Wall clock time and date at job start Tue Mar 31 2020 17:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38364 * 119.40742 * 2 1 4 4 C 1.38332 * 119.45583 * 180.25638 * 3 2 1 5 5 C 1.50705 * 120.81978 * 179.75389 * 4 3 2 6 6 C 1.39978 * 118.35317 * 359.47955 * 4 3 2 7 7 C 1.47524 * 120.60133 * 180.22965 * 6 4 3 8 8 O 1.21592 * 119.99970 * 89.99344 * 7 6 4 9 9 N 1.34769 * 120.00178 * 269.99895 * 7 6 4 10 10 C 1.47023 * 125.64852 * 0.02759 * 9 7 6 11 11 C 1.54326 * 107.27291 * 181.02046 * 10 9 7 12 12 C 1.55160 * 102.93990 * 22.18886 * 11 10 9 13 13 H 1.09002 * 111.00591 * 82.57821 * 12 11 10 14 14 C 1.53004 * 111.00159 * 206.38669 * 12 11 10 15 15 H 1.08995 * 109.47050 * 60.78866 * 14 12 11 16 16 C 1.53001 * 109.47184 * 180.79690 * 14 12 11 17 17 N 1.46507 * 109.46927 * 300.79335 * 14 12 11 18 18 C 1.36937 * 119.99507 * 155.00371 * 17 14 12 19 19 H 1.08001 * 120.00134 * 359.97438 * 18 17 14 20 20 C 1.38813 * 119.99537 * 179.97438 * 18 17 14 21 21 N 1.31623 * 120.00044 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00162 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47227 * 89.99843 * 22 20 18 24 24 H 1.48500 * 109.46984 * 209.99606 * 22 20 18 25 25 H 1.48495 * 109.47100 * 330.00216 * 22 20 18 26 26 C 1.47431 * 125.65052 * 179.70921 * 9 7 6 27 27 C 1.40283 * 118.80482 * 0.24860 * 6 4 3 28 28 O 1.35424 * 119.79981 * 180.02562 * 27 6 4 29 29 N 1.31875 * 119.41011 * 179.72268 * 2 1 3 30 30 H 1.09008 * 109.46739 * 270.27813 * 1 2 3 31 31 H 1.08997 * 109.47410 * 30.27726 * 1 2 3 32 32 H 1.08999 * 109.47174 * 150.27728 * 1 2 3 33 33 H 1.08001 * 120.27080 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.46813 * 269.71716 * 5 4 3 35 35 H 1.09000 * 109.46888 * 149.72273 * 5 4 3 36 36 H 1.08994 * 109.47355 * 29.71989 * 5 4 3 37 37 H 1.09005 * 109.87992 * 300.43308 * 10 9 7 38 38 H 1.08998 * 109.88564 * 61.44244 * 10 9 7 39 39 H 1.09000 * 110.72075 * 140.54838 * 11 10 9 40 40 H 1.09001 * 110.71971 * 263.64782 * 11 10 9 41 41 H 1.09001 * 109.46438 * 294.74983 * 16 14 12 42 42 H 1.08995 * 109.47358 * 54.74298 * 16 14 12 43 43 H 1.08991 * 109.47104 * 174.75187 * 16 14 12 44 44 H 0.96996 * 120.00035 * 334.99969 * 17 14 12 45 45 H 0.96994 * 120.00125 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.36717 * 274.75015 * 26 9 7 47 47 H 1.09000 * 110.36052 * 37.07657 * 26 9 7 48 48 H 0.96705 * 114.00502 * 90.00189 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2065 -0.0054 5 6 4.3407 2.5014 -0.0111 6 6 4.2356 -0.0247 0.0005 7 6 5.7097 -0.0813 0.0002 8 8 6.3176 -0.0993 1.0531 9 7 6.3827 -0.1130 -1.1670 10 6 5.7765 -0.0959 -2.5063 11 6 6.9277 -0.1717 -3.5313 12 6 8.0848 -0.7974 -2.7086 13 1 7.9938 -1.8829 -2.6693 14 6 9.4453 -0.3842 -3.2737 15 1 9.5444 0.7001 -3.2258 16 6 10.5586 -1.0352 -2.4503 17 7 9.5487 -0.8229 -4.6677 18 6 10.3886 -0.1704 -5.5302 19 1 10.9744 0.6679 -5.1830 20 6 10.4869 -0.5864 -6.8509 21 7 11.2938 0.0411 -7.6802 22 14 9.4742 -2.0366 -7.4513 23 1 8.1673 -1.5502 -7.9620 24 1 10.2038 -2.7322 -8.5417 25 1 9.2463 -2.9802 -6.3275 26 6 7.8489 -0.1639 -1.3124 27 6 3.4758 -1.2040 0.0062 28 8 4.0992 -2.4062 0.0125 29 7 2.1546 -1.1488 0.0056 30 1 -0.3633 0.0050 1.0277 31 1 -0.3634 0.8874 -0.5181 32 1 -0.3633 -0.8924 -0.5095 33 1 1.6412 2.1376 -0.0004 34 1 4.5269 2.8088 -1.0402 35 1 5.2912 2.3606 0.5036 36 1 3.7618 3.2713 0.4990 37 1 5.1168 -0.9554 -2.6256 38 1 5.2125 0.8263 -2.6462 39 1 6.6572 -0.8158 -4.3680 40 1 7.1962 0.8241 -3.8841 41 1 10.5394 -0.6379 -1.4355 42 1 10.4056 -2.1139 -2.4211 43 1 11.5236 -0.8172 -2.9077 44 1 9.0223 -1.5756 -4.9796 45 1 11.3628 -0.2498 -8.6029 46 1 8.2691 0.8410 -1.2733 47 1 8.2857 -0.7893 -0.5338 48 1 4.2800 -2.7510 0.8977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501064056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:22 Heat of formation + Delta-G solvation = -29.893406 kcal Electronic energy + Delta-G solvation = -29190.526648 eV Core-core repulsion = 25245.921212 eV Total energy + Delta-G solvation = -3944.605436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31373 -39.74358 -37.88368 -37.66045 -35.38812 -34.56731 -32.47916 -32.10837 -30.75249 -29.72789 -28.86644 -28.02330 -27.45321 -24.73682 -23.64583 -22.84668 -21.82400 -21.40931 -19.88395 -19.74521 -18.75999 -17.86322 -17.65213 -17.30522 -16.34916 -15.89858 -15.71181 -14.93537 -14.71454 -14.42622 -14.18851 -13.86918 -13.74087 -13.63108 -13.44286 -13.39013 -13.08761 -12.86301 -12.74159 -12.64992 -12.49308 -12.36321 -12.28029 -12.15583 -11.97517 -11.91264 -11.55617 -11.01639 -10.83355 -10.61189 -10.54836 -10.44564 -10.26684 -9.99025 -9.91265 -9.68304 -9.60030 -9.16698 -8.95935 -8.73217 -7.29772 -5.78824 -3.14345 0.41603 0.71853 2.33623 2.80071 2.97285 3.33881 3.35458 3.38538 3.44111 4.02765 4.12660 4.25141 4.57068 4.59717 4.67525 4.69204 4.80320 4.91166 4.97328 5.00202 5.13408 5.16233 5.19820 5.23878 5.39146 5.43401 5.46672 5.55028 5.58649 5.62138 5.65171 5.75454 5.79772 5.83009 5.93845 6.04568 6.09623 6.12071 6.22228 6.32280 6.42084 6.49414 6.76638 7.00103 7.08739 7.35221 7.49938 7.92868 7.97332 8.40200 9.18622 9.91170 10.11017 11.39567 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.002812 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.119358 B = 9953.408506 C =10422.794339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.186 4.186 4 C 0.011 3.989 5 C -0.126 4.126 6 C -0.195 4.195 7 C 0.590 3.410 8 O -0.538 6.538 9 N -0.602 5.602 10 C 0.099 3.901 11 C -0.117 4.117 12 C -0.106 4.106 13 H 0.081 0.919 14 C 0.191 3.809 15 H 0.058 0.942 16 C -0.168 4.168 17 N -0.746 5.746 18 C -0.240 4.240 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C 0.115 3.885 27 C 0.355 3.645 28 O -0.475 6.475 29 N -0.506 5.506 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 2.587 17.759 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.206 4.206 4 C 0.003 3.997 5 C -0.182 4.182 6 C -0.201 4.201 7 C 0.377 3.623 8 O -0.415 6.415 9 N -0.334 5.334 10 C -0.024 4.024 11 C -0.155 4.155 12 C -0.126 4.126 13 H 0.100 0.900 14 C 0.081 3.919 15 H 0.076 0.924 16 C -0.228 4.228 17 N -0.389 5.389 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.582 5.582 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.007 4.007 27 C 0.176 3.824 28 O -0.283 6.283 29 N -0.226 5.226 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -21.302 1.984 17.667 27.746 hybrid contribution -0.142 -0.592 -0.203 0.642 sum -21.444 1.391 17.463 27.690 Atomic orbital electron populations 1.20805 0.88073 1.04024 1.03514 1.21188 0.97015 0.87040 0.91837 1.21786 0.93562 0.99672 1.05589 1.20265 0.93695 0.94177 0.91537 1.20960 1.00468 0.93033 1.03740 1.20831 0.94768 0.94168 1.10382 1.17351 0.85804 0.76313 0.82822 1.90818 1.69336 1.50882 1.30504 1.48472 1.08122 1.71278 1.05511 1.22160 0.97054 1.01375 0.81770 1.22593 0.93097 1.03129 0.96694 1.22774 0.96544 1.00301 0.92994 0.90014 1.20101 0.89609 0.97513 0.84696 0.92353 1.22459 1.01407 1.00439 0.98525 1.42741 1.52204 1.37830 1.06136 1.19044 1.16740 1.11079 0.90130 0.89206 1.24656 0.99367 0.98899 0.96185 1.69696 1.40759 1.42730 1.05043 0.86586 0.80252 0.83542 0.78356 1.21106 1.21836 1.20321 1.22389 0.79003 1.01401 0.97940 1.18983 0.86330 0.84390 0.92732 1.84705 1.76640 1.32701 1.34208 1.67051 1.09054 1.30446 1.16044 0.89881 0.90133 0.90052 0.83731 0.89564 0.90439 0.90024 0.91552 0.91729 0.89897 0.89611 0.94055 0.93663 0.92049 0.80694 0.93079 0.90771 0.90208 0.73461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 2 C 0.17 1.50 6.78 -82.53 -0.56 0.94 16 3 C -0.19 -1.48 9.41 -39.50 -0.37 -1.86 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -1.01 9.69 36.01 0.35 -0.66 16 6 C -0.19 -2.37 4.84 -104.69 -0.51 -2.88 16 7 C 0.59 8.30 5.45 -12.48 -0.07 8.23 16 8 O -0.54 -9.06 17.36 5.28 0.09 -8.97 16 9 N -0.60 -8.03 3.32 -171.61 -0.57 -8.60 16 10 C 0.10 1.22 6.47 -3.06 -0.02 1.20 16 11 C -0.12 -1.61 6.06 -24.89 -0.15 -1.77 16 12 C -0.11 -1.55 2.63 -88.35 -0.23 -1.79 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.19 3.38 2.43 -67.92 -0.16 3.21 16 15 H 0.06 1.07 7.99 -51.93 -0.42 0.65 16 16 C -0.17 -2.83 9.29 37.16 0.35 -2.49 16 17 N -0.75 -16.55 4.56 -53.42 -0.24 -16.80 16 18 C -0.24 -6.48 10.41 -15.06 -0.16 -6.63 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -28.82 13.97 55.49 0.78 -28.05 16 22 Si 0.88 21.63 27.73 -169.99 -4.71 16.91 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 26 C 0.11 1.56 5.75 -2.41 -0.01 1.55 16 27 C 0.36 4.37 7.77 -16.61 -0.13 4.24 16 28 O -0.47 -5.60 13.01 -17.96 -0.23 -5.83 16 29 N -0.51 -5.92 10.28 -9.21 -0.09 -6.01 16 30 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.77 7.19 -51.93 -0.37 0.39 16 36 H 0.08 0.47 8.10 -51.93 -0.42 0.04 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 41 H 0.04 0.59 7.75 -51.93 -0.40 0.19 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.36 7.95 5.66 -40.82 -0.23 7.72 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.07 0.98 7.98 -51.93 -0.41 0.56 16 47 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 48 H 0.41 3.11 9.06 45.56 0.41 3.52 16 LS Contribution 395.16 15.07 5.95 5.95 Total: -1.00 -34.55 395.16 -7.98 -42.53 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.92 Total: 8.25 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.03 Total: 0.61 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.13 Total: -59.45 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.14 Total: -14.80 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.55 -7.98 -42.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501064056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.635 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds