Wall clock time and date at job start Tue Mar 31 2020 17:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35745 * 117.00036 * 2 1 4 4 C 1.39218 * 120.81398 * 359.97438 * 3 2 1 5 5 C 1.38306 * 119.28582 * 180.02562 * 4 3 2 6 6 N 1.31613 * 120.97505 * 0.02562 * 5 4 3 7 7 C 1.32800 * 121.78066 * 359.97438 * 6 5 4 8 8 C 1.48184 * 119.69842 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99652 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99846 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99648 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46991 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46072 * 60.02153 * 12 11 10 14 14 C 1.53046 * 109.45543 * 300.06789 * 12 11 10 15 15 C 1.53198 * 109.30936 * 178.61456 * 14 12 11 16 16 N 1.46924 * 108.77418 * 54.63592 * 15 14 12 17 17 C 1.36940 * 120.63427 * 126.41736 * 16 15 14 18 18 H 1.08007 * 119.99943 * 207.66615 * 17 16 15 19 19 C 1.38807 * 119.99856 * 27.65491 * 17 16 15 20 20 N 1.31621 * 120.00124 * 17.37078 * 19 17 16 21 21 Si 1.86797 * 120.00011 * 197.37275 * 19 17 16 22 22 H 1.48500 * 109.47256 * 60.00389 * 21 19 17 23 23 H 1.48507 * 109.47242 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47390 * 300.00197 * 21 19 17 25 25 C 1.46928 * 118.73900 * 306.38748 * 16 15 14 26 26 C 1.53040 * 109.45946 * 180.02562 * 12 11 10 27 27 C 1.39100 * 120.60189 * 0.26393 * 7 6 5 28 28 H 1.08999 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00532 * 1 2 3 30 30 H 1.08994 * 109.47309 * 60.00493 * 1 2 3 31 31 H 1.07996 * 120.35168 * 0.05015 * 4 3 2 32 32 H 1.08004 * 119.51303 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00139 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47424 * 60.00303 * 11 10 8 35 35 H 1.09004 * 109.47227 * 300.00112 * 11 10 8 36 36 H 1.09000 * 109.46578 * 60.00409 * 13 12 11 37 37 H 1.09002 * 109.46925 * 179.97438 * 13 12 11 38 38 H 1.08996 * 109.47419 * 300.00171 * 13 12 11 39 39 H 1.08997 * 109.49880 * 298.56068 * 14 12 11 40 40 H 1.08994 * 109.50048 * 58.66336 * 14 12 11 41 41 H 1.09000 * 109.58632 * 294.84547 * 15 14 12 42 42 H 1.08995 * 109.58616 * 174.41605 * 15 14 12 43 43 H 0.97004 * 120.00074 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.59022 * 293.82261 * 25 16 15 45 45 H 1.08996 * 109.70639 * 173.46986 * 25 16 15 46 46 H 1.08999 * 109.49301 * 301.33257 * 26 12 11 47 47 H 1.08993 * 109.49798 * 61.43444 * 26 12 11 48 48 H 1.07999 * 120.50740 * 179.71784 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9642 3.6029 -0.0011 6 7 3.2792 3.6590 -0.0016 7 6 4.0261 2.5610 -0.0011 8 6 5.5033 2.6780 -0.0023 9 8 6.1921 1.6769 -0.0023 10 7 6.0829 3.8948 -0.0033 11 6 7.5434 4.0104 -0.0050 12 6 7.9379 5.4887 -0.0053 13 6 7.3744 6.1669 1.2451 14 6 7.3693 6.1679 -1.2534 15 6 7.7369 7.6550 -1.2328 16 7 9.1936 7.7800 -1.0884 17 6 9.9214 8.5261 -1.9767 18 1 10.9571 8.2840 -2.1640 19 6 9.3278 9.5933 -2.6366 20 7 8.2044 10.1061 -2.1811 21 14 10.1232 10.3017 -4.1711 22 1 10.2198 9.2460 -5.2110 23 1 9.2987 11.4263 -4.6820 24 1 11.4837 10.7965 -3.8401 25 6 9.8548 7.0900 0.0276 26 6 9.4636 5.6092 -0.0077 27 6 3.4345 1.3021 -0.0055 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.2243 2.3532 -0.0001 32 1 1.3926 4.5192 -0.0011 33 1 5.5331 4.6939 -0.0029 34 1 7.9452 3.5267 -0.8953 35 1 7.9472 3.5271 0.8847 36 1 7.7787 5.6830 2.1343 37 1 7.6558 7.2200 1.2453 38 1 6.2879 6.0808 1.2468 39 1 7.7894 5.7017 -2.1445 40 1 6.2846 6.0613 -1.2633 41 1 7.2431 8.1418 -0.3918 42 1 7.4207 8.1224 -2.1653 43 1 7.7898 10.8521 -2.6420 44 1 9.5339 7.5307 0.9714 45 1 10.9362 7.1845 -0.0707 46 1 9.8697 5.1050 0.8692 47 1 9.8634 5.1484 -0.9108 48 1 4.0435 0.4102 -0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500439827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:15 Heat of formation + Delta-G solvation = -39.073978 kcal Electronic energy + Delta-G solvation = -28710.863391 eV Core-core repulsion = 24765.859856 eV Total energy + Delta-G solvation = -3945.003536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.94948 -40.90778 -39.89818 -38.98550 -36.62982 -34.72831 -32.92358 -32.71395 -32.21329 -31.55654 -28.83468 -28.52049 -27.99755 -26.09233 -24.76881 -24.44386 -23.84675 -22.44482 -21.65195 -19.94465 -19.53541 -18.43893 -18.22075 -17.45609 -16.94994 -16.93883 -16.79392 -16.66307 -16.47479 -15.80908 -15.57764 -15.47648 -15.13476 -15.08542 -15.00182 -14.78060 -14.47394 -14.33861 -14.03401 -13.42558 -13.39963 -13.14883 -12.92798 -12.66149 -12.54520 -12.52883 -12.36189 -12.32862 -12.22027 -11.89810 -11.78288 -11.49337 -11.44386 -11.08556 -11.02847 -10.70578 -10.46554 -10.43261 -10.06658 -9.99854 -8.60698 -7.83741 -5.27150 -0.48318 0.19381 1.47111 1.49483 1.55920 1.63855 1.81926 2.30934 2.53462 2.78038 3.09922 3.29684 3.57323 3.74312 3.78067 3.81272 3.87930 3.96110 3.96864 4.14151 4.33438 4.38331 4.43121 4.48591 4.54413 4.62587 4.67484 4.73539 4.75824 4.77934 4.86299 4.87115 4.91889 4.98585 5.10449 5.15109 5.27319 5.32882 5.33370 5.39894 5.42504 5.51578 5.58571 5.69481 5.87108 6.13030 6.36308 6.43428 6.76718 7.07342 7.19728 7.92600 8.43280 9.21892 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.002371 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.077325 B =11807.811453 C =12546.192905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.159 3.841 4 C -0.225 4.225 5 C 0.134 3.866 6 N -0.499 5.499 7 C 0.099 3.901 8 C 0.565 3.435 9 O -0.569 6.569 10 N -0.693 5.693 11 C 0.136 3.864 12 C -0.054 4.054 13 C -0.136 4.136 14 C -0.117 4.117 15 C 0.180 3.820 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.063 0.937 19 C -0.051 4.051 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.142 3.858 26 C -0.111 4.111 27 C -0.160 4.160 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.200 0.800 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.008 0.992 42 H 0.047 0.953 43 H 0.249 0.751 44 H 0.023 0.977 45 H 0.049 0.951 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.625 -17.889 7.214 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.105 3.895 4 C -0.246 4.246 5 C -0.025 4.025 6 N -0.214 5.214 7 C -0.038 4.038 8 C 0.351 3.649 9 O -0.448 6.448 10 N -0.344 5.344 11 C 0.013 3.987 12 C -0.054 4.054 13 C -0.193 4.193 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.081 0.919 19 C -0.246 4.246 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.202 1.202 25 C 0.017 3.983 26 C -0.151 4.151 27 C -0.183 4.183 28 H 0.140 0.860 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.200 0.800 32 H 0.217 0.783 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.072 0.928 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.672 -17.869 7.160 26.132 hybrid contribution -0.337 0.363 -0.985 1.102 sum -18.009 -17.507 6.176 25.864 Atomic orbital electron populations 1.23546 0.75064 1.06349 1.03194 1.86089 1.24576 1.25609 1.87492 1.19258 0.91519 0.86093 0.92657 1.22796 1.03609 0.91775 1.06406 1.23254 0.88743 0.99133 0.91325 1.67611 1.08967 1.30759 1.14103 1.20693 0.93436 0.89521 1.00116 1.18108 0.86692 0.83572 0.76561 1.90754 1.64426 1.37541 1.52099 1.45899 1.08308 1.08246 1.71956 1.21463 0.78994 0.96182 1.02049 1.20566 0.96288 0.92612 0.95941 1.21866 1.00542 1.00598 0.96325 1.22047 0.99294 0.97500 0.96755 1.20570 0.83298 0.91733 0.98908 1.44286 1.03592 1.56447 1.28963 1.19457 0.96039 1.06748 1.16874 0.91939 1.25725 0.98988 0.96901 1.03031 1.70169 1.21779 1.25577 1.40298 0.85412 0.77829 0.77321 0.80309 1.20807 1.22000 1.20200 1.21052 0.95953 0.91476 0.89816 1.21888 0.93904 0.97376 1.01904 1.21365 0.93353 0.98981 1.04566 0.86033 0.90597 0.90737 0.79996 0.78296 0.74490 0.92214 0.90553 0.91422 0.93237 0.92308 0.93874 0.91815 0.97448 0.93445 0.94199 0.95938 0.93206 0.89730 0.92767 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.84 113.37 1.12 1.18 16 2 O -0.33 -5.04 10.51 -90.69 -0.95 -5.99 16 3 C 0.16 2.81 6.73 22.75 0.15 2.96 16 4 C -0.23 -2.72 9.12 22.52 0.21 -2.51 16 5 C 0.13 1.98 11.17 84.74 0.95 2.93 16 6 N -0.50 -11.17 9.54 -185.14 -1.77 -12.93 16 7 C 0.10 2.55 6.75 41.85 0.28 2.83 16 8 C 0.57 17.01 7.81 86.89 0.68 17.69 16 9 O -0.57 -20.16 16.32 -3.77 -0.06 -20.23 16 10 N -0.69 -19.34 4.94 -465.63 -2.30 -21.64 16 11 C 0.14 3.89 4.56 86.38 0.39 4.29 16 12 C -0.05 -1.66 0.53 -52.15 -0.03 -1.69 16 13 C -0.14 -3.96 7.54 71.98 0.54 -3.42 16 14 C -0.12 -4.34 4.75 30.68 0.15 -4.19 16 15 C 0.18 8.58 4.84 86.36 0.42 8.99 16 16 N -0.61 -30.44 2.99 -699.09 -2.09 -32.53 16 17 C -0.26 -14.48 9.59 84.03 0.81 -13.67 16 18 H 0.06 3.41 7.89 -2.91 -0.02 3.38 16 19 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 20 N -0.93 -55.21 11.19 21.65 0.24 -54.97 16 21 Si 0.96 45.48 29.59 68.60 2.03 47.51 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C 0.14 5.79 6.04 86.36 0.52 6.31 16 26 C -0.11 -3.62 4.91 30.67 0.15 -3.47 16 27 C -0.16 -3.78 9.60 22.72 0.22 -3.56 16 28 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.08 0.17 7.71 -2.39 -0.02 0.15 16 30 H 0.07 0.19 7.71 -2.39 -0.02 0.17 16 31 H 0.18 0.70 6.45 -2.91 -0.02 0.68 16 32 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.42 11.09 5.48 -92.71 -0.51 10.58 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.71 4.98 -2.39 -0.01 1.70 16 38 H 0.06 1.57 6.86 -2.39 -0.02 1.55 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 2.14 6.82 -2.39 -0.02 2.12 16 41 H 0.01 0.37 6.69 -2.39 -0.02 0.36 16 42 H 0.05 2.60 6.04 -2.39 -0.01 2.59 16 43 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.02 0.92 6.69 -2.39 -0.02 0.90 16 45 H 0.05 2.01 7.94 -2.39 -0.02 1.99 16 46 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.14 3.57 7.64 -2.91 -0.02 3.55 16 Total: -1.00 -72.30 377.33 2.54 -69.76 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.47 Total: 18.82 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.97 Total: 12.19 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -5.92 Total: -122.07 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.01 Total: -26.22 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.30 2.54 -69.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500439827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.689 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds