Wall clock time and date at job start Tue Mar 31 2020 18:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40197 * 120.37183 * 2 1 4 4 C 1.35341 * 119.95249 * 179.97438 * 3 2 1 5 5 N 1.35768 * 120.70303 * 0.02562 * 4 3 2 6 6 C 1.46501 * 119.62418 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47055 * 90.00317 * 6 5 4 8 8 O 1.21275 * 119.99986 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99939 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64678 * 0.04145 * 9 7 6 11 11 C 1.54364 * 107.28852 * 178.87232 * 10 9 7 12 12 C 1.55158 * 102.92034 * 337.86335 * 11 10 9 13 13 H 1.09008 * 111.00330 * 277.35915 * 12 11 10 14 14 C 1.53002 * 111.00649 * 153.54833 * 12 11 10 15 15 H 1.09001 * 109.47095 * 306.81065 * 14 12 11 16 16 C 1.53000 * 109.47168 * 66.81071 * 14 12 11 17 17 N 1.46495 * 109.47114 * 186.81031 * 14 12 11 18 18 C 1.36945 * 120.00140 * 154.99973 * 17 14 12 19 19 H 1.07995 * 119.99236 * 359.97438 * 18 17 14 20 20 C 1.38803 * 120.00151 * 180.02562 * 18 17 14 21 21 N 1.31622 * 120.00051 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00214 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46855 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47243 * 119.99656 * 22 20 18 25 25 H 1.48497 * 109.47118 * 240.00113 * 22 20 18 26 26 C 1.47419 * 125.64927 * 180.02562 * 9 7 6 27 27 C 1.34654 * 120.74585 * 0.25650 * 5 4 3 28 28 O 1.22068 * 119.98472 * 179.70130 * 27 5 4 29 29 C 1.36405 * 120.36732 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47267 * 89.99518 * 1 2 3 31 31 H 1.08996 * 109.47209 * 210.00090 * 1 2 3 32 32 H 1.09000 * 109.46984 * 329.99943 * 1 2 3 33 33 H 1.08001 * 120.02525 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.64833 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.47194 * 330.00022 * 6 5 4 36 36 H 1.08999 * 109.46558 * 210.00406 * 6 5 4 37 37 H 1.09001 * 109.88186 * 298.32233 * 10 9 7 38 38 H 1.09004 * 109.88177 * 59.33111 * 10 9 7 39 39 H 1.08997 * 110.75682 * 219.49790 * 11 10 9 40 40 H 1.09005 * 110.70819 * 96.20549 * 11 10 9 41 41 H 1.09000 * 109.47195 * 54.73561 * 16 14 12 42 42 H 1.09000 * 109.47120 * 174.73778 * 16 14 12 43 43 H 1.09001 * 109.47196 * 294.73504 * 16 14 12 44 44 H 0.97000 * 120.00124 * 334.99669 * 17 14 12 45 45 H 0.97001 * 119.99873 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.36798 * 85.32614 * 26 9 7 47 47 H 1.09000 * 110.45934 * 323.04518 * 26 9 7 48 48 H 1.07997 * 120.34637 * 0.03792 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0273 0.0005 6 6 5.7187 0.0441 0.0005 7 6 6.2210 0.0498 1.4214 8 8 5.4330 0.0402 2.3431 9 7 7.5460 0.0645 1.6676 10 6 8.6067 0.0771 0.6496 11 6 9.9576 0.1208 1.3951 12 6 9.5703 0.7001 2.7814 13 1 9.5088 1.7879 2.7469 14 6 10.5537 0.2434 3.8609 15 1 10.6366 -0.8433 3.8406 16 6 11.9265 0.8646 3.5960 17 7 10.0693 0.6716 5.1755 18 6 10.4492 -0.0102 6.3007 19 1 11.1056 -0.8639 6.2188 20 6 9.9898 0.3952 7.5462 21 7 9.1895 1.4354 7.6458 22 14 10.5075 -0.5353 9.0810 23 1 11.4032 -1.6571 8.7011 24 1 11.2270 0.3844 9.9984 25 1 9.3033 -1.0732 9.7634 26 6 8.1718 0.0711 3.0024 27 6 3.6016 -1.1508 -0.0052 28 8 4.2312 -2.1966 -0.0106 29 6 2.1965 -1.1769 0.0005 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6823 2.1486 0.0004 34 1 4.1103 2.1343 0.0009 35 1 6.0718 0.9382 -0.5133 36 1 6.0922 -0.8416 -0.5134 37 1 8.5475 -0.8256 0.0415 38 1 8.5022 0.9580 0.0162 39 1 10.6596 0.7798 0.8843 40 1 10.3734 -0.8815 1.4986 41 1 11.8273 1.9477 3.5234 42 1 12.6020 0.6157 4.4144 43 1 12.3283 0.4732 2.6614 44 1 9.4795 1.4382 5.2489 45 1 8.8688 1.7190 8.5162 46 1 8.2689 -0.9464 3.3809 47 1 7.5878 0.6783 3.6940 48 1 1.6682 -2.1188 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501074784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:41 Heat of formation + Delta-G solvation = -48.485101 kcal Electronic energy + Delta-G solvation = -28617.161996 eV Core-core repulsion = 24671.750363 eV Total energy + Delta-G solvation = -3945.411633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.56423 -41.00916 -39.10661 -38.13138 -36.83542 -36.25118 -34.34225 -32.32098 -31.38604 -30.58068 -30.03159 -29.62080 -27.74217 -25.91175 -24.68639 -24.52000 -22.89117 -22.57140 -21.10402 -20.58936 -19.23310 -18.59846 -18.56687 -18.35313 -17.32236 -17.06157 -16.75241 -16.61702 -16.12610 -15.59210 -15.48580 -15.21308 -15.13384 -15.01889 -14.56309 -14.31516 -14.19132 -13.94239 -13.64881 -13.60896 -13.42441 -13.32791 -13.13387 -13.02169 -12.90945 -12.87595 -12.71806 -12.48645 -12.37054 -12.17477 -12.05748 -11.71253 -11.55000 -11.40689 -11.31026 -11.12883 -10.96939 -10.60963 -9.76415 -9.01785 -8.99993 -7.94970 -5.21997 -0.14937 0.88934 1.36708 1.41567 1.43278 1.44963 1.53847 1.97668 2.54222 2.63928 3.29282 3.39670 3.58468 3.62851 3.69621 3.72446 3.82840 3.88465 4.03124 4.11068 4.17255 4.30104 4.32896 4.37705 4.44084 4.53050 4.63421 4.71531 4.76539 4.82248 4.85750 4.87417 4.88541 4.99197 5.06167 5.10803 5.11175 5.21570 5.23463 5.32828 5.41726 5.46712 5.52073 5.63849 5.66012 6.02304 6.28049 6.39785 6.90213 6.96965 7.33716 8.11971 8.32369 9.28845 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.002577 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.974433 B =10860.747819 C =12038.622978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.230 4.230 4 C 0.138 3.862 5 N -0.485 5.485 6 C 0.084 3.916 7 C 0.503 3.497 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.090 3.910 11 C -0.113 4.113 12 C -0.090 4.090 13 H 0.084 0.916 14 C 0.176 3.824 15 H 0.041 0.959 16 C -0.151 4.151 17 N -0.738 5.738 18 C -0.230 4.230 19 H 0.075 0.925 20 C -0.080 4.080 21 N -0.970 5.970 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.300 1.300 26 C 0.125 3.875 27 C 0.501 3.499 28 O -0.612 6.612 29 C -0.293 4.293 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.179 0.821 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.030 0.970 43 H 0.081 0.919 44 H 0.370 0.630 45 H 0.248 0.752 46 H 0.041 0.959 47 H 0.038 0.962 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 4.235 -27.044 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.252 4.252 4 C 0.012 3.988 5 N -0.194 5.194 6 C -0.041 4.041 7 C 0.291 3.709 8 O -0.469 6.469 9 N -0.346 5.346 10 C -0.031 4.031 11 C -0.151 4.151 12 C -0.109 4.109 13 H 0.103 0.897 14 C 0.068 3.932 15 H 0.059 0.941 16 C -0.211 4.211 17 N -0.378 5.378 18 C -0.362 4.362 19 H 0.093 0.907 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.228 1.228 26 C 0.002 3.998 27 C 0.307 3.693 28 O -0.501 6.501 29 C -0.314 4.314 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.201 0.799 34 H 0.219 0.781 35 H 0.196 0.804 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.099 0.901 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.527 3.415 -26.508 28.375 hybrid contribution -0.069 -0.548 2.002 2.077 sum -9.596 2.868 -24.506 26.474 Atomic orbital electron populations 1.21040 0.87873 1.04490 1.04481 1.20663 0.98610 0.92070 0.85758 1.21077 0.92417 0.99878 1.11834 1.22708 0.94513 0.89677 0.91885 1.45108 1.07965 1.07558 1.58786 1.21970 0.78991 1.09907 0.93186 1.21165 0.81209 0.76076 0.92421 1.90756 1.55916 1.52139 1.48120 1.48643 1.05148 1.71642 1.09138 1.22544 0.85524 1.04521 0.90467 1.22732 0.96493 1.03087 0.92773 1.22496 0.91862 1.00322 0.96267 0.89729 1.20458 0.92534 0.96633 0.83605 0.94138 1.22254 0.97365 1.00608 1.00881 1.42656 1.57745 1.35584 1.01817 1.19615 1.22039 1.08226 0.86294 0.90725 1.25502 1.01268 0.99806 1.00600 1.69821 1.39627 1.29359 1.23373 0.85169 0.77017 0.78050 0.80171 1.18950 1.21930 1.22774 1.21954 0.94253 0.99443 0.84155 1.17542 0.90387 0.82670 0.78703 1.90895 1.70275 1.32243 1.56641 1.21905 0.91523 1.00872 1.17138 0.88052 0.91040 0.88821 0.79905 0.78080 0.80356 0.85158 0.89199 0.87081 0.86232 0.90036 0.93442 0.95031 0.90054 0.79839 0.94299 0.94038 0.94330 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.03 71.23 0.71 -0.48 16 2 C 0.03 0.57 5.89 -19.82 -0.12 0.45 16 3 C -0.23 -3.05 9.71 22.08 0.21 -2.83 16 4 C 0.14 2.06 10.28 83.42 0.86 2.92 16 5 N -0.49 -11.16 2.07 -655.07 -1.36 -12.52 16 6 C 0.08 1.61 5.01 85.63 0.43 2.04 16 7 C 0.50 15.27 7.92 87.66 0.69 15.96 16 8 O -0.59 -25.11 16.69 -3.02 -0.05 -25.16 16 9 N -0.61 -16.77 3.33 -811.70 -2.70 -19.47 16 10 C 0.09 1.38 6.49 86.74 0.56 1.94 16 11 C -0.11 -1.94 5.71 31.80 0.18 -1.76 16 12 C -0.09 -2.57 2.62 -9.39 -0.02 -2.59 16 13 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 14 C 0.18 6.42 2.41 44.99 0.11 6.53 16 15 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 16 C -0.15 -4.70 9.27 71.98 0.67 -4.03 16 17 N -0.74 -36.77 4.80 -322.95 -1.55 -38.32 16 18 C -0.23 -12.86 9.93 84.03 0.83 -12.02 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 21 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 22 Si 0.97 47.76 29.55 68.60 2.03 49.79 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 26 C 0.13 4.49 6.07 86.86 0.53 5.02 16 27 C 0.50 15.57 7.40 84.82 0.63 16.20 16 28 O -0.61 -24.33 16.64 -5.54 -0.09 -24.42 16 29 C -0.29 -7.42 9.65 22.40 0.22 -7.20 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 32 H 0.09 0.60 8.10 -2.39 -0.02 0.58 16 33 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.20 1.22 8.04 -2.91 -0.02 1.19 16 35 H 0.18 1.17 8.01 -2.39 -0.02 1.16 16 36 H 0.13 2.51 7.38 -2.39 -0.02 2.49 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.43 8.01 -2.38 -0.02 1.41 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.82 7.69 -2.39 -0.02 1.81 16 44 H 0.37 20.16 7.80 -92.71 -0.72 19.44 16 45 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 47 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 48 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -93.12 397.81 3.75 -89.37 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.23 Total: 25.77 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.96 Total: 15.89 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -5.33 Total: -131.24 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.14 Total: -49.58 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -93.12 3.75 -89.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501074784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.885 kcal (2) G-P(sol) polarization free energy of solvation -93.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds