Wall clock time and date at job start Tue Mar 31 2020 17:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38602 * 120.32450 * 2 1 4 4 N 1.31503 * 120.90051 * 180.30877 * 3 2 1 5 5 C 1.32746 * 121.64004 * 359.72352 * 4 3 2 6 6 C 1.48166 * 119.71704 * 180.02562 * 5 4 3 7 7 O 1.21519 * 119.99776 * 158.59786 * 6 5 4 8 8 N 1.34771 * 120.00200 * 338.59098 * 6 5 4 9 9 C 1.46923 * 120.63417 * 0.02562 * 8 6 5 10 10 C 1.52757 * 109.00836 * 233.58368 * 9 8 6 11 11 C 1.53036 * 109.38029 * 305.58000 * 10 9 8 12 12 C 1.53042 * 109.53648 * 61.24748 * 11 10 9 13 13 C 1.53003 * 109.49700 * 178.68341 * 12 11 10 14 14 O 1.42900 * 109.46999 * 184.83601 * 13 12 11 15 15 N 1.46498 * 109.52726 * 58.59655 * 12 11 10 16 16 C 1.36933 * 120.00137 * 180.14695 * 15 12 11 17 17 H 1.08002 * 119.99972 * 0.02562 * 16 15 12 18 18 C 1.38812 * 120.00295 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99518 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00302 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47062 * 89.99576 * 20 18 16 22 22 H 1.48504 * 109.47170 * 209.99463 * 20 18 16 23 23 H 1.48504 * 109.46909 * 329.99718 * 20 18 16 24 24 C 1.46935 * 120.62892 * 180.27863 * 8 6 5 25 25 C 1.39267 * 120.55399 * 0.02562 * 5 4 3 26 26 C 1.38581 * 120.32384 * 179.77698 * 2 1 3 27 27 C 1.50698 * 120.75570 * 359.97275 * 26 2 1 28 28 H 1.09000 * 109.46762 * 270.22693 * 1 2 3 29 29 H 1.08994 * 109.47296 * 30.22314 * 1 2 3 30 30 H 1.08992 * 109.47283 * 150.22668 * 1 2 3 31 31 H 1.08007 * 119.55105 * 0.02913 * 3 2 1 32 32 H 1.09008 * 109.58328 * 353.41388 * 9 8 6 33 33 H 1.08999 * 109.58671 * 113.83318 * 9 8 6 34 34 H 1.09010 * 109.56375 * 185.55170 * 10 9 8 35 35 H 1.08993 * 109.39049 * 65.51415 * 10 9 8 36 36 H 1.08995 * 109.46497 * 301.22359 * 11 10 9 37 37 H 1.09007 * 109.45813 * 181.26182 * 11 10 9 38 38 H 1.08999 * 109.46991 * 304.82904 * 13 12 11 39 39 H 1.08994 * 109.47243 * 64.83464 * 13 12 11 40 40 H 0.96696 * 114.00413 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99661 * 0.15294 * 15 12 11 42 42 H 0.97003 * 119.99384 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.58501 * 246.15996 * 24 8 6 44 44 H 1.08996 * 109.58667 * 6.44183 * 24 8 6 45 45 H 1.08004 * 120.46539 * 180.02562 * 25 5 4 46 46 H 1.08993 * 109.47032 * 269.72528 * 27 26 2 47 47 H 1.09001 * 109.47430 * 149.72475 * 27 26 2 48 48 H 1.09003 * 109.46808 * 29.72701 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5218 1.2096 -0.0061 5 6 4.2295 0.0865 -0.0070 6 6 5.7097 0.1511 -0.0133 7 8 6.3611 -0.8006 0.3697 8 7 6.3338 1.2653 -0.4441 9 6 5.5601 2.4242 -0.9099 10 6 6.0403 2.8143 -2.3065 11 6 7.5539 3.0388 -2.2788 12 6 8.2562 1.7421 -1.8694 13 6 9.7708 1.9584 -1.8738 14 8 10.4296 0.7199 -1.6016 15 7 7.9113 0.6785 -2.8159 16 6 8.4241 -0.5801 -2.6483 17 1 9.0825 -0.7887 -1.8179 18 6 8.0978 -1.5878 -3.5454 19 7 7.2950 -1.3336 -4.5570 20 14 8.7968 -3.3048 -3.3163 21 1 7.8776 -4.1042 -2.4669 22 1 8.9430 -3.9606 -4.6406 23 1 10.1255 -3.2147 -2.6591 24 6 7.8010 1.3421 -0.4620 25 6 3.5923 -1.1518 -0.0020 26 6 2.2067 -1.1962 0.0047 27 6 1.4780 -2.5152 0.0104 28 1 -0.3633 0.0041 1.0277 29 1 -0.3633 0.8879 -0.5173 30 1 -0.3633 -0.8919 -0.5103 31 1 1.6648 2.1306 0.0005 32 1 4.5018 2.1656 -0.9479 33 1 5.7095 3.2613 -0.2279 34 1 5.5422 3.7315 -2.6209 35 1 5.8040 2.0135 -3.0072 36 1 7.7916 3.8231 -1.5602 37 1 7.8946 3.3390 -3.2698 38 1 10.0821 2.3285 -2.8506 39 1 10.0360 2.6870 -1.1077 40 1 11.3945 0.7820 -1.5893 41 1 7.3197 0.8658 -3.5615 42 1 7.0667 -2.0379 -5.1838 43 1 8.1366 2.0893 0.2570 44 1 8.2209 0.3704 -0.2021 45 1 4.1695 -2.0647 -0.0023 46 1 1.3070 -2.8314 1.0394 47 1 2.0788 -3.2646 -0.5048 48 1 0.5209 -2.4037 -0.4993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502578787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:59 Heat of formation + Delta-G solvation = -14.102915 kcal Electronic energy + Delta-G solvation = -30613.265541 eV Core-core repulsion = 26669.344832 eV Total energy + Delta-G solvation = -3943.920709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74802 -39.27907 -37.53871 -35.68450 -34.74668 -33.55141 -32.38927 -32.09052 -30.92295 -28.68630 -28.44712 -27.40414 -25.25153 -25.06392 -23.41284 -22.77999 -22.26782 -21.41998 -19.52961 -18.26976 -17.38245 -17.05647 -16.44060 -16.09218 -15.59506 -15.29840 -15.03555 -14.88652 -14.40781 -14.21881 -14.09794 -13.75660 -13.47343 -13.19851 -13.10411 -13.02533 -12.91375 -12.86343 -12.67106 -12.46596 -12.10379 -11.97567 -11.92837 -11.54477 -11.49753 -11.04849 -10.68897 -10.65797 -10.48739 -10.44976 -10.07934 -9.69665 -9.63061 -9.42776 -9.39652 -8.92638 -8.90915 -8.78638 -8.62831 -7.89222 -6.72887 -5.49782 -2.74657 0.82366 1.22871 3.14276 3.49522 3.62624 3.67612 3.71005 4.02768 4.33122 4.58168 4.70966 4.79475 4.81714 4.83148 4.91245 5.22205 5.29163 5.38474 5.41617 5.44341 5.45282 5.51935 5.60112 5.63009 5.66063 5.71781 5.83847 5.85415 5.95401 5.97342 5.99899 6.04352 6.15710 6.18512 6.25125 6.30242 6.34880 6.49880 6.51966 6.71485 6.78177 6.92728 6.98685 7.28780 7.78179 8.08528 8.23891 8.44970 8.68624 8.80036 9.81737 10.30046 10.66095 11.74075 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.004808 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.382194 B = 5822.645898 C = 7228.009760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.129 4.129 3 C 0.091 3.909 4 N -0.451 5.451 5 C 0.093 3.907 6 C 0.572 3.428 7 O -0.527 6.527 8 N -0.570 5.570 9 C 0.080 3.920 10 C -0.133 4.133 11 C -0.116 4.116 12 C 0.189 3.811 13 C 0.075 3.925 14 O -0.535 6.535 15 N -0.702 5.702 16 C -0.191 4.191 17 H 0.092 0.908 18 C -0.026 4.026 19 N -0.948 5.948 20 Si 0.901 3.099 21 H -0.295 1.295 22 H -0.299 1.299 23 H -0.283 1.283 24 C 0.108 3.892 25 C -0.106 4.106 26 C -0.050 4.050 27 C -0.118 4.118 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.136 0.864 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.023 0.977 40 H 0.350 0.650 41 H 0.381 0.619 42 H 0.247 0.753 43 H 0.046 0.954 44 H 0.102 0.898 45 H 0.147 0.853 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.870 9.141 9.346 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.131 4.131 3 C -0.068 4.068 4 N -0.163 5.163 5 C -0.043 4.043 6 C 0.358 3.642 7 O -0.403 6.403 8 N -0.300 5.300 9 C -0.043 4.043 10 C -0.172 4.172 11 C -0.154 4.154 12 C 0.095 3.905 13 C -0.006 4.006 14 O -0.338 6.338 15 N -0.342 5.342 16 C -0.322 4.322 17 H 0.109 0.891 18 C -0.219 4.219 19 N -0.600 5.600 20 Si 0.734 3.266 21 H -0.223 1.223 22 H -0.226 1.226 23 H -0.209 1.209 24 C -0.016 4.016 25 C -0.127 4.127 26 C -0.058 4.058 27 C -0.175 4.175 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.195 0.805 41 H 0.216 0.784 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.164 0.836 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.559 9.023 9.624 17.540 hybrid contribution 0.455 -1.304 -0.450 1.453 sum -11.104 7.719 9.174 16.341 Atomic orbital electron populations 1.20783 0.90238 1.03301 1.02540 1.20899 0.97469 0.93646 1.01062 1.22759 0.89838 0.97490 0.96709 1.67587 1.07850 1.29238 1.11651 1.21320 0.94769 0.89381 0.98866 1.17668 0.85211 0.82687 0.78627 1.90777 1.65566 1.35566 1.48362 1.47548 1.06950 1.14032 1.61476 1.22629 1.00115 0.87657 0.93879 1.21832 0.95519 1.01512 0.98291 1.21639 0.95776 0.96639 1.01310 1.19953 0.90552 0.89329 0.90651 1.22747 0.95002 0.85676 0.97166 1.86972 1.21107 1.31331 1.94385 1.42416 1.56571 1.06205 1.29015 1.19536 1.19474 0.85371 1.07845 0.89059 1.24645 1.01162 0.97811 0.98287 1.69673 1.41226 1.32011 1.17050 0.86227 0.78687 0.85646 0.76017 1.22256 1.22556 1.20875 1.22191 0.78625 1.03336 0.97485 1.22014 0.94070 0.99294 0.97286 1.20171 0.93241 0.95781 0.96586 1.20878 1.00392 0.93306 1.02887 0.90839 0.91100 0.90930 0.82367 0.84809 0.92676 0.91739 0.90597 0.92121 0.91789 0.94405 0.95860 0.80486 0.78407 0.94292 0.93572 0.87987 0.83561 0.90449 0.90651 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.65 36.01 0.35 -0.46 16 2 C -0.13 -1.43 5.91 -104.36 -0.62 -2.05 16 3 C 0.09 1.08 10.86 -17.56 -0.19 0.89 16 4 N -0.45 -6.90 6.36 -9.80 -0.06 -6.96 16 5 C 0.09 1.70 6.46 -83.01 -0.54 1.16 16 6 C 0.57 12.40 7.62 -12.19 -0.09 12.31 16 7 O -0.53 -13.22 15.94 5.35 0.09 -13.13 16 8 N -0.57 -11.31 2.90 -174.00 -0.50 -11.81 16 9 C 0.08 1.30 5.96 -3.94 -0.02 1.28 16 10 C -0.13 -2.15 5.90 -26.84 -0.16 -2.31 16 11 C -0.12 -1.88 4.76 -26.69 -0.13 -2.01 16 12 C 0.19 3.77 0.68 -131.68 -0.09 3.68 16 13 C 0.08 1.37 6.09 37.16 0.23 1.59 16 14 O -0.54 -10.75 10.05 -35.23 -0.35 -11.11 16 15 N -0.70 -17.68 4.75 -47.10 -0.22 -17.91 16 16 C -0.19 -5.49 8.07 -15.06 -0.12 -5.61 16 17 H 0.09 2.71 5.27 -52.49 -0.28 2.43 16 18 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 19 N -0.95 -29.87 13.06 55.49 0.72 -29.15 16 20 Si 0.90 24.61 29.55 -169.99 -5.02 19.59 16 21 H -0.29 -8.18 7.11 56.52 0.40 -7.78 16 22 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 23 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 24 C 0.11 2.20 4.91 -3.69 -0.02 2.18 16 25 C -0.11 -1.77 9.33 -39.05 -0.36 -2.13 16 26 C -0.05 -0.64 5.91 -104.35 -0.62 -1.26 16 27 C -0.12 -1.14 9.68 36.00 0.35 -0.79 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.48 6.06 -51.93 -0.31 0.16 16 31 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.14 2.16 3.97 -79.75 -0.32 1.85 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.08 1.49 6.75 -51.93 -0.35 1.14 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.35 5.24 9.12 45.56 0.42 5.66 16 41 H 0.38 10.33 6.43 -40.82 -0.26 10.06 16 42 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 2.49 5.83 -51.93 -0.30 2.18 16 45 H 0.15 2.57 7.79 -52.48 -0.41 2.16 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 48 H 0.07 0.58 6.06 -51.93 -0.31 0.27 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -36.59 374.34 -8.18 -44.78 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -6.34 Total: 14.45 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.13 Total: 5.60 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -0.07 Total: -65.82 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.27 Total: -24.24 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.02 Total: 19.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.59 -8.18 -44.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502578787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.673 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds