Wall clock time and date at job start Tue Mar 31 2020 17:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38633 * 120.75533 * 2 1 4 4 C 1.38555 * 119.35103 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.54611 * 179.97438 * 4 3 2 6 6 N 1.31531 * 120.90157 * 359.74043 * 4 3 2 7 7 C 1.32710 * 121.64357 * 0.52675 * 6 4 3 8 8 C 1.48173 * 119.72230 * 179.75069 * 7 6 4 9 9 O 1.21511 * 120.00158 * 179.72383 * 8 7 6 10 10 N 1.34776 * 119.99778 * 359.72827 * 8 7 6 11 11 C 1.46505 * 119.99780 * 185.24096 * 10 8 7 12 12 C 1.53002 * 109.45802 * 54.98360 * 11 10 8 13 13 O 1.42901 * 109.47322 * 54.73653 * 12 11 10 14 14 C 1.53037 * 109.44706 * 174.94396 * 11 10 8 15 15 C 1.53198 * 109.31067 * 58.65596 * 14 11 10 16 16 N 1.46925 * 108.77945 * 54.63009 * 15 14 11 17 17 C 1.36932 * 120.63029 * 126.37426 * 16 15 14 18 18 H 1.08003 * 119.99477 * 210.33940 * 17 16 15 19 19 C 1.38811 * 120.00363 * 30.32964 * 17 16 15 20 20 N 1.31610 * 119.99696 * 15.13049 * 19 17 16 21 21 Si 1.86797 * 119.99967 * 195.13465 * 19 17 16 22 22 H 1.48500 * 109.47351 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47238 * 120.00201 * 21 19 17 24 24 H 1.48508 * 109.46968 * 239.99815 * 21 19 17 25 25 C 1.46931 * 118.73487 * 306.39326 * 16 15 14 26 26 C 1.53039 * 109.46223 * 295.01012 * 11 10 8 27 27 C 1.38594 * 120.75723 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47230 * 270.02203 * 1 2 3 29 29 H 1.08999 * 109.47533 * 30.02626 * 1 2 3 30 30 H 1.09006 * 109.47256 * 150.02391 * 1 2 3 31 31 H 1.07989 * 120.32182 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46926 * 90.00318 * 5 4 3 33 33 H 1.09006 * 109.46773 * 209.99580 * 5 4 3 34 34 H 1.08988 * 109.47431 * 330.00262 * 5 4 3 35 35 H 0.97000 * 120.00359 * 5.24489 * 10 8 7 36 36 H 1.09003 * 109.47228 * 294.73552 * 12 11 10 37 37 H 1.09006 * 109.47184 * 174.73758 * 12 11 10 38 38 H 0.96696 * 114.00104 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.49712 * 178.59808 * 14 11 10 40 40 H 1.08997 * 109.50493 * 298.69802 * 14 11 10 41 41 H 1.09001 * 109.58055 * 294.84158 * 15 14 11 42 42 H 1.08999 * 109.58746 * 174.42091 * 15 14 11 43 43 H 0.97006 * 120.00238 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.58984 * 293.81969 * 25 16 15 45 45 H 1.08997 * 109.58198 * 173.39590 * 25 16 15 46 46 H 1.09000 * 109.49605 * 61.30554 * 26 11 10 47 47 H 1.08999 * 109.50034 * 181.40830 * 26 11 10 48 48 H 1.08003 * 120.46698 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6010 1.1574 0.0005 5 6 4.3760 2.4498 0.0000 6 7 4.2486 0.0126 0.0062 7 6 3.6081 -1.1497 0.0011 8 6 4.3806 -2.4142 0.0022 9 8 3.7993 -3.4812 0.0027 10 7 5.7279 -2.3807 0.0028 11 6 6.4916 -3.6257 -0.1121 12 6 6.0486 -4.3815 -1.3665 13 8 6.1688 -3.5264 -2.5051 14 6 7.9836 -3.3008 -0.2129 15 6 8.4159 -2.5141 1.0286 16 7 8.0446 -3.2795 2.2265 17 6 8.9791 -3.5759 3.1824 18 1 8.8870 -4.4805 3.7653 19 6 10.0447 -2.7140 3.4022 20 7 10.0098 -1.4889 2.9226 21 14 11.5283 -3.2930 4.3785 22 1 11.3221 -4.7006 4.8042 23 1 12.7440 -3.2049 3.5304 24 1 11.6979 -2.4334 5.5776 25 6 6.6515 -3.7212 2.3789 26 6 6.2391 -4.4944 1.1223 27 6 2.2157 -1.1910 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6936 2.1366 -0.0004 32 1 4.5625 2.7621 1.0275 33 1 5.3264 2.3033 -0.5134 34 1 3.7999 3.2187 -0.5145 35 1 6.1920 -1.5324 0.0792 36 1 5.0103 -4.6940 -1.2548 37 1 6.6796 -5.2597 -1.5034 38 1 5.9040 -3.9407 -3.3378 39 1 8.5545 -4.2274 -0.2734 40 1 8.1661 -2.7017 -1.1050 41 1 7.9125 -1.5474 1.0420 42 1 9.4956 -2.3660 1.0097 43 1 10.7543 -0.8863 3.0765 44 1 6.0043 -2.8530 2.5025 45 1 6.5672 -4.3695 3.2510 46 1 5.1799 -4.7448 1.1806 47 1 6.8264 -5.4098 1.0493 48 1 1.6958 -2.1377 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505383735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:45 Heat of formation + Delta-G solvation = -31.963973 kcal Electronic energy + Delta-G solvation = -30058.169673 eV Core-core repulsion = 26113.474450 eV Total energy + Delta-G solvation = -3944.695223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76407 -39.66231 -37.36734 -36.05082 -34.44940 -33.89624 -32.90701 -31.70009 -30.23512 -29.82508 -28.14392 -27.59714 -26.66409 -24.58168 -23.78684 -22.26074 -21.32374 -21.11684 -20.23461 -18.60832 -17.66102 -17.07921 -16.76672 -16.33125 -15.98216 -15.21957 -15.00808 -14.74758 -14.64564 -14.37102 -13.93070 -13.78675 -13.53762 -13.51477 -13.22917 -13.05205 -12.98642 -12.78092 -12.60987 -12.45952 -12.29589 -12.06867 -11.78911 -11.72741 -11.40535 -11.18425 -10.92282 -10.72847 -10.36707 -10.25944 -10.10537 -9.91481 -9.76984 -9.62650 -9.59827 -9.51157 -9.05376 -9.01505 -8.51373 -8.41995 -6.58844 -5.75306 -3.19914 0.68517 1.12819 2.93481 3.38782 3.42372 3.46812 3.49097 3.92233 4.11225 4.42234 4.49176 4.53058 4.64691 4.86950 4.97101 5.14551 5.25236 5.27380 5.37284 5.42596 5.46064 5.50691 5.55338 5.56580 5.60308 5.63212 5.68339 5.78502 5.90919 6.01657 6.04073 6.11255 6.14914 6.35431 6.37009 6.56131 6.61074 6.64555 6.70352 6.85422 6.99613 7.09538 7.34771 7.65614 7.74396 7.83429 7.84955 8.07962 8.50062 8.57452 9.25372 9.87949 10.46785 11.33086 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.003649 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.211621 B = 7672.322096 C = 8658.612662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.159 4.159 4 C 0.131 3.869 5 C -0.105 4.105 6 N -0.458 5.458 7 C 0.098 3.902 8 C 0.574 3.426 9 O -0.546 6.546 10 N -0.674 5.674 11 C 0.191 3.809 12 C 0.062 3.938 13 O -0.566 6.566 14 C -0.142 4.142 15 C 0.173 3.827 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.152 3.848 26 C -0.143 4.143 27 C -0.125 4.125 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.369 0.631 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.087 0.913 43 H 0.253 0.747 44 H 0.016 0.984 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 4.074 -10.158 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.009 4.009 5 C -0.162 4.162 6 N -0.171 5.171 7 C -0.040 4.040 8 C 0.358 3.642 9 O -0.425 6.425 10 N -0.324 5.324 11 C 0.105 3.895 12 C -0.017 4.017 13 O -0.369 6.369 14 C -0.182 4.182 15 C 0.047 3.953 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.025 3.975 26 C -0.183 4.183 27 C -0.146 4.146 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.215 0.785 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.441 3.824 -9.662 18.612 hybrid contribution -0.071 -0.205 0.135 0.255 sum -15.511 3.619 -9.527 18.560 Atomic orbital electron populations 1.20812 0.89860 1.03364 1.03032 1.20306 0.96938 0.92610 0.95894 1.22014 0.94807 0.98731 1.02375 1.21318 0.91102 0.93904 0.94527 1.20743 1.00512 0.91443 1.03515 1.67452 1.41013 0.97587 1.11006 1.21282 0.91625 0.92316 0.98808 1.17755 0.82619 0.87011 0.76794 1.90663 1.70347 1.29727 1.51738 1.45812 1.05049 1.11011 1.70481 1.20372 0.92350 0.83963 0.92822 1.22748 1.00913 0.92249 0.85741 1.86509 1.90282 1.42754 1.17389 1.22455 0.92134 1.02363 1.01214 1.20740 1.01150 0.91025 0.82393 1.44036 1.03373 1.64108 1.19842 1.19211 1.02889 1.02253 1.13812 0.91801 1.25098 1.00454 0.94648 0.99292 1.70023 1.31120 1.04417 1.49009 0.86239 0.83049 0.78141 0.79427 1.20287 1.21602 1.21773 1.20806 0.87011 0.95614 0.94022 1.22391 1.01604 0.98613 0.95688 1.21961 0.93903 0.99354 0.99386 0.90379 0.90982 0.90839 0.84597 0.90048 0.89982 0.90770 0.74936 0.91696 0.93466 0.78540 0.91251 0.91818 0.96309 0.89436 0.93732 0.96570 0.92828 0.90908 0.91508 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.06 36.00 0.36 -0.45 16 2 C -0.05 -0.54 5.91 -104.35 -0.62 -1.15 16 3 C -0.16 -1.66 9.45 -39.32 -0.37 -2.04 16 4 C 0.13 1.67 6.78 -82.60 -0.56 1.11 16 5 C -0.10 -1.03 10.17 36.01 0.37 -0.66 16 6 N -0.46 -7.24 9.46 -6.06 -0.06 -7.30 16 7 C 0.10 1.59 6.75 -83.01 -0.56 1.03 16 8 C 0.57 10.36 7.22 -12.18 -0.09 10.27 16 9 O -0.55 -10.36 12.63 5.36 0.07 -10.29 16 10 N -0.67 -12.45 3.89 -48.40 -0.19 -12.63 16 11 C 0.19 3.49 0.44 -131.78 -0.06 3.44 16 12 C 0.06 0.99 5.54 37.16 0.21 1.20 16 13 O -0.57 -8.58 12.94 -35.23 -0.46 -9.04 16 14 C -0.14 -2.80 4.89 -26.61 -0.13 -2.93 16 15 C 0.17 4.12 5.00 -3.71 -0.02 4.10 16 16 N -0.59 -14.97 2.98 -172.32 -0.51 -15.49 16 17 C -0.25 -6.98 9.57 -15.06 -0.14 -7.12 16 18 H 0.06 1.75 7.87 -52.48 -0.41 1.34 16 19 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 20 N -0.90 -26.15 11.25 55.49 0.62 -25.53 16 21 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 C 0.15 3.40 6.26 -3.71 -0.02 3.37 16 26 C -0.14 -2.75 4.74 -26.61 -0.13 -2.87 16 27 C -0.13 -1.69 9.34 -39.05 -0.36 -2.05 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.52 8.08 -51.94 -0.42 0.10 16 35 H 0.41 7.99 6.47 -40.82 -0.26 7.72 16 36 H 0.06 1.08 6.17 -51.93 -0.32 0.76 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.37 3.83 9.12 45.56 0.42 4.25 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 1.21 7.80 -51.93 -0.40 0.80 16 41 H 0.02 0.47 6.84 -51.93 -0.36 0.12 16 42 H 0.09 2.33 6.17 -51.93 -0.32 2.01 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 45 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 46 H 0.07 1.39 6.40 -51.93 -0.33 1.05 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.15 1.85 7.64 -52.48 -0.40 1.45 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -32.79 380.76 -8.59 -41.38 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.56 Total: 11.10 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.21 Total: 5.27 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.14 Total: -60.94 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.39 Total: -19.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.79 -8.59 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505383735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.414 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds