Wall clock time and date at job start Tue Mar 31 2020 18:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40201 * 120.36200 * 2 1 4 4 C 1.35348 * 119.94029 * 179.97438 * 3 2 1 5 5 N 1.35757 * 120.70570 * 0.02562 * 4 3 2 6 6 C 1.46505 * 119.62502 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47148 * 89.99768 * 6 5 4 8 8 O 1.21279 * 120.00243 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99972 * 179.97438 * 7 6 5 10 10 C 1.47023 * 125.64824 * 0.05243 * 9 7 6 11 11 C 1.54326 * 107.27030 * 181.02154 * 10 9 7 12 12 C 1.55156 * 102.94358 * 22.18755 * 11 10 9 13 13 H 1.08994 * 111.03398 * 82.58694 * 12 11 10 14 14 C 1.53004 * 111.00333 * 206.42894 * 12 11 10 15 15 H 1.08990 * 109.47106 * 51.52999 * 14 12 11 16 16 C 1.53001 * 109.46896 * 291.53201 * 14 12 11 17 17 N 1.46498 * 109.47090 * 171.53592 * 14 12 11 18 18 C 1.36931 * 120.00193 * 204.99857 * 17 14 12 19 19 H 1.08005 * 119.99933 * 359.97438 * 18 17 14 20 20 C 1.38814 * 120.00353 * 179.97438 * 18 17 14 21 21 N 1.31615 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99797 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47354 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46863 * 120.00350 * 22 20 18 25 25 H 1.48498 * 109.47164 * 239.99876 * 22 20 18 26 26 C 1.47430 * 125.64719 * 180.02562 * 9 7 6 27 27 C 1.34651 * 120.75220 * 0.25217 * 5 4 3 28 28 O 1.22061 * 119.98922 * 179.70019 * 27 5 4 29 29 C 1.36391 * 120.36890 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47557 * 89.99894 * 1 2 3 31 31 H 1.09000 * 109.46748 * 209.99830 * 1 2 3 32 32 H 1.09002 * 109.47256 * 329.99401 * 1 2 3 33 33 H 1.07995 * 120.03149 * 0.02562 * 3 2 1 34 34 H 1.08006 * 119.64019 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.46842 * 330.00241 * 6 5 4 36 36 H 1.09002 * 109.47375 * 210.00133 * 6 5 4 37 37 H 1.09002 * 109.87968 * 300.42961 * 10 9 7 38 38 H 1.08997 * 109.88487 * 61.44337 * 10 9 7 39 39 H 1.09002 * 110.71854 * 263.82371 * 11 10 9 40 40 H 1.08999 * 110.72169 * 140.55420 * 11 10 9 41 41 H 1.08994 * 109.47323 * 185.25430 * 16 14 12 42 42 H 1.09003 * 109.47338 * 65.25266 * 16 14 12 43 43 H 1.08999 * 109.47323 * 305.25504 * 16 14 12 44 44 H 0.97001 * 119.99872 * 24.99234 * 17 14 12 45 45 H 0.96998 * 119.99648 * 179.97438 * 21 20 18 46 46 H 1.08993 * 110.36221 * 37.07609 * 26 9 7 47 47 H 1.08996 * 110.45939 * 274.79418 * 26 9 7 48 48 H 1.08002 * 120.34780 * 0.04073 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1998 0.0005 5 7 4.2537 0.0275 0.0005 6 6 5.7187 0.0443 0.0005 7 6 6.2210 0.0501 1.4213 8 8 5.4330 0.0407 2.3432 9 7 7.5460 0.0649 1.6676 10 6 8.6066 0.0775 0.6496 11 6 9.9577 0.0659 1.3954 12 6 9.5846 -0.5236 2.7812 13 1 9.5485 -1.6124 2.7463 14 6 10.5570 -0.0442 3.8609 15 1 10.6363 1.0421 3.8220 16 6 11.9342 -0.6651 3.6188 17 7 10.0628 -0.4510 5.1786 18 6 10.4305 0.2520 6.2947 19 1 11.0853 1.1061 6.2036 20 6 9.9618 -0.1331 7.5433 21 7 9.1635 -1.1736 7.6543 22 14 10.4642 0.8255 9.0659 23 1 11.3599 1.9431 8.6740 24 1 9.2529 1.3718 9.7288 25 1 11.1784 -0.0760 10.0051 26 6 8.1718 0.0715 3.0025 27 6 3.6017 -1.1506 -0.0051 28 8 4.2312 -2.1964 -0.0105 29 6 2.1966 -1.1768 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6821 2.1487 0.0004 34 1 4.1102 2.1345 0.0009 35 1 6.0717 0.9384 -0.5133 36 1 6.0923 -0.8414 -0.5133 37 1 8.5245 -0.8069 0.0177 38 1 8.5247 0.9774 0.0400 39 1 10.3494 1.0778 1.4994 40 1 10.6751 -0.5757 0.8838 41 1 12.6018 -0.3992 4.4383 42 1 12.3426 -0.2890 2.6808 43 1 11.8395 -1.7496 3.5648 44 1 9.4749 -1.2182 5.2605 45 1 8.8363 -1.4429 8.5268 46 1 7.6015 -0.5511 3.6918 47 1 8.2449 1.0900 3.3839 48 1 1.6683 -2.1188 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501074785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:46 Heat of formation + Delta-G solvation = -21.957640 kcal Electronic energy + Delta-G solvation = -28634.814660 eV Core-core repulsion = 24690.553345 eV Total energy + Delta-G solvation = -3944.261316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65032 -39.86126 -37.82554 -37.15376 -35.42718 -35.20878 -32.55281 -31.02747 -30.41895 -29.66461 -28.71405 -28.26573 -26.86060 -23.95011 -23.90096 -23.40120 -21.79606 -21.49278 -19.67908 -19.50738 -17.74777 -17.66389 -17.54760 -16.93135 -16.25401 -16.03684 -15.66009 -15.10236 -14.78259 -14.44879 -14.28937 -14.23742 -13.87766 -13.65868 -13.62106 -13.13999 -13.11435 -12.81747 -12.70154 -12.53050 -12.28170 -12.19376 -12.02770 -11.92750 -11.83678 -11.71152 -11.34295 -10.90593 -10.78770 -10.61080 -10.56573 -10.32958 -10.21151 -10.07889 -9.89330 -9.66203 -9.61557 -8.91329 -8.58831 -8.13433 -6.95603 -5.74454 -3.03974 0.63799 1.72303 2.26743 2.53166 3.00941 3.44375 3.49250 3.52236 3.52871 4.25410 4.28298 4.35196 4.48788 4.58377 4.62518 4.74421 4.83917 4.87774 4.95163 5.00434 5.11559 5.23873 5.28787 5.32294 5.40069 5.54202 5.55480 5.63463 5.74105 5.85456 5.86409 5.87945 5.90153 6.02543 6.14472 6.17027 6.27121 6.31523 6.35969 6.37733 6.55208 6.62176 6.83748 6.89146 7.06724 7.50115 7.71275 7.91451 8.09824 8.43172 9.54533 10.11380 10.45574 11.47984 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002593 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.688460 B =10794.760321 C =12001.878898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.230 4.230 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.076 3.924 7 C 0.512 3.488 8 O -0.524 6.524 9 N -0.615 5.615 10 C 0.096 3.904 11 C -0.123 4.123 12 C -0.103 4.103 13 H 0.081 0.919 14 C 0.185 3.815 15 H 0.049 0.951 16 C -0.164 4.164 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.122 3.878 27 C 0.522 3.478 28 O -0.550 6.550 29 C -0.247 4.247 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.188 7.001 -23.677 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.018 3.982 5 N -0.193 5.193 6 C -0.050 4.050 7 C 0.298 3.702 8 O -0.399 6.399 9 N -0.350 5.350 10 C -0.027 4.027 11 C -0.162 4.162 12 C -0.123 4.123 13 H 0.099 0.901 14 C 0.075 3.925 15 H 0.067 0.933 16 C -0.224 4.224 17 N -0.366 5.366 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.000 4.000 27 C 0.324 3.676 28 O -0.433 6.433 29 C -0.268 4.268 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.208 6.432 -23.057 26.023 hybrid contribution 0.195 0.282 1.019 1.075 sum -10.013 6.714 -22.038 25.120 Atomic orbital electron populations 1.20923 0.90368 1.03652 1.02952 1.20199 0.96768 0.92666 0.89303 1.20509 0.92312 0.98921 1.13576 1.21875 0.93641 0.89461 0.93190 1.45049 1.07198 1.07342 1.59673 1.21771 0.79634 1.07009 0.96547 1.20221 0.81489 0.77543 0.90955 1.90793 1.54228 1.49153 1.45747 1.48562 1.04326 1.72618 1.09482 1.22145 0.87920 1.01275 0.91380 1.22666 0.95121 1.02406 0.95961 1.22693 0.94433 1.00541 0.94600 0.90055 1.20154 0.90442 0.96854 0.85070 0.93320 1.22444 0.99675 1.00666 0.99645 1.42437 1.57915 1.35818 1.00461 1.19228 1.23852 1.08437 0.85483 0.91178 1.24747 1.00158 0.98372 0.97606 1.69670 1.37354 1.27557 1.23197 0.86156 0.77594 0.79017 0.83642 1.20611 1.21907 1.21928 1.22274 0.92821 1.02070 0.82788 1.17095 0.89386 0.82421 0.78671 1.90963 1.69134 1.30247 1.52909 1.21915 0.92214 0.99594 1.13117 0.90177 0.90789 0.90747 0.83727 0.82224 0.86321 0.85385 0.91369 0.91478 0.90240 0.89922 0.92558 0.94439 0.93617 0.78244 0.93531 0.89804 0.90824 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.03 36.01 0.36 -0.37 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.86 9.71 -39.88 -0.39 -2.24 16 4 C 0.15 1.28 10.28 -16.85 -0.17 1.10 16 5 N -0.48 -5.78 2.07 -121.06 -0.25 -6.03 16 6 C 0.08 0.81 5.01 -5.19 -0.03 0.78 16 7 C 0.51 7.82 7.92 -10.99 -0.09 7.73 16 8 O -0.52 -10.62 16.69 5.56 0.09 -10.53 16 9 N -0.61 -8.69 3.33 -170.53 -0.57 -9.26 16 10 C 0.10 0.93 6.49 -3.06 -0.02 0.91 16 11 C -0.12 -1.32 5.79 -24.90 -0.14 -1.46 16 12 C -0.10 -1.58 2.62 -88.48 -0.23 -1.81 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 14 C 0.19 3.43 2.42 -67.93 -0.16 3.26 16 15 H 0.05 0.91 8.00 -51.93 -0.42 0.50 16 16 C -0.16 -2.76 9.29 37.16 0.35 -2.42 16 17 N -0.72 -17.67 4.76 -53.43 -0.25 -17.92 16 18 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 22 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 C 0.12 2.10 6.03 -2.54 -0.02 2.08 16 27 C 0.52 7.80 7.40 -15.45 -0.11 7.69 16 28 O -0.55 -10.29 16.63 4.86 0.08 -10.21 16 29 C -0.25 -3.00 9.65 -39.38 -0.38 -3.38 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 33 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.16 0.84 8.04 -52.48 -0.42 0.42 16 35 H 0.12 0.70 8.01 -51.93 -0.42 0.28 16 36 H 0.13 1.35 7.38 -51.93 -0.38 0.97 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.80 7.98 -51.93 -0.41 0.39 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.50 7.75 -51.93 -0.40 0.10 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 1.77 8.04 -51.93 -0.42 1.35 16 47 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 48 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -37.93 397.82 -8.90 -46.82 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.80 Total: 7.09 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.90 Total: 4.27 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.35 Total: -60.96 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.17 Total: -20.74 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.93 -8.90 -46.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501074785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.866 kcal (2) G-P(sol) polarization free energy of solvation -37.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds