Wall clock time and date at job start Tue Mar 31 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38628 * 120.75199 * 2 1 4 4 C 1.38561 * 119.34868 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.54743 * 180.02562 * 4 3 2 6 6 N 1.31522 * 120.90561 * 359.74123 * 4 3 2 7 7 C 1.32714 * 121.63876 * 0.53515 * 6 4 3 8 8 C 1.48172 * 119.72176 * 179.74726 * 7 6 4 9 9 O 1.21514 * 120.00503 * 179.71765 * 8 7 6 10 10 N 1.34777 * 119.99707 * 359.97438 * 8 7 6 11 11 C 1.46508 * 119.99965 * 174.37004 * 10 8 7 12 12 C 1.52998 * 109.49544 * 302.60527 * 11 10 8 13 13 O 1.42903 * 109.47217 * 301.78851 * 12 11 10 14 14 C 1.53039 * 109.49755 * 62.67035 * 11 10 8 15 15 C 1.53047 * 109.53859 * 58.59022 * 14 11 10 16 16 C 1.53193 * 109.31139 * 61.36092 * 15 14 11 17 17 N 1.46927 * 108.77938 * 305.36676 * 16 15 14 18 18 C 1.36935 * 120.63322 * 233.63360 * 17 16 15 19 19 H 1.07993 * 120.00195 * 149.56698 * 18 17 16 20 20 C 1.38810 * 119.99720 * 329.57000 * 18 17 16 21 21 N 1.31616 * 120.00306 * 161.52547 * 20 18 17 22 22 Si 1.86802 * 120.00080 * 341.51927 * 20 18 17 23 23 H 1.48500 * 109.47066 * 92.78510 * 22 20 18 24 24 H 1.48498 * 109.47455 * 212.78511 * 22 20 18 25 25 H 1.48506 * 109.47227 * 332.78959 * 22 20 18 26 26 C 1.47003 * 118.75277 * 53.60728 * 17 16 15 27 27 C 1.38584 * 120.75828 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46759 * 270.01356 * 1 2 3 29 29 H 1.08992 * 109.47675 * 30.01667 * 1 2 3 30 30 H 1.09000 * 109.47126 * 150.02160 * 1 2 3 31 31 H 1.07996 * 120.32783 * 359.96260 * 3 2 1 32 32 H 1.09008 * 109.46954 * 89.99848 * 5 4 3 33 33 H 1.08994 * 109.47565 * 210.00215 * 5 4 3 34 34 H 1.09001 * 109.47052 * 330.00416 * 5 4 3 35 35 H 0.97001 * 120.00462 * 354.36029 * 10 8 7 36 36 H 1.09001 * 109.46986 * 61.78660 * 12 11 10 37 37 H 1.08997 * 109.47369 * 181.78340 * 12 11 10 38 38 H 0.96701 * 113.99788 * 179.97438 * 13 12 11 39 39 H 1.08994 * 109.45752 * 178.60501 * 14 11 10 40 40 H 1.09003 * 109.46211 * 298.56811 * 14 11 10 41 41 H 1.08994 * 109.49774 * 181.31388 * 15 14 11 42 42 H 1.09006 * 109.49081 * 301.38106 * 15 14 11 43 43 H 1.09003 * 109.58657 * 65.15518 * 16 15 14 44 44 H 1.09003 * 109.58323 * 185.43406 * 16 15 14 45 45 H 0.96996 * 120.00519 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.62439 * 186.61955 * 26 17 16 47 47 H 1.08989 * 109.58030 * 66.17228 * 26 17 16 48 48 H 1.08000 * 120.47143 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1914 0.0000 4 6 3.6010 1.1574 0.0005 5 6 4.3761 2.4499 0.0011 6 7 4.2487 0.0127 0.0061 7 6 3.6082 -1.1496 0.0009 8 6 4.3807 -2.4140 0.0019 9 8 3.7995 -3.4812 0.0024 10 7 5.7280 -2.3805 0.0076 11 6 6.4912 -3.6249 0.1331 12 6 6.0858 -4.3449 1.4207 13 8 6.3202 -3.4877 2.5398 14 6 6.2003 -4.5259 -1.0693 15 6 6.5743 -3.7936 -2.3601 16 6 8.0726 -3.4748 -2.3459 17 7 8.3865 -2.7317 -1.1178 18 6 9.0370 -1.5282 -1.1776 19 1 8.8503 -0.7756 -0.4259 20 6 9.9363 -1.2757 -2.2043 21 7 10.2835 -0.0376 -2.4854 22 14 10.6540 -2.6929 -3.1871 23 1 9.8191 -2.9328 -4.3916 24 1 12.0387 -2.3553 -3.6039 25 1 10.6744 -3.9175 -2.3472 26 6 7.9885 -3.3042 0.1763 27 6 2.2157 -1.1909 0.0005 28 1 -0.3633 0.0002 1.0277 29 1 -0.3634 0.8897 -0.5140 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6936 2.1366 -0.0006 32 1 4.5625 2.7612 1.0290 33 1 5.3264 2.3040 -0.5123 34 1 3.7999 3.2193 -0.5127 35 1 6.1925 -1.5327 -0.0715 36 1 5.0275 -4.6020 1.3755 37 1 6.6763 -5.2545 1.5298 38 1 6.0848 -3.8799 3.3918 39 1 6.7872 -5.4407 -0.9878 40 1 5.1394 -4.7757 -1.0878 41 1 6.3451 -4.4268 -3.2171 42 1 6.0052 -2.8665 -2.4302 43 1 8.6438 -4.4030 -2.3674 44 1 8.3257 -2.8698 -3.2165 45 1 10.9117 0.1389 -3.2031 46 1 8.1854 -2.5846 0.9710 47 1 8.5528 -4.2183 0.3604 48 1 1.6959 -2.1376 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501333318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:38 Heat of formation + Delta-G solvation = -53.148545 kcal Electronic energy + Delta-G solvation = -30358.479965 eV Core-core repulsion = 26412.866110 eV Total energy + Delta-G solvation = -3945.613855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92943 -40.93442 -38.98346 -37.49640 -35.62349 -35.16887 -34.19314 -33.63829 -32.67482 -31.52545 -29.00612 -28.34106 -27.44770 -26.80199 -25.67009 -23.80939 -22.92677 -22.24275 -21.68647 -20.16756 -18.84760 -18.71800 -18.22040 -17.60728 -17.23882 -16.98082 -16.59884 -16.42934 -15.94312 -15.59131 -15.53479 -15.22622 -15.07489 -14.81393 -14.53968 -14.42977 -14.13183 -14.03508 -13.80170 -13.73252 -13.40651 -13.33170 -13.29010 -13.10407 -13.04105 -12.94527 -12.57437 -12.52122 -12.21354 -12.01620 -11.69213 -11.48532 -11.43500 -11.24281 -10.82884 -10.66450 -10.50165 -10.37056 -10.06547 -9.82744 -8.89462 -8.14125 -5.50298 -0.34203 0.21016 1.31494 1.41688 1.51118 1.73468 2.15469 2.43421 2.82835 3.05430 3.09712 3.23314 3.33726 3.62910 3.67676 3.91867 3.95403 4.03068 4.04416 4.14235 4.20116 4.33446 4.41531 4.50729 4.54214 4.60910 4.61607 4.73617 4.73821 4.74164 4.76550 4.79944 4.81531 4.95178 4.96245 4.98572 5.07113 5.14155 5.23136 5.25196 5.28214 5.34342 5.62291 5.69695 5.89374 6.14901 6.54243 6.86717 6.90307 6.93143 7.21071 7.61120 8.02228 9.05398 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004351 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.630770 B = 6434.048505 C = 7613.208538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.046 4.046 3 C -0.145 4.145 4 C 0.113 3.887 5 C -0.104 4.104 6 N -0.493 5.493 7 C 0.062 3.938 8 C 0.569 3.431 9 O -0.562 6.562 10 N -0.673 5.673 11 C 0.159 3.841 12 C 0.074 3.926 13 O -0.582 6.582 14 C -0.115 4.115 15 C -0.121 4.121 16 C 0.122 3.878 17 N -0.613 5.613 18 C -0.244 4.244 19 H 0.049 0.951 20 C -0.029 4.029 21 N -0.955 5.955 22 Si 0.947 3.053 23 H -0.279 1.279 24 H -0.312 1.312 25 H -0.257 1.257 26 C 0.154 3.846 27 C -0.131 4.131 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.177 0.823 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.407 0.593 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.392 0.608 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 -2.996 7.093 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 C -0.165 4.165 4 C -0.027 4.027 5 C -0.161 4.161 6 N -0.206 5.206 7 C -0.076 4.076 8 C 0.355 3.645 9 O -0.443 6.443 10 N -0.321 5.321 11 C 0.071 3.929 12 C -0.005 4.005 13 O -0.389 6.389 14 C -0.153 4.153 15 C -0.160 4.160 16 C -0.003 4.003 17 N -0.338 5.338 18 C -0.373 4.373 19 H 0.067 0.933 20 C -0.224 4.224 21 N -0.601 5.601 22 Si 0.776 3.224 23 H -0.206 1.206 24 H -0.242 1.242 25 H -0.181 1.181 26 C 0.029 3.971 27 C -0.152 4.152 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.194 0.806 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.241 0.759 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.326 -3.301 6.575 20.679 hybrid contribution 0.259 -0.197 -0.289 0.435 sum -19.067 -3.498 6.286 20.379 Atomic orbital electron populations 1.20906 0.86695 1.04793 1.04270 1.20759 0.98973 0.91531 0.94109 1.22447 0.93715 1.00487 0.99812 1.21850 0.92727 0.93653 0.94477 1.20818 0.99844 0.91380 1.04022 1.67412 1.42453 0.98561 1.12216 1.21196 0.92604 0.91849 1.01903 1.18106 0.82404 0.87785 0.76231 1.90613 1.70486 1.30243 1.52913 1.45769 1.05238 1.10824 1.70239 1.21084 0.92698 0.84542 0.94531 1.22486 1.00662 0.92382 0.84934 1.86505 1.89243 1.45365 1.17830 1.21750 1.02873 0.97916 0.92758 1.21819 0.96284 0.99751 0.98187 1.21421 0.94919 0.94996 0.88971 1.44400 1.66698 1.21483 1.01176 1.18746 1.16970 0.90257 1.11357 0.93331 1.25917 0.98327 0.97998 1.00175 1.69950 1.37325 1.20111 1.32727 0.85889 0.76331 0.81215 0.78920 1.20561 1.24153 1.18078 1.21185 0.90692 0.97947 0.87295 1.22097 0.92872 1.00723 0.99496 0.88916 0.88787 0.90332 0.80554 0.89221 0.92517 0.87486 0.75756 0.92171 0.90665 0.75868 0.89406 0.90244 0.90102 0.94256 0.94153 0.93478 0.93072 0.92369 0.92615 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.06 71.24 0.72 -0.50 16 2 C -0.05 -0.92 5.91 -19.69 -0.12 -1.03 16 3 C -0.15 -2.85 9.45 22.44 0.21 -2.64 16 4 C 0.11 3.05 6.78 42.68 0.29 3.34 16 5 C -0.10 -2.30 10.17 71.24 0.72 -1.58 16 6 N -0.49 -17.17 9.46 -173.08 -1.64 -18.81 16 7 C 0.06 2.10 6.75 41.91 0.28 2.38 16 8 C 0.57 21.02 7.22 86.88 0.63 21.64 16 9 O -0.56 -20.86 12.60 -3.76 -0.05 -20.91 16 10 N -0.67 -25.96 4.00 -425.08 -1.70 -27.66 16 11 C 0.16 5.57 0.45 3.68 0.00 5.57 16 12 C 0.07 2.16 5.66 71.98 0.41 2.57 16 13 O -0.58 -17.05 13.00 -148.98 -1.94 -18.99 16 14 C -0.11 -3.76 4.51 30.62 0.14 -3.62 16 15 C -0.12 -4.48 5.93 30.67 0.18 -4.30 16 16 C 0.12 5.26 4.19 86.36 0.36 5.62 16 17 N -0.61 -29.12 2.60 -698.92 -1.82 -30.93 16 18 C -0.24 -13.95 10.02 84.03 0.84 -13.11 16 19 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 20 C -0.03 -1.72 5.25 84.86 0.45 -1.28 16 21 N -0.96 -60.60 13.97 21.65 0.30 -60.30 16 22 Si 0.95 47.10 24.36 68.60 1.67 48.77 16 23 H -0.28 -13.26 6.67 99.48 0.66 -12.59 16 24 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 25 H -0.26 -12.04 6.59 99.48 0.66 -11.39 16 26 C 0.15 6.20 5.03 86.35 0.43 6.64 16 27 C -0.13 -3.51 9.34 22.61 0.21 -3.30 16 28 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 1.61 8.08 -2.39 -0.02 1.59 16 35 H 0.41 17.92 7.77 -92.71 -0.72 17.20 16 36 H 0.06 1.82 6.22 -2.39 -0.01 1.81 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.39 7.36 9.12 -74.06 -0.68 6.69 16 39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.08 2.64 6.23 -2.39 -0.01 2.62 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.04 1.63 7.53 -2.38 -0.02 1.61 16 43 H 0.04 1.64 6.99 -2.39 -0.02 1.62 16 44 H 0.05 2.26 4.76 -2.39 -0.01 2.25 16 45 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 46 H 0.06 2.55 7.70 -2.39 -0.02 2.53 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.15 3.72 7.64 -2.91 -0.02 3.69 16 Total: -1.00 -75.71 376.74 0.10 -75.61 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.50 Total: 36.81 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 5.76 Total: 16.41 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -4.85 Total: -137.70 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.98 Total: -39.90 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.77 kcal Total: -75.71 0.10 -75.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501333318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.459 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds