Wall clock time and date at job start Tue Mar 31 2020 18:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40197 * 120.37183 * 2 1 4 4 C 1.35341 * 119.95249 * 179.97438 * 3 2 1 5 5 N 1.35768 * 120.70303 * 0.02562 * 4 3 2 6 6 C 1.46501 * 119.62418 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47055 * 90.00317 * 6 5 4 8 8 O 1.21275 * 119.99986 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99939 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64678 * 0.04145 * 9 7 6 11 11 C 1.54364 * 107.28852 * 178.87232 * 10 9 7 12 12 C 1.55158 * 102.92034 * 337.86335 * 11 10 9 13 13 H 1.09008 * 111.00330 * 277.35915 * 12 11 10 14 14 C 1.53002 * 111.00649 * 153.54833 * 12 11 10 15 15 H 1.09001 * 109.47095 * 306.81065 * 14 12 11 16 16 C 1.53000 * 109.47168 * 66.81071 * 14 12 11 17 17 N 1.46495 * 109.47114 * 186.81031 * 14 12 11 18 18 C 1.36945 * 120.00140 * 154.99973 * 17 14 12 19 19 H 1.07995 * 119.99236 * 359.97438 * 18 17 14 20 20 C 1.38803 * 120.00151 * 180.02562 * 18 17 14 21 21 N 1.31622 * 120.00051 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00214 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46855 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47243 * 119.99656 * 22 20 18 25 25 H 1.48497 * 109.47118 * 240.00113 * 22 20 18 26 26 C 1.47419 * 125.64927 * 180.02562 * 9 7 6 27 27 C 1.34654 * 120.74585 * 0.25650 * 5 4 3 28 28 O 1.22068 * 119.98472 * 179.70130 * 27 5 4 29 29 C 1.36405 * 120.36732 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47267 * 89.99518 * 1 2 3 31 31 H 1.08996 * 109.47209 * 210.00090 * 1 2 3 32 32 H 1.09000 * 109.46984 * 329.99943 * 1 2 3 33 33 H 1.08001 * 120.02525 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.64833 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.47194 * 330.00022 * 6 5 4 36 36 H 1.08999 * 109.46558 * 210.00406 * 6 5 4 37 37 H 1.09001 * 109.88186 * 298.32233 * 10 9 7 38 38 H 1.09004 * 109.88177 * 59.33111 * 10 9 7 39 39 H 1.08997 * 110.75682 * 219.49790 * 11 10 9 40 40 H 1.09005 * 110.70819 * 96.20549 * 11 10 9 41 41 H 1.09000 * 109.47195 * 54.73561 * 16 14 12 42 42 H 1.09000 * 109.47120 * 174.73778 * 16 14 12 43 43 H 1.09001 * 109.47196 * 294.73504 * 16 14 12 44 44 H 0.97000 * 120.00124 * 334.99669 * 17 14 12 45 45 H 0.97001 * 119.99873 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.36798 * 85.32614 * 26 9 7 47 47 H 1.09000 * 110.45934 * 323.04518 * 26 9 7 48 48 H 1.07997 * 120.34637 * 0.03792 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0273 0.0005 6 6 5.7187 0.0441 0.0005 7 6 6.2210 0.0498 1.4214 8 8 5.4330 0.0402 2.3431 9 7 7.5460 0.0645 1.6676 10 6 8.6067 0.0771 0.6496 11 6 9.9576 0.1208 1.3951 12 6 9.5703 0.7001 2.7814 13 1 9.5088 1.7879 2.7469 14 6 10.5537 0.2434 3.8609 15 1 10.6366 -0.8433 3.8406 16 6 11.9265 0.8646 3.5960 17 7 10.0693 0.6716 5.1755 18 6 10.4492 -0.0102 6.3007 19 1 11.1056 -0.8639 6.2188 20 6 9.9898 0.3952 7.5462 21 7 9.1895 1.4354 7.6458 22 14 10.5075 -0.5353 9.0810 23 1 11.4032 -1.6571 8.7011 24 1 11.2270 0.3844 9.9984 25 1 9.3033 -1.0732 9.7634 26 6 8.1718 0.0711 3.0024 27 6 3.6016 -1.1508 -0.0052 28 8 4.2312 -2.1966 -0.0106 29 6 2.1965 -1.1769 0.0005 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6823 2.1486 0.0004 34 1 4.1103 2.1343 0.0009 35 1 6.0718 0.9382 -0.5133 36 1 6.0922 -0.8416 -0.5134 37 1 8.5475 -0.8256 0.0415 38 1 8.5022 0.9580 0.0162 39 1 10.6596 0.7798 0.8843 40 1 10.3734 -0.8815 1.4986 41 1 11.8273 1.9477 3.5234 42 1 12.6020 0.6157 4.4144 43 1 12.3283 0.4732 2.6614 44 1 9.4795 1.4382 5.2489 45 1 8.8688 1.7190 8.5162 46 1 8.2689 -0.9464 3.3809 47 1 7.5878 0.6783 3.6940 48 1 1.6682 -2.1188 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501074784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:43 Heat of formation + Delta-G solvation = -22.238258 kcal Electronic energy + Delta-G solvation = -28616.023847 eV Core-core repulsion = 24671.750363 eV Total energy + Delta-G solvation = -3944.273484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.65444 -39.86724 -37.83237 -37.15914 -35.43197 -35.21619 -32.56152 -31.03030 -30.42063 -29.66908 -28.72332 -28.26914 -26.86508 -23.96395 -23.90389 -23.40045 -21.80144 -21.50391 -19.69106 -19.51006 -17.73628 -17.66828 -17.56768 -16.95296 -16.20814 -16.07461 -15.66626 -15.13323 -14.77627 -14.43907 -14.29981 -14.23969 -13.87898 -13.66590 -13.62619 -13.16222 -13.09883 -12.82047 -12.70999 -12.52693 -12.30292 -12.21391 -12.01540 -11.93924 -11.83926 -11.71471 -11.35500 -10.90571 -10.79498 -10.61404 -10.57407 -10.33334 -10.21368 -10.08825 -9.90142 -9.66835 -9.62130 -8.91665 -8.59300 -8.13959 -6.96259 -5.75552 -3.04694 0.63389 1.71928 2.26341 2.52854 3.00385 3.44676 3.50255 3.52250 3.52543 4.25765 4.28071 4.35044 4.48773 4.58079 4.61922 4.74195 4.83304 4.88803 4.93360 5.00218 5.11240 5.23558 5.24641 5.31689 5.43109 5.53753 5.54869 5.61988 5.74032 5.84661 5.84902 5.86669 5.89612 6.02855 6.14531 6.16733 6.26617 6.30493 6.34176 6.36514 6.53696 6.60748 6.83133 6.88639 7.05564 7.49565 7.71560 7.90471 8.09305 8.42471 9.54012 10.10239 10.44493 11.47010 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.002577 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.974433 B =10860.747819 C =12038.622978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.230 4.230 4 C 0.146 3.854 5 N -0.482 5.482 6 C 0.076 3.924 7 C 0.512 3.488 8 O -0.524 6.524 9 N -0.615 5.615 10 C 0.096 3.904 11 C -0.124 4.124 12 C -0.101 4.101 13 H 0.081 0.919 14 C 0.184 3.816 15 H 0.049 0.951 16 C -0.164 4.164 17 N -0.725 5.725 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.121 3.879 27 C 0.522 3.478 28 O -0.552 6.552 29 C -0.248 4.248 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 2.446 -23.687 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.050 4.050 7 C 0.298 3.702 8 O -0.399 6.399 9 N -0.350 5.350 10 C -0.027 4.027 11 C -0.162 4.162 12 C -0.121 4.121 13 H 0.099 0.901 14 C 0.074 3.926 15 H 0.067 0.933 16 C -0.224 4.224 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.000 4.000 27 C 0.325 3.675 28 O -0.434 6.434 29 C -0.269 4.269 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.284 1.616 -23.066 25.306 hybrid contribution 0.196 -0.042 1.022 1.042 sum -10.088 1.574 -22.044 24.293 Atomic orbital electron populations 1.20923 0.90362 1.03659 1.02960 1.20204 0.96772 0.92668 0.89224 1.20513 0.92317 0.98939 1.13536 1.21888 0.93650 0.89472 0.93111 1.45050 1.07205 1.07345 1.59644 1.21771 0.79626 1.07018 0.96544 1.20219 0.81477 0.77542 0.90957 1.90792 1.54223 1.49166 1.45757 1.48552 1.04328 1.72620 1.09475 1.22149 0.87917 1.01293 0.91355 1.22679 0.95088 1.02526 0.95910 1.22687 0.94510 1.00295 0.94633 0.90090 1.20164 0.90446 0.96954 0.85069 0.93275 1.22439 0.99716 1.00542 0.99685 1.42423 1.57800 1.36195 1.00169 1.19239 1.23668 1.08805 0.85180 0.91158 1.24732 1.00145 0.98394 0.97602 1.69667 1.37555 1.27363 1.23352 0.86153 0.77662 0.78909 0.83680 1.20585 1.21932 1.21883 1.22290 0.92891 1.02042 0.82794 1.17093 0.89382 0.82414 0.78656 1.90958 1.69157 1.30262 1.53044 1.21909 0.92207 0.99579 1.13234 0.90166 0.90800 0.90723 0.83695 0.82177 0.86287 0.85404 0.91359 0.91481 0.89908 0.90202 0.93655 0.92552 0.94415 0.78304 0.93572 0.90895 0.89751 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.03 36.00 0.36 -0.37 16 2 C 0.01 0.14 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.87 9.71 -39.88 -0.39 -2.25 16 4 C 0.15 1.29 10.28 -16.84 -0.17 1.12 16 5 N -0.48 -5.77 2.07 -121.07 -0.25 -6.02 16 6 C 0.08 0.81 5.01 -5.19 -0.03 0.78 16 7 C 0.51 7.80 7.92 -10.98 -0.09 7.71 16 8 O -0.52 -10.60 16.69 5.56 0.09 -10.51 16 9 N -0.61 -8.67 3.33 -170.49 -0.57 -9.23 16 10 C 0.10 0.93 6.49 -3.04 -0.02 0.91 16 11 C -0.12 -1.32 5.71 -24.87 -0.14 -1.46 16 12 C -0.10 -1.51 2.62 -88.46 -0.23 -1.74 16 13 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 14 C 0.18 3.39 2.41 -67.93 -0.16 3.23 16 15 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 16 C -0.16 -2.72 9.27 37.16 0.34 -2.37 16 17 N -0.72 -17.52 4.80 -53.43 -0.26 -17.77 16 18 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 22 Si 0.90 22.64 29.55 -169.99 -5.02 17.61 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 C 0.12 2.08 6.07 -2.52 -0.02 2.07 16 27 C 0.52 7.74 7.40 -15.45 -0.11 7.63 16 28 O -0.55 -10.20 16.64 4.86 0.08 -10.12 16 29 C -0.25 -2.99 9.65 -39.38 -0.38 -3.37 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.07 0.37 8.10 -51.93 -0.42 -0.06 16 33 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.16 0.87 8.04 -52.49 -0.42 0.45 16 35 H 0.12 0.71 8.01 -51.93 -0.42 0.29 16 36 H 0.13 1.33 7.38 -51.93 -0.38 0.95 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16 44 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 47 H 0.08 1.72 8.04 -51.93 -0.42 1.30 16 48 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -37.74 397.81 -8.90 -46.64 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.80 Total: 6.64 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.90 Total: 4.30 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.35 Total: -60.55 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.62 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.74 -8.90 -46.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501074784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.402 kcal (2) G-P(sol) polarization free energy of solvation -37.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds