1.08999 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00532 * 1 2 3 30 30 H 1.08994 * 109.47309 * 60.00493 * 1 2 3 31 31 H 1.07996 * 120.35168 * 0.05015 * 4 3 2 32 32 H 1.08004 * 119.51303 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00139 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47424 * 60.00303 * 11 10 8 35 35 H 1.09004 * 109.47227 * 300.00112 * 11 10 8 36 36 H 1.09000 * 109.46578 * 60.00409 * 13 12 11 37 37 H 1.09002 * 109.46925 * 179.97438 * 13 12 11 38 38 H 1.08996 * 109.47419 * 300.00171 * 13 12 11 39 39 H 1.08997 * 109.49880 * 298.56068 * 14 12 11 40 40 H 1.08994 * 109.50048 * 58.66336 * 14 12 11 41 41 H 1.09000 * 109.58632 * 294.84547 * 15 14 12 42 42 H 1.08995 * 109.58616 * 174.41605 * 15 14 12 43 43 H 0.97004 * 120.00074 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.59022 * 293.82261 * 25 16 15 45 45 H 1.08996 * 109.70639 * 173.46986 * 25 16 15 46 46 H 1.08999 * 109.49301 * 301.33257 * 26 12 11 47 47 H 1.08993 * 109.49798 * 61.43444 * 26 12 11 48 48 H 1.07999 * 120.50740 * 179.71784 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9642 3.6029 -0.0011 6 7 3.2792 3.6590 -0.0016 7 6 4.0261 2.5610 -0.0011 8 6 5.5033 2.6780 -0.0023 9 8 6.1921 1.6769 -0.0023 10 7 6.0829 3.8948 -0.0033 11 6 7.5434 4.0104 -0.0050 12 6 7.9379 5.4887 -0.0053 13 6 7.3744 6.1669 1.2451 14 6 7.3693 6.1679 -1.2534 15 6 7.7369 7.6550 -1.2328 16 7 9.1936 7.7800 -1.0884 17 6 9.9214 8.5261 -1.9767 18 1 10.9571 8.2840 -2.1640 19 6 9.3278 9.5933 -2.6366 20 7 8.2044 10.1061 -2.1811 21 14 10.1232 10.3017 -4.1711 22 1 10.2198 9.2460 -5.2110 23 1 9.2987 11.4263 -4.6820 24 1 11.4837 10.7965 -3.8401 25 6 9.8548 7.0900 0.0276 26 6 9.4636 5.6092 -0.0077 27 6 3.4345 1.3021 -0.0055 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.2243 2.3532 -0.0001 32 1 1.3926 4.5192 -0.0011 33 1 5.5331 4.6939 -0.0029 34 1 7.9452 3.5267 -0.8953 35 1 7.9472 3.5271 0.8847 36 1 7.7787 5.6830 2.1343 37 1 7.6558 7.2200 1.2453 38 1 6.2879 6.0808 1.2468 39 1 7.7894 5.7017 -2.1445 40 1 6.2846 6.0613 -1.2633 41 1 7.2431 8.1418 -0.3918 42 1 7.4207 8.1224 -2.1653 43 1 7.7898 10.8521 -2.6420 44 1 9.5339 7.5307 0.9714 45 1 10.9362 7.1845 -0.0707 46 1 9.8697 5.1050 0.8692 47 1 9.8634 5.1484 -0.9108 48 1 4.0435 0.4102 -0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500439827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:16 Heat of formation + Delta-G solvation = -17.844426 kcal Electronic energy + Delta-G solvation = -28709.942809 eV Core-core repulsion = 24765.859856 eV Total energy + Delta-G solvation = -3944.082953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14929 -39.80340 -38.71634 -38.03830 -35.06145 -33.18640 -31.95940 -31.78931 -30.74809 -29.87319 -28.16554 -27.09776 -26.82035 -24.61268 -23.72644 -23.48923 -22.25660 -20.95302 -20.48307 -19.00644 -17.94384 -17.65692 -16.76229 -16.38420 -16.28750 -16.04474 -15.75779 -15.36306 -14.87896 -14.81381 -14.35476 -14.19183 -14.03815 -13.80846 -13.68295 -13.39414 -13.25718 -12.89004 -12.74012 -12.55099 -12.11409 -11.92984 -11.80865 -11.43351 -11.22312 -11.13232 -10.71520 -10.67323 -10.52429 -10.38225 -10.16867 -10.14226 -9.84095 -9.76183 -9.63111 -9.45929 -9.36349 -9.32388 -8.90174 -8.40227 -6.61091 -5.75077 -3.16197 0.33551 0.92205 2.51880 2.62668 3.21456 3.40870 3.46447 3.48240 3.63474 3.96320 4.18516 4.41859 4.53220 4.58733 4.60624 4.73517 4.92068 4.94351 5.10937 5.22496 5.24974 5.30656 5.41088 5.44860 5.57085 5.60852 5.83232 5.89171 5.95578 6.04574 6.15922 6.17216 6.20523 6.37485 6.47788 6.55595 6.61289 6.67054 6.69701 6.75510 6.83793 6.93520 7.04932 7.36832 7.42993 7.67800 7.72190 7.83478 8.19077 8.49437 9.25940 9.89826 10.46514 11.33249 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.002371 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.077325 B =11807.811453 C =12546.192905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.162 3.838 4 C -0.246 4.246 5 C 0.139 3.861 6 N -0.480 5.480 7 C 0.119 3.881 8 C 0.566 3.434 9 O -0.537 6.537 10 N -0.697 5.697 11 C 0.127 3.873 12 C -0.063 4.063 13 C -0.143 4.143 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.146 3.854 26 C -0.120 4.120 27 C -0.145 4.145 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.413 0.587 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.021 0.979 42 H 0.085 0.915 43 H 0.253 0.747 44 H 0.021 0.979 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 -16.784 6.617 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.267 4.267 5 C -0.021 4.021 6 N -0.195 5.195 7 C -0.018 4.018 8 C 0.350 3.650 9 O -0.414 6.414 10 N -0.348 5.348 11 C 0.004 3.996 12 C -0.064 4.064 13 C -0.200 4.200 14 C -0.170 4.170 15 C 0.046 3.954 16 N -0.314 5.314 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.020 3.980 26 C -0.160 4.160 27 C -0.167 4.167 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.803 -16.748 6.547 23.939 hybrid contribution -0.797 0.063 -0.841 1.161 sum -16.600 -16.685 5.706 24.218 Atomic orbital electron populations 1.23180 0.77493 1.04617 1.01780 1.86098 1.22073 1.25977 1.87771 1.19205 0.92118 0.84857 0.93013 1.22421 1.01840 0.93199 1.09200 1.22626 0.89627 0.97292 0.92510 1.67649 1.07405 1.31167 1.13242 1.21037 0.94529 0.88622 0.97617 1.17768 0.85619 0.84083 0.77513 1.90786 1.63370 1.36659 1.50553 1.45962 1.08612 1.08140 1.72097 1.21648 0.78472 0.97628 1.01894 1.20695 0.96896 0.91897 0.96902 1.21949 0.99686 1.02273 0.96100 1.22260 0.98209 1.00741 0.95787 1.20792 0.83827 0.89246 1.01545 1.44028 1.03106 1.56282 1.27981 1.19143 0.95775 1.06719 1.16353 0.91832 1.25010 0.98168 0.96167 1.00379 1.70023 1.20434 1.25085 1.39225 0.86393 0.78587 0.78260 0.83667 1.21110 1.21707 1.20954 1.20905 0.96326 0.89665 0.91137 1.22000 0.93280 0.99974 1.00705 1.21393 0.91968 0.99796 1.03563 0.87660 0.92181 0.92151 0.83856 0.81555 0.74852 0.91391 0.91619 0.93455 0.90708 0.93453 0.92589 0.93433 0.96054 0.89659 0.93674 0.96153 0.92955 0.92931 0.92103 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.09 16 2 O -0.31 -2.66 10.51 -18.94 -0.20 -2.86 16 3 C 0.16 1.57 6.73 -38.85 -0.26 1.30 16 4 C -0.25 -1.88 9.12 -39.19 -0.36 -2.24 16 5 C 0.14 1.22 11.17 -17.62 -0.20 1.02 16 6 N -0.48 -5.70 9.54 -9.87 -0.09 -5.80 16 7 C 0.12 1.56 6.75 -83.04 -0.56 1.00 16 8 C 0.57 8.53 7.81 -12.17 -0.10 8.43 16 9 O -0.54 -9.38 16.32 5.35 0.09 -9.29 16 10 N -0.70 -10.00 4.94 -61.14 -0.30 -10.30 16 11 C 0.13 1.89 4.56 -4.04 -0.02 1.87 16 12 C -0.06 -1.02 0.53 -154.46 -0.08 -1.10 16 13 C -0.14 -2.19 7.54 37.16 0.28 -1.91 16 14 C -0.13 -2.42 4.75 -26.61 -0.13 -2.55 16 15 C 0.17 3.97 4.84 -3.71 -0.02 3.95 16 16 N -0.59 -14.51 2.99 -172.32 -0.52 -15.02 16 17 C -0.25 -6.83 9.59 -15.06 -0.14 -6.97 16 18 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 19 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 21 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.15 2.99 6.04 -3.71 -0.02 2.97 16 26 C -0.12 -2.03 4.91 -26.61 -0.13 -2.16 16 27 C -0.15 -1.71 9.60 -38.89 -0.37 -2.09 16 28 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.18 7.71 -51.93 -0.40 -0.22 16 30 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 31 H 0.14 0.64 6.45 -52.49 -0.34 0.30 16 32 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.41 5.72 5.48 -40.82 -0.22 5.50 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.32 4.98 -51.93 -0.26 1.06 16 38 H 0.05 0.67 6.86 -51.93 -0.36 0.31 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.81 6.82 -51.93 -0.35 0.45 16 41 H 0.02 0.51 6.69 -51.93 -0.35 0.17 16 42 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.42 6.69 -51.93 -0.35 0.07 16 45 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.16 1.84 7.64 -52.49 -0.40 1.44 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -32.17 377.33 -8.03 -40.19 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.08 Total: 3.50 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.20 Total: 2.56 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.29 Total: -56.52 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.11 Total: -12.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.17 -8.03 -40.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500439827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.350 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds