Wall clock time and date at job start Tue Mar 31 2020 17:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38602 * 120.32450 * 2 1 4 4 N 1.31503 * 120.90051 * 180.30877 * 3 2 1 5 5 C 1.32746 * 121.64004 * 359.72352 * 4 3 2 6 6 C 1.48166 * 119.71704 * 180.02562 * 5 4 3 7 7 O 1.21519 * 119.99776 * 158.59786 * 6 5 4 8 8 N 1.34771 * 120.00200 * 338.59098 * 6 5 4 9 9 C 1.46923 * 120.63417 * 0.02562 * 8 6 5 10 10 C 1.52757 * 109.00836 * 233.58368 * 9 8 6 11 11 C 1.53036 * 109.38029 * 305.58000 * 10 9 8 12 12 C 1.53042 * 109.53648 * 61.24748 * 11 10 9 13 13 C 1.53003 * 109.49700 * 178.68341 * 12 11 10 14 14 O 1.42900 * 109.46999 * 184.83601 * 13 12 11 15 15 N 1.46498 * 109.52726 * 58.59655 * 12 11 10 16 16 C 1.36933 * 120.00137 * 180.14695 * 15 12 11 17 17 H 1.08002 * 119.99972 * 0.02562 * 16 15 12 18 18 C 1.38812 * 120.00295 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99518 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00302 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47062 * 89.99576 * 20 18 16 22 22 H 1.48504 * 109.47170 * 209.99463 * 20 18 16 23 23 H 1.48504 * 109.46909 * 329.99718 * 20 18 16 24 24 C 1.46935 * 120.62892 * 180.27863 * 8 6 5 25 25 C 1.39267 * 120.55399 * 0.02562 * 5 4 3 26 26 C 1.38581 * 120.32384 * 179.77698 * 2 1 3 27 27 C 1.50698 * 120.75570 * 359.97275 * 26 2 1 28 28 H 1.09000 * 109.46762 * 270.22693 * 1 2 3 29 29 H 1.08994 * 109.47296 * 30.22314 * 1 2 3 30 30 H 1.08992 * 109.47283 * 150.22668 * 1 2 3 31 31 H 1.08007 * 119.55105 * 0.02913 * 3 2 1 32 32 H 1.09008 * 109.58328 * 353.41388 * 9 8 6 33 33 H 1.08999 * 109.58671 * 113.83318 * 9 8 6 34 34 H 1.09010 * 109.56375 * 185.55170 * 10 9 8 35 35 H 1.08993 * 109.39049 * 65.51415 * 10 9 8 36 36 H 1.08995 * 109.46497 * 301.22359 * 11 10 9 37 37 H 1.09007 * 109.45813 * 181.26182 * 11 10 9 38 38 H 1.08999 * 109.46991 * 304.82904 * 13 12 11 39 39 H 1.08994 * 109.47243 * 64.83464 * 13 12 11 40 40 H 0.96696 * 114.00413 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99661 * 0.15294 * 15 12 11 42 42 H 0.97003 * 119.99384 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.58501 * 246.15996 * 24 8 6 44 44 H 1.08996 * 109.58667 * 6.44183 * 24 8 6 45 45 H 1.08004 * 120.46539 * 180.02562 * 25 5 4 46 46 H 1.08993 * 109.47032 * 269.72528 * 27 26 2 47 47 H 1.09001 * 109.47430 * 149.72475 * 27 26 2 48 48 H 1.09003 * 109.46808 * 29.72701 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5218 1.2096 -0.0061 5 6 4.2295 0.0865 -0.0070 6 6 5.7097 0.1511 -0.0133 7 8 6.3611 -0.8006 0.3697 8 7 6.3338 1.2653 -0.4441 9 6 5.5601 2.4242 -0.9099 10 6 6.0403 2.8143 -2.3065 11 6 7.5539 3.0388 -2.2788 12 6 8.2562 1.7421 -1.8694 13 6 9.7708 1.9584 -1.8738 14 8 10.4296 0.7199 -1.6016 15 7 7.9113 0.6785 -2.8159 16 6 8.4241 -0.5801 -2.6483 17 1 9.0825 -0.7887 -1.8179 18 6 8.0978 -1.5878 -3.5454 19 7 7.2950 -1.3336 -4.5570 20 14 8.7968 -3.3048 -3.3163 21 1 7.8776 -4.1042 -2.4669 22 1 8.9430 -3.9606 -4.6406 23 1 10.1255 -3.2147 -2.6591 24 6 7.8010 1.3421 -0.4620 25 6 3.5923 -1.1518 -0.0020 26 6 2.2067 -1.1962 0.0047 27 6 1.4780 -2.5152 0.0104 28 1 -0.3633 0.0041 1.0277 29 1 -0.3633 0.8879 -0.5173 30 1 -0.3633 -0.8919 -0.5103 31 1 1.6648 2.1306 0.0005 32 1 4.5018 2.1656 -0.9479 33 1 5.7095 3.2613 -0.2279 34 1 5.5422 3.7315 -2.6209 35 1 5.8040 2.0135 -3.0072 36 1 7.7916 3.8231 -1.5602 37 1 7.8946 3.3390 -3.2698 38 1 10.0821 2.3285 -2.8506 39 1 10.0360 2.6870 -1.1077 40 1 11.3945 0.7820 -1.5893 41 1 7.3197 0.8658 -3.5615 42 1 7.0667 -2.0379 -5.1838 43 1 8.1366 2.0893 0.2570 44 1 8.2209 0.3704 -0.2021 45 1 4.1695 -2.0647 -0.0023 46 1 1.3070 -2.8314 1.0394 47 1 2.0788 -3.2646 -0.5048 48 1 0.5209 -2.4037 -0.4993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502578787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:58 Heat of formation + Delta-G solvation = -41.988865 kcal Electronic energy + Delta-G solvation = -30614.474767 eV Core-core repulsion = 26669.344832 eV Total energy + Delta-G solvation = -3945.129935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98546 -40.67615 -39.13909 -37.20067 -35.91050 -35.30574 -33.85894 -33.38735 -32.55356 -30.50923 -29.50306 -28.44877 -26.61577 -26.45061 -25.55618 -23.78770 -23.49137 -22.79704 -20.93269 -19.84766 -19.26020 -18.39549 -17.81406 -17.72357 -16.96880 -16.77672 -16.42234 -16.15973 -15.93636 -15.73641 -15.39982 -15.29996 -15.02389 -14.74548 -14.49204 -14.23754 -13.97326 -13.84549 -13.72752 -13.63813 -13.47481 -13.41853 -13.16736 -12.91815 -12.77062 -12.68851 -12.52516 -12.47046 -12.06529 -11.89895 -11.82436 -11.35996 -11.32293 -11.24505 -10.88142 -10.57286 -10.51879 -10.02030 -9.86417 -9.48489 -8.81221 -7.81485 -5.02474 -0.33820 0.17272 1.37429 1.42483 1.48898 1.73857 2.09140 2.63010 2.77388 3.11923 3.38567 3.62074 3.68036 3.74035 3.86543 3.88785 3.91382 4.05737 4.08805 4.17512 4.27761 4.35136 4.52266 4.56910 4.59870 4.62489 4.67403 4.74140 4.78222 4.82469 4.84642 4.90568 4.97544 5.00973 5.02729 5.09253 5.13297 5.20521 5.29058 5.38040 5.45778 5.52147 5.67560 5.87761 5.91935 6.43048 6.49037 6.72267 7.16768 7.23252 7.51581 8.20247 8.43438 9.43210 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.004808 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.382194 B = 5822.645898 C = 7228.009760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C 0.092 3.908 4 N -0.456 5.456 5 C 0.060 3.940 6 C 0.555 3.445 7 O -0.585 6.585 8 N -0.571 5.571 9 C 0.076 3.924 10 C -0.128 4.128 11 C -0.109 4.109 12 C 0.175 3.825 13 C 0.076 3.924 14 O -0.571 6.571 15 N -0.709 5.709 16 C -0.162 4.162 17 H 0.081 0.919 18 C -0.093 4.093 19 N -0.980 5.980 20 Si 0.947 3.053 21 H -0.309 1.309 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.111 3.889 25 C -0.133 4.133 26 C -0.055 4.055 27 C -0.117 4.117 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.205 0.795 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.031 0.969 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.373 0.627 41 H 0.369 0.631 42 H 0.239 0.761 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.116 0.884 46 H 0.094 0.906 47 H 0.061 0.939 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.303 12.461 10.289 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.068 4.068 4 N -0.168 5.168 5 C -0.075 4.075 6 C 0.343 3.657 7 O -0.466 6.466 8 N -0.300 5.300 9 C -0.045 4.045 10 C -0.166 4.166 11 C -0.147 4.147 12 C 0.084 3.916 13 C -0.004 4.004 14 O -0.376 6.376 15 N -0.348 5.348 16 C -0.295 4.295 17 H 0.099 0.901 18 C -0.282 4.282 19 N -0.635 5.635 20 Si 0.780 3.220 21 H -0.238 1.238 22 H -0.223 1.223 23 H -0.200 1.200 24 C -0.014 4.014 25 C -0.154 4.154 26 C -0.063 4.063 27 C -0.173 4.173 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.221 0.779 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.221 0.779 41 H 0.202 0.798 42 H 0.048 0.952 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.946 12.411 10.592 21.464 hybrid contribution 1.112 -2.201 -0.610 2.540 sum -12.834 10.210 9.983 19.199 Atomic orbital electron populations 1.20934 0.86513 1.04962 1.04260 1.21431 0.99889 0.92355 0.97647 1.23585 0.88724 0.99738 0.94737 1.67470 1.09502 1.27700 1.12119 1.20853 0.93116 0.90900 1.02636 1.18390 0.87021 0.82378 0.77940 1.90714 1.67236 1.37543 1.51095 1.47770 1.06976 1.14627 1.60635 1.22905 1.00021 0.87043 0.94509 1.21799 0.96004 1.01724 0.97051 1.21650 0.95197 0.95216 1.02616 1.20430 0.92456 0.89676 0.89029 1.22702 0.93192 0.85772 0.98753 1.86870 1.23281 1.32972 1.94525 1.42529 1.56115 1.06430 1.29715 1.19643 1.17175 0.86822 1.05842 0.90120 1.25207 1.03099 1.00579 0.99328 1.69788 1.43428 1.32166 1.18142 0.85468 0.78135 0.82779 0.75628 1.23786 1.22254 1.19995 1.22073 0.79289 1.01600 0.98425 1.21979 0.96064 0.97902 0.99455 1.20536 0.91641 0.98304 0.95789 1.20971 1.00882 0.91260 1.04188 0.88765 0.88888 0.89903 0.77875 0.84468 0.89566 0.87722 0.94983 0.88098 0.91377 0.94212 0.91581 0.77914 0.79779 0.95185 0.90267 0.92892 0.86575 0.88719 0.92044 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.65 71.24 0.69 -0.34 16 2 C -0.11 -2.14 5.91 -19.69 -0.12 -2.25 16 3 C 0.09 1.90 10.86 84.83 0.92 2.82 16 4 N -0.46 -13.48 6.36 -184.90 -1.18 -14.66 16 5 C 0.06 2.28 6.46 41.89 0.27 2.55 16 6 C 0.56 25.65 7.62 86.88 0.66 26.31 16 7 O -0.59 -32.20 15.94 -3.78 -0.06 -32.26 16 8 N -0.57 -23.05 2.90 -822.71 -2.38 -25.44 16 9 C 0.08 2.36 5.96 86.22 0.51 2.87 16 10 C -0.13 -3.85 5.90 30.53 0.18 -3.67 16 11 C -0.11 -3.24 4.76 30.62 0.15 -3.09 16 12 C 0.18 6.88 0.68 3.69 0.00 6.88 16 13 C 0.08 2.63 6.09 71.98 0.44 3.06 16 14 O -0.57 -22.83 10.05 -148.98 -1.50 -24.33 16 15 N -0.71 -36.76 4.75 -302.94 -1.44 -38.20 16 16 C -0.16 -9.71 8.07 84.03 0.68 -9.03 16 17 H 0.08 5.01 5.27 -2.91 -0.02 4.99 16 18 C -0.09 -5.89 5.50 84.86 0.47 -5.42 16 19 N -0.98 -64.58 13.06 21.65 0.28 -64.30 16 20 Si 0.95 53.06 29.55 68.60 2.03 55.09 16 21 H -0.31 -17.79 7.11 99.48 0.71 -17.09 16 22 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16 23 H -0.27 -14.77 7.11 99.48 0.71 -14.06 16 24 C 0.11 4.54 4.91 86.37 0.42 4.96 16 25 C -0.13 -4.75 9.33 22.61 0.21 -4.54 16 26 C -0.06 -1.39 5.91 -19.69 -0.12 -1.50 16 27 C -0.12 -2.11 9.68 71.24 0.69 -1.42 16 28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.55 8.09 -2.39 -0.02 0.53 16 30 H 0.08 0.67 6.06 -2.39 -0.01 0.66 16 31 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.14 4.24 3.97 -57.33 -0.23 4.01 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.03 1.26 6.75 -2.39 -0.02 1.24 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.37 10.88 9.12 -74.06 -0.68 10.21 16 41 H 0.37 20.75 6.43 -92.71 -0.60 20.16 16 42 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.05 2.71 5.83 -2.39 -0.01 2.70 16 45 H 0.12 4.69 7.79 -2.91 -0.02 4.66 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 48 H 0.10 1.27 6.06 -2.39 -0.01 1.26 16 Total: -1.00 -88.86 374.34 1.33 -87.53 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.48 Total: 38.37 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 6.06 Total: 18.19 kcal Atomic # 7 Polarization: -137.88 SS G_CDS: -4.71 Total: -142.59 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -1.56 Total: -56.59 kcal Atomic # 14 Polarization: 53.06 SS G_CDS: 2.03 Total: 55.09 kcal Total: -88.86 1.33 -87.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502578787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.541 kcal (2) G-P(sol) polarization free energy of solvation -88.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds