Wall clock time and date at job start Tue Mar 31 2020 17:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38364 * 119.40742 * 2 1 4 4 C 1.38332 * 119.45583 * 180.25638 * 3 2 1 5 5 C 1.50705 * 120.81978 * 179.75389 * 4 3 2 6 6 C 1.39978 * 118.35317 * 359.47955 * 4 3 2 7 7 C 1.47524 * 120.60133 * 180.22965 * 6 4 3 8 8 O 1.21592 * 119.99970 * 89.99344 * 7 6 4 9 9 N 1.34769 * 120.00178 * 269.99895 * 7 6 4 10 10 C 1.47023 * 125.64852 * 0.02759 * 9 7 6 11 11 C 1.54326 * 107.27291 * 181.02046 * 10 9 7 12 12 C 1.55160 * 102.93990 * 22.18886 * 11 10 9 13 13 H 1.09002 * 111.00591 * 82.57821 * 12 11 10 14 14 C 1.53004 * 111.00159 * 206.38669 * 12 11 10 15 15 H 1.08995 * 109.47050 * 60.78866 * 14 12 11 16 16 C 1.53001 * 109.47184 * 180.79690 * 14 12 11 17 17 N 1.46507 * 109.46927 * 300.79335 * 14 12 11 18 18 C 1.36937 * 119.99507 * 155.00371 * 17 14 12 19 19 H 1.08001 * 120.00134 * 359.97438 * 18 17 14 20 20 C 1.38813 * 119.99537 * 179.97438 * 18 17 14 21 21 N 1.31623 * 120.00044 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00162 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47227 * 89.99843 * 22 20 18 24 24 H 1.48500 * 109.46984 * 209.99606 * 22 20 18 25 25 H 1.48495 * 109.47100 * 330.00216 * 22 20 18 26 26 C 1.47431 * 125.65052 * 179.70921 * 9 7 6 27 27 C 1.40283 * 118.80482 * 0.24860 * 6 4 3 28 28 O 1.35424 * 119.79981 * 180.02562 * 27 6 4 29 29 N 1.31875 * 119.41011 * 179.72268 * 2 1 3 30 30 H 1.09008 * 109.46739 * 270.27813 * 1 2 3 31 31 H 1.08997 * 109.47410 * 30.27726 * 1 2 3 32 32 H 1.08999 * 109.47174 * 150.27728 * 1 2 3 33 33 H 1.08001 * 120.27080 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.46813 * 269.71716 * 5 4 3 35 35 H 1.09000 * 109.46888 * 149.72273 * 5 4 3 36 36 H 1.08994 * 109.47355 * 29.71989 * 5 4 3 37 37 H 1.09005 * 109.87992 * 300.43308 * 10 9 7 38 38 H 1.08998 * 109.88564 * 61.44244 * 10 9 7 39 39 H 1.09000 * 110.72075 * 140.54838 * 11 10 9 40 40 H 1.09001 * 110.71971 * 263.64782 * 11 10 9 41 41 H 1.09001 * 109.46438 * 294.74983 * 16 14 12 42 42 H 1.08995 * 109.47358 * 54.74298 * 16 14 12 43 43 H 1.08991 * 109.47104 * 174.75187 * 16 14 12 44 44 H 0.96996 * 120.00035 * 334.99969 * 17 14 12 45 45 H 0.96994 * 120.00125 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.36717 * 274.75015 * 26 9 7 47 47 H 1.09000 * 110.36052 * 37.07657 * 26 9 7 48 48 H 0.96705 * 114.00502 * 90.00189 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2065 -0.0054 5 6 4.3407 2.5014 -0.0111 6 6 4.2356 -0.0247 0.0005 7 6 5.7097 -0.0813 0.0002 8 8 6.3176 -0.0993 1.0531 9 7 6.3827 -0.1130 -1.1670 10 6 5.7765 -0.0959 -2.5063 11 6 6.9277 -0.1717 -3.5313 12 6 8.0848 -0.7974 -2.7086 13 1 7.9938 -1.8829 -2.6693 14 6 9.4453 -0.3842 -3.2737 15 1 9.5444 0.7001 -3.2258 16 6 10.5586 -1.0352 -2.4503 17 7 9.5487 -0.8229 -4.6677 18 6 10.3886 -0.1704 -5.5302 19 1 10.9744 0.6679 -5.1830 20 6 10.4869 -0.5864 -6.8509 21 7 11.2938 0.0411 -7.6802 22 14 9.4742 -2.0366 -7.4513 23 1 8.1673 -1.5502 -7.9620 24 1 10.2038 -2.7322 -8.5417 25 1 9.2463 -2.9802 -6.3275 26 6 7.8489 -0.1639 -1.3124 27 6 3.4758 -1.2040 0.0062 28 8 4.0992 -2.4062 0.0125 29 7 2.1546 -1.1488 0.0056 30 1 -0.3633 0.0050 1.0277 31 1 -0.3634 0.8874 -0.5181 32 1 -0.3633 -0.8924 -0.5095 33 1 1.6412 2.1376 -0.0004 34 1 4.5269 2.8088 -1.0402 35 1 5.2912 2.3606 0.5036 36 1 3.7618 3.2713 0.4990 37 1 5.1168 -0.9554 -2.6256 38 1 5.2125 0.8263 -2.6462 39 1 6.6572 -0.8158 -4.3680 40 1 7.1962 0.8241 -3.8841 41 1 10.5394 -0.6379 -1.4355 42 1 10.4056 -2.1139 -2.4211 43 1 11.5236 -0.8172 -2.9077 44 1 9.0223 -1.5756 -4.9796 45 1 11.3628 -0.2498 -8.6029 46 1 8.2691 0.8410 -1.2733 47 1 8.2857 -0.7893 -0.5338 48 1 4.2800 -2.7510 0.8977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501064056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:21 Heat of formation + Delta-G solvation = -56.189460 kcal Electronic energy + Delta-G solvation = -29191.666930 eV Core-core repulsion = 25245.921212 eV Total energy + Delta-G solvation = -3945.745719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15130 -40.76735 -39.09237 -38.46366 -36.93248 -35.31455 -34.25941 -32.88391 -32.17132 -31.16703 -29.78160 -28.86359 -28.34834 -26.15063 -24.89486 -23.94986 -22.81456 -22.54411 -21.34450 -20.71889 -19.59823 -19.54951 -18.68685 -18.29480 -17.49825 -16.88420 -16.70064 -16.50860 -15.76414 -15.40858 -15.34977 -15.03227 -14.90140 -14.74037 -14.31519 -14.25501 -14.10323 -14.00202 -13.97273 -13.83440 -13.53704 -13.44565 -13.26321 -13.02020 -12.97943 -12.85367 -12.83547 -12.65434 -12.38127 -12.07791 -11.93024 -11.76966 -11.69682 -11.51643 -11.38451 -10.96019 -10.66538 -10.52035 -9.88779 -9.81906 -9.28945 -7.98161 -5.30572 -0.32807 0.00461 1.28929 1.40294 1.42720 1.49942 1.79903 2.26481 2.51539 2.59445 3.13913 3.33689 3.38793 3.52012 3.54460 3.56884 3.77202 3.94832 4.03095 4.15663 4.19613 4.25194 4.29555 4.43730 4.48830 4.54084 4.55116 4.61422 4.63305 4.68082 4.80520 4.82462 4.91953 4.93967 4.98460 5.00204 5.07391 5.09922 5.10371 5.17072 5.25684 5.33991 5.49433 5.56932 5.82386 6.25678 6.29659 6.37264 6.77465 6.86803 7.12452 7.88585 8.07793 9.23605 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.002812 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.119358 B = 9953.408506 C =10422.794339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.175 4.175 4 C 0.006 3.994 5 C -0.123 4.123 6 C -0.217 4.217 7 C 0.595 3.405 8 O -0.573 6.573 9 N -0.601 5.601 10 C 0.109 3.891 11 C -0.115 4.115 12 C -0.096 4.096 13 H 0.084 0.916 14 C 0.187 3.813 15 H 0.051 0.949 16 C -0.162 4.162 17 N -0.747 5.747 18 C -0.218 4.218 19 H 0.058 0.942 20 C -0.065 4.065 21 N -0.986 5.986 22 Si 0.950 3.050 23 H -0.276 1.276 24 H -0.302 1.302 25 H -0.254 1.254 26 C 0.119 3.881 27 C 0.341 3.659 28 O -0.491 6.491 29 N -0.530 5.530 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.184 0.816 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.364 0.636 45 H 0.256 0.744 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.522 2.800 18.801 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.023 3.977 3 C -0.194 4.194 4 C -0.002 4.002 5 C -0.179 4.179 6 C -0.223 4.223 7 C 0.383 3.617 8 O -0.453 6.453 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.153 4.153 12 C -0.116 4.116 13 H 0.102 0.898 14 C 0.079 3.921 15 H 0.069 0.931 16 C -0.221 4.221 17 N -0.390 5.390 18 C -0.349 4.349 19 H 0.076 0.924 20 C -0.256 4.256 21 N -0.638 5.638 22 Si 0.778 3.222 23 H -0.202 1.202 24 H -0.230 1.230 25 H -0.178 1.178 26 C -0.003 4.003 27 C 0.162 3.838 28 O -0.301 6.301 29 N -0.250 5.250 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.201 0.799 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.198 0.802 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -24.527 2.184 18.764 30.959 hybrid contribution 0.826 -0.567 -0.416 1.085 sum -23.701 1.618 18.348 30.017 Atomic orbital electron populations 1.20933 0.85547 1.05019 1.04685 1.21889 0.98676 0.86751 0.90354 1.22173 0.92781 1.00872 1.03571 1.20570 0.94720 0.93850 0.91017 1.20997 0.99602 0.92980 1.04339 1.20758 0.93403 0.95327 1.12831 1.17627 0.86640 0.75227 0.82218 1.90787 1.70332 1.52556 1.31673 1.48493 1.07928 1.70935 1.05923 1.22107 0.96346 1.02342 0.80562 1.22554 0.93233 1.02582 0.96943 1.22563 0.94845 1.00488 0.93673 0.89756 1.20260 0.91884 0.97199 0.82736 0.93051 1.22347 0.99357 1.00828 0.99608 1.42715 1.51317 1.37587 1.07350 1.18979 1.15697 1.09616 0.90632 0.92439 1.25427 1.01278 1.02304 0.96574 1.69879 1.43439 1.45137 1.05311 0.85483 0.78515 0.80265 0.77950 1.20174 1.22974 1.17845 1.22288 0.79584 1.01504 0.96959 1.19097 0.86782 0.84381 0.93538 1.84649 1.76839 1.33009 1.35557 1.67116 1.08743 1.32039 1.17145 0.88474 0.87405 0.90771 0.79882 0.88666 0.92740 0.87256 0.91576 0.89906 0.89998 0.90237 0.91289 0.93108 0.94660 0.80246 0.93555 0.90295 0.90477 0.72091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.16 71.24 0.72 -0.08 16 2 C 0.16 2.47 6.78 42.58 0.29 2.75 16 3 C -0.17 -2.17 9.41 22.32 0.21 -1.96 16 4 C 0.01 0.11 5.95 -19.42 -0.12 -0.01 16 5 C -0.12 -1.67 9.69 71.24 0.69 -0.98 16 6 C -0.22 -5.05 4.84 -19.91 -0.10 -5.14 16 7 C 0.59 16.36 5.45 86.69 0.47 16.83 16 8 O -0.57 -19.37 17.36 -4.01 -0.07 -19.43 16 9 N -0.60 -15.36 3.32 -815.11 -2.71 -18.07 16 10 C 0.11 2.47 6.47 86.73 0.56 3.03 16 11 C -0.12 -2.98 6.06 31.78 0.19 -2.79 16 12 C -0.10 -2.67 2.63 -9.32 -0.02 -2.69 16 13 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.19 6.50 2.43 44.99 0.11 6.61 16 15 H 0.05 1.87 7.99 -2.39 -0.02 1.85 16 16 C -0.16 -5.30 9.29 71.98 0.67 -4.63 16 17 N -0.75 -32.56 4.56 -322.92 -1.47 -34.03 16 18 C -0.22 -11.92 10.41 84.03 0.87 -11.04 16 19 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 20 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.99 -62.52 13.97 21.65 0.30 -62.22 16 22 Si 0.95 44.61 27.73 68.60 1.90 46.52 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 25 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 26 C 0.12 3.10 5.75 86.93 0.50 3.60 16 27 C 0.34 8.17 7.77 85.13 0.66 8.83 16 28 O -0.49 -11.55 13.01 -87.19 -1.13 -12.68 16 29 N -0.53 -11.71 10.28 -296.05 -3.04 -14.75 16 30 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.11 0.25 8.07 -2.39 -0.02 0.23 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.01 7.19 -2.39 -0.02 1.00 16 36 H 0.11 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 41 H 0.07 1.87 7.75 -2.39 -0.02 1.85 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.36 15.39 5.66 -92.71 -0.52 14.86 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.08 1.99 7.98 -2.39 -0.02 1.97 16 47 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 48 H 0.42 6.58 9.06 -74.05 -0.67 5.91 16 Total: -1.00 -76.76 395.16 -0.32 -77.08 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.28 Total: 28.52 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.18 Total: 9.06 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -6.92 Total: -129.07 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.20 Total: -32.11 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.52 kcal Total: -76.76 -0.32 -77.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501064056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.892 kcal (2) G-P(sol) polarization free energy of solvation -76.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds