Wall clock time and date at job start Tue Mar 31 2020 17:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38628 * 120.75199 * 2 1 4 4 C 1.38561 * 119.34868 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.54743 * 180.02562 * 4 3 2 6 6 N 1.31522 * 120.90561 * 359.74123 * 4 3 2 7 7 C 1.32714 * 121.63876 * 0.53515 * 6 4 3 8 8 C 1.48172 * 119.72176 * 179.74726 * 7 6 4 9 9 O 1.21514 * 120.00503 * 179.71765 * 8 7 6 10 10 N 1.34777 * 119.99707 * 359.97438 * 8 7 6 11 11 C 1.46508 * 119.99965 * 174.37004 * 10 8 7 12 12 C 1.52998 * 109.49544 * 302.60527 * 11 10 8 13 13 O 1.42903 * 109.47217 * 301.78851 * 12 11 10 14 14 C 1.53039 * 109.49755 * 62.67035 * 11 10 8 15 15 C 1.53047 * 109.53859 * 58.59022 * 14 11 10 16 16 C 1.53193 * 109.31139 * 61.36092 * 15 14 11 17 17 N 1.46927 * 108.77938 * 305.36676 * 16 15 14 18 18 C 1.36935 * 120.63322 * 233.63360 * 17 16 15 19 19 H 1.07993 * 120.00195 * 149.56698 * 18 17 16 20 20 C 1.38810 * 119.99720 * 329.57000 * 18 17 16 21 21 N 1.31616 * 120.00306 * 161.52547 * 20 18 17 22 22 Si 1.86802 * 120.00080 * 341.51927 * 20 18 17 23 23 H 1.48500 * 109.47066 * 92.78510 * 22 20 18 24 24 H 1.48498 * 109.47455 * 212.78511 * 22 20 18 25 25 H 1.48506 * 109.47227 * 332.78959 * 22 20 18 26 26 C 1.47003 * 118.75277 * 53.60728 * 17 16 15 27 27 C 1.38584 * 120.75828 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46759 * 270.01356 * 1 2 3 29 29 H 1.08992 * 109.47675 * 30.01667 * 1 2 3 30 30 H 1.09000 * 109.47126 * 150.02160 * 1 2 3 31 31 H 1.07996 * 120.32783 * 359.96260 * 3 2 1 32 32 H 1.09008 * 109.46954 * 89.99848 * 5 4 3 33 33 H 1.08994 * 109.47565 * 210.00215 * 5 4 3 34 34 H 1.09001 * 109.47052 * 330.00416 * 5 4 3 35 35 H 0.97001 * 120.00462 * 354.36029 * 10 8 7 36 36 H 1.09001 * 109.46986 * 61.78660 * 12 11 10 37 37 H 1.08997 * 109.47369 * 181.78340 * 12 11 10 38 38 H 0.96701 * 113.99788 * 179.97438 * 13 12 11 39 39 H 1.08994 * 109.45752 * 178.60501 * 14 11 10 40 40 H 1.09003 * 109.46211 * 298.56811 * 14 11 10 41 41 H 1.08994 * 109.49774 * 181.31388 * 15 14 11 42 42 H 1.09006 * 109.49081 * 301.38106 * 15 14 11 43 43 H 1.09003 * 109.58657 * 65.15518 * 16 15 14 44 44 H 1.09003 * 109.58323 * 185.43406 * 16 15 14 45 45 H 0.96996 * 120.00519 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.62439 * 186.61955 * 26 17 16 47 47 H 1.08989 * 109.58030 * 66.17228 * 26 17 16 48 48 H 1.08000 * 120.47143 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1914 0.0000 4 6 3.6010 1.1574 0.0005 5 6 4.3761 2.4499 0.0011 6 7 4.2487 0.0127 0.0061 7 6 3.6082 -1.1496 0.0009 8 6 4.3807 -2.4140 0.0019 9 8 3.7995 -3.4812 0.0024 10 7 5.7280 -2.3805 0.0076 11 6 6.4912 -3.6249 0.1331 12 6 6.0858 -4.3449 1.4207 13 8 6.3202 -3.4877 2.5398 14 6 6.2003 -4.5259 -1.0693 15 6 6.5743 -3.7936 -2.3601 16 6 8.0726 -3.4748 -2.3459 17 7 8.3865 -2.7317 -1.1178 18 6 9.0370 -1.5282 -1.1776 19 1 8.8503 -0.7756 -0.4259 20 6 9.9363 -1.2757 -2.2043 21 7 10.2835 -0.0376 -2.4854 22 14 10.6540 -2.6929 -3.1871 23 1 9.8191 -2.9328 -4.3916 24 1 12.0387 -2.3553 -3.6039 25 1 10.6744 -3.9175 -2.3472 26 6 7.9885 -3.3042 0.1763 27 6 2.2157 -1.1909 0.0005 28 1 -0.3633 0.0002 1.0277 29 1 -0.3634 0.8897 -0.5140 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6936 2.1366 -0.0006 32 1 4.5625 2.7612 1.0290 33 1 5.3264 2.3040 -0.5123 34 1 3.7999 3.2193 -0.5127 35 1 6.1925 -1.5327 -0.0715 36 1 5.0275 -4.6020 1.3755 37 1 6.6763 -5.2545 1.5298 38 1 6.0848 -3.8799 3.3918 39 1 6.7872 -5.4407 -0.9878 40 1 5.1394 -4.7757 -1.0878 41 1 6.3451 -4.4268 -3.2171 42 1 6.0052 -2.8665 -2.4302 43 1 8.6438 -4.4030 -2.3674 44 1 8.3257 -2.8698 -3.2165 45 1 10.9117 0.1389 -3.2031 46 1 8.1854 -2.5846 0.9710 47 1 8.5528 -4.2183 0.3604 48 1 1.6959 -2.1376 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501333318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:39 Heat of formation + Delta-G solvation = -27.979034 kcal Electronic energy + Delta-G solvation = -30357.388533 eV Core-core repulsion = 26412.866110 eV Total energy + Delta-G solvation = -3944.522423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72980 -39.67710 -37.49913 -36.15943 -34.40592 -33.83026 -32.88817 -32.11127 -30.80978 -30.07157 -28.09916 -27.52015 -25.73926 -25.14936 -24.52813 -22.03072 -21.40348 -21.26049 -20.29673 -18.75953 -17.56219 -17.01350 -16.72079 -16.48753 -16.01052 -15.29845 -15.26940 -15.10641 -14.70642 -14.33247 -13.83466 -13.78829 -13.62592 -13.47153 -13.39541 -13.21478 -12.92485 -12.85336 -12.73303 -12.31949 -12.20805 -12.14249 -12.02503 -11.77538 -11.69216 -11.47141 -11.33762 -10.75375 -10.63691 -10.22241 -10.01102 -9.96436 -9.70884 -9.59343 -9.56044 -9.46986 -9.19003 -8.97307 -8.56811 -8.47581 -6.92129 -5.92035 -3.31735 0.72592 1.17994 2.95352 3.35089 3.44750 3.50323 3.53577 3.95579 4.17830 4.43610 4.47196 4.55866 4.67926 4.91805 4.95262 5.01289 5.17654 5.27810 5.28843 5.32791 5.43388 5.49682 5.54104 5.54781 5.61489 5.64386 5.65363 5.67586 5.77764 5.86087 5.96728 6.09585 6.14942 6.16789 6.23096 6.27649 6.34150 6.46290 6.61994 6.62222 6.69400 6.78299 6.92641 7.05697 7.80307 7.84526 8.00629 8.14864 8.36066 8.60453 8.95982 9.74021 10.11708 11.23633 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004351 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.630770 B = 6434.048505 C = 7613.208538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.159 4.159 4 C 0.134 3.866 5 C -0.107 4.107 6 N -0.453 5.453 7 C 0.096 3.904 8 C 0.571 3.429 9 O -0.551 6.551 10 N -0.665 5.665 11 C 0.163 3.837 12 C 0.065 3.935 13 O -0.563 6.563 14 C -0.122 4.122 15 C -0.129 4.129 16 C 0.125 3.875 17 N -0.604 5.604 18 C -0.260 4.260 19 H 0.086 0.914 20 C 0.028 3.972 21 N -0.908 5.908 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.151 3.849 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.421 0.579 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.371 0.629 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.262 0.738 46 H 0.078 0.922 47 H 0.037 0.963 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.687 -1.601 6.873 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.179 4.179 4 C -0.006 4.006 5 C -0.164 4.164 6 N -0.165 5.165 7 C -0.042 4.042 8 C 0.356 3.644 9 O -0.431 6.431 10 N -0.314 5.314 11 C 0.074 3.926 12 C -0.014 4.014 13 O -0.367 6.367 14 C -0.160 4.160 15 C -0.169 4.169 16 C -0.001 4.001 17 N -0.327 5.327 18 C -0.388 4.388 19 H 0.104 0.896 20 C -0.171 4.171 21 N -0.550 5.550 22 Si 0.715 3.285 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.195 1.195 26 C 0.024 3.976 27 C -0.148 4.148 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.216 0.784 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.055 0.945 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.783 -1.842 6.320 18.028 hybrid contribution -0.402 -0.749 -0.318 0.908 sum -17.185 -2.591 6.001 18.387 Atomic orbital electron populations 1.20804 0.89927 1.03399 1.02886 1.20288 0.96876 0.92628 0.96089 1.22033 0.94855 0.98709 1.02343 1.21351 0.91023 0.93983 0.94249 1.20767 1.00975 0.91341 1.03325 1.67501 1.40885 0.97528 1.10615 1.21276 0.91550 0.92399 0.99021 1.17821 0.82690 0.87032 0.76895 1.90651 1.70463 1.29738 1.52234 1.45705 1.04775 1.11267 1.69702 1.21013 0.94592 0.84423 0.92526 1.22615 1.00575 0.92151 0.86046 1.86547 1.89087 1.44465 1.16583 1.21785 1.02430 0.97565 0.94228 1.21928 0.99012 1.00021 0.95912 1.21372 0.92660 0.95330 0.90715 1.44369 1.66815 1.22318 0.99206 1.18888 1.17558 0.89422 1.12906 0.89631 1.25312 0.97479 0.95911 0.98431 1.69812 1.35915 1.18008 1.31293 0.86919 0.77791 0.83973 0.79839 1.21714 1.23279 1.19538 1.21135 0.88703 0.98133 0.89580 1.21937 0.93907 0.99268 0.99648 0.90510 0.90965 0.90875 0.84608 0.90248 0.89468 0.90764 0.74098 0.91773 0.93317 0.78387 0.91812 0.90410 0.92750 0.91862 0.95734 0.91069 0.92839 0.90385 0.94493 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.06 36.01 0.36 -0.48 16 2 C -0.05 -0.57 5.91 -104.35 -0.62 -1.18 16 3 C -0.16 -1.76 9.45 -39.32 -0.37 -2.13 16 4 C 0.13 1.82 6.78 -82.60 -0.56 1.26 16 5 C -0.11 -1.19 10.17 36.01 0.37 -0.83 16 6 N -0.45 -7.55 9.46 -6.06 -0.06 -7.60 16 7 C 0.10 1.59 6.75 -83.01 -0.56 1.03 16 8 C 0.57 10.30 7.22 -12.18 -0.09 10.21 16 9 O -0.55 -10.25 12.60 5.35 0.07 -10.18 16 10 N -0.67 -12.43 4.00 -48.32 -0.19 -12.62 16 11 C 0.16 2.90 0.45 -131.70 -0.06 2.84 16 12 C 0.07 1.00 5.66 37.16 0.21 1.21 16 13 O -0.56 -8.46 13.00 -35.23 -0.46 -8.92 16 14 C -0.12 -2.11 4.51 -26.69 -0.12 -2.23 16 15 C -0.13 -2.47 5.93 -26.61 -0.16 -2.62 16 16 C 0.12 2.76 4.19 -3.71 -0.02 2.74 16 17 N -0.60 -14.20 2.60 -172.26 -0.45 -14.65 16 18 C -0.26 -7.14 10.02 -15.06 -0.15 -7.29 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.03 0.80 5.25 -17.43 -0.09 0.71 16 21 N -0.91 -27.62 13.97 55.49 0.78 -26.84 16 22 Si 0.88 22.51 24.36 -169.99 -4.14 18.37 16 23 H -0.29 -7.18 6.67 56.52 0.38 -6.80 16 24 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.27 -6.75 6.59 56.52 0.37 -6.38 16 26 C 0.15 3.05 5.03 -3.67 -0.02 3.03 16 27 C -0.13 -1.74 9.34 -39.06 -0.36 -2.10 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.42 8.67 7.77 -40.82 -0.32 8.36 16 36 H 0.06 1.02 6.22 -51.93 -0.32 0.70 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.37 3.73 9.12 45.56 0.42 4.15 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.36 6.23 -51.93 -0.32 1.04 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.30 7.53 -51.93 -0.39 0.91 16 43 H 0.02 0.54 6.99 -51.93 -0.36 0.17 16 44 H 0.07 1.73 4.76 -51.93 -0.25 1.48 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.08 1.66 7.70 -51.93 -0.40 1.26 16 47 H 0.04 0.72 8.14 -51.94 -0.42 0.30 16 48 H 0.14 1.85 7.64 -52.49 -0.40 1.45 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -33.08 376.74 -7.62 -40.70 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.60 Total: 11.91 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.24 Total: 4.16 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.08 Total: -61.72 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.39 Total: -19.10 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.08 -7.62 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501333318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.722 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds