Wall clock time and date at job start Tue Mar 31 2020 17:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38633 * 120.75533 * 2 1 4 4 C 1.38555 * 119.35103 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.54611 * 179.97438 * 4 3 2 6 6 N 1.31531 * 120.90157 * 359.74043 * 4 3 2 7 7 C 1.32710 * 121.64357 * 0.52675 * 6 4 3 8 8 C 1.48173 * 119.72230 * 179.75069 * 7 6 4 9 9 O 1.21511 * 120.00158 * 179.72383 * 8 7 6 10 10 N 1.34776 * 119.99778 * 359.72827 * 8 7 6 11 11 C 1.46505 * 119.99780 * 185.24096 * 10 8 7 12 12 C 1.53002 * 109.45802 * 54.98360 * 11 10 8 13 13 O 1.42901 * 109.47322 * 54.73653 * 12 11 10 14 14 C 1.53037 * 109.44706 * 174.94396 * 11 10 8 15 15 C 1.53198 * 109.31067 * 58.65596 * 14 11 10 16 16 N 1.46925 * 108.77945 * 54.63009 * 15 14 11 17 17 C 1.36932 * 120.63029 * 126.37426 * 16 15 14 18 18 H 1.08003 * 119.99477 * 210.33940 * 17 16 15 19 19 C 1.38811 * 120.00363 * 30.32964 * 17 16 15 20 20 N 1.31610 * 119.99696 * 15.13049 * 19 17 16 21 21 Si 1.86797 * 119.99967 * 195.13465 * 19 17 16 22 22 H 1.48500 * 109.47351 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47238 * 120.00201 * 21 19 17 24 24 H 1.48508 * 109.46968 * 239.99815 * 21 19 17 25 25 C 1.46931 * 118.73487 * 306.39326 * 16 15 14 26 26 C 1.53039 * 109.46223 * 295.01012 * 11 10 8 27 27 C 1.38594 * 120.75723 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47230 * 270.02203 * 1 2 3 29 29 H 1.08999 * 109.47533 * 30.02626 * 1 2 3 30 30 H 1.09006 * 109.47256 * 150.02391 * 1 2 3 31 31 H 1.07989 * 120.32182 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46926 * 90.00318 * 5 4 3 33 33 H 1.09006 * 109.46773 * 209.99580 * 5 4 3 34 34 H 1.08988 * 109.47431 * 330.00262 * 5 4 3 35 35 H 0.97000 * 120.00359 * 5.24489 * 10 8 7 36 36 H 1.09003 * 109.47228 * 294.73552 * 12 11 10 37 37 H 1.09006 * 109.47184 * 174.73758 * 12 11 10 38 38 H 0.96696 * 114.00104 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.49712 * 178.59808 * 14 11 10 40 40 H 1.08997 * 109.50493 * 298.69802 * 14 11 10 41 41 H 1.09001 * 109.58055 * 294.84158 * 15 14 11 42 42 H 1.08999 * 109.58746 * 174.42091 * 15 14 11 43 43 H 0.97006 * 120.00238 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.58984 * 293.81969 * 25 16 15 45 45 H 1.08997 * 109.58198 * 173.39590 * 25 16 15 46 46 H 1.09000 * 109.49605 * 61.30554 * 26 11 10 47 47 H 1.08999 * 109.50034 * 181.40830 * 26 11 10 48 48 H 1.08003 * 120.46698 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6010 1.1574 0.0005 5 6 4.3760 2.4498 0.0000 6 7 4.2486 0.0126 0.0062 7 6 3.6081 -1.1497 0.0011 8 6 4.3806 -2.4142 0.0022 9 8 3.7993 -3.4812 0.0027 10 7 5.7279 -2.3807 0.0028 11 6 6.4916 -3.6257 -0.1121 12 6 6.0486 -4.3815 -1.3665 13 8 6.1688 -3.5264 -2.5051 14 6 7.9836 -3.3008 -0.2129 15 6 8.4159 -2.5141 1.0286 16 7 8.0446 -3.2795 2.2265 17 6 8.9791 -3.5759 3.1824 18 1 8.8870 -4.4805 3.7653 19 6 10.0447 -2.7140 3.4022 20 7 10.0098 -1.4889 2.9226 21 14 11.5283 -3.2930 4.3785 22 1 11.3221 -4.7006 4.8042 23 1 12.7440 -3.2049 3.5304 24 1 11.6979 -2.4334 5.5776 25 6 6.6515 -3.7212 2.3789 26 6 6.2391 -4.4944 1.1223 27 6 2.2157 -1.1910 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6936 2.1366 -0.0004 32 1 4.5625 2.7621 1.0275 33 1 5.3264 2.3033 -0.5134 34 1 3.7999 3.2187 -0.5145 35 1 6.1920 -1.5324 0.0792 36 1 5.0103 -4.6940 -1.2548 37 1 6.6796 -5.2597 -1.5034 38 1 5.9040 -3.9407 -3.3378 39 1 8.5545 -4.2274 -0.2734 40 1 8.1661 -2.7017 -1.1050 41 1 7.9125 -1.5474 1.0420 42 1 9.4956 -2.3660 1.0097 43 1 10.7543 -0.8863 3.0765 44 1 6.0043 -2.8530 2.5025 45 1 6.5672 -4.3695 3.2510 46 1 5.1799 -4.7448 1.1806 47 1 6.8264 -5.4098 1.0493 48 1 1.6958 -2.1377 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505383735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:44 Heat of formation + Delta-G solvation = -55.208700 kcal Electronic energy + Delta-G solvation = -30059.177640 eV Core-core repulsion = 26113.474450 eV Total energy + Delta-G solvation = -3945.703190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94716 -40.92446 -38.87590 -37.46446 -35.71601 -35.17616 -34.04013 -33.38528 -31.89870 -31.58655 -29.00638 -28.44684 -28.28555 -25.75785 -25.57658 -24.01636 -22.69433 -22.24530 -21.66850 -20.16226 -19.01179 -18.67087 -18.14588 -17.45729 -16.95630 -16.85284 -16.48622 -16.30643 -15.86601 -15.80912 -15.45906 -15.20171 -14.95706 -14.74655 -14.54406 -14.31644 -14.13103 -13.98429 -13.74975 -13.40095 -13.29787 -13.24527 -13.09699 -13.02852 -12.99956 -12.65637 -12.62466 -12.54783 -12.23150 -12.01966 -11.85567 -11.49573 -11.47636 -11.17229 -10.75722 -10.57065 -10.50427 -10.36440 -10.08123 -9.86021 -8.65925 -7.87537 -5.36242 -0.34546 0.20641 1.46199 1.47795 1.58665 1.73619 2.12109 2.50645 2.82587 3.06519 3.24198 3.30159 3.61643 3.66856 3.67531 3.91235 3.97038 4.02738 4.04674 4.21441 4.39554 4.41840 4.50781 4.52368 4.62603 4.63001 4.67307 4.70302 4.75086 4.77998 4.81841 4.88271 4.95134 5.00131 5.06729 5.14259 5.17154 5.23443 5.25571 5.28678 5.41053 5.59843 5.63313 5.68881 5.70304 6.39127 6.50732 6.85247 6.89057 7.14319 7.19256 7.82644 8.37785 9.18825 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.003649 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.211621 B = 7672.322096 C = 8658.612662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.145 4.145 4 C 0.113 3.887 5 C -0.102 4.102 6 N -0.492 5.492 7 C 0.064 3.936 8 C 0.570 3.430 9 O -0.562 6.562 10 N -0.679 5.679 11 C 0.188 3.812 12 C 0.074 3.926 13 O -0.579 6.579 14 C -0.125 4.125 15 C 0.184 3.816 16 N -0.604 5.604 17 C -0.267 4.267 18 H 0.064 0.936 19 C -0.046 4.046 20 N -0.931 5.931 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.293 1.293 25 C 0.154 3.846 26 C -0.129 4.129 27 C -0.132 4.132 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.178 0.822 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.406 0.594 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.392 0.608 39 H 0.074 0.926 40 H 0.071 0.929 41 H -0.002 1.002 42 H 0.056 0.944 43 H 0.250 0.750 44 H -0.001 1.001 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.089 4.414 -10.958 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 C -0.164 4.164 4 C -0.027 4.027 5 C -0.160 4.160 6 N -0.206 5.206 7 C -0.073 4.073 8 C 0.356 3.644 9 O -0.442 6.442 10 N -0.328 5.328 11 C 0.102 3.898 12 C -0.005 4.005 13 O -0.386 6.386 14 C -0.164 4.164 15 C 0.058 3.942 16 N -0.328 5.328 17 C -0.397 4.397 18 H 0.082 0.918 19 C -0.242 4.242 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.220 1.220 25 C 0.028 3.972 26 C -0.169 4.169 27 C -0.153 4.153 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.195 0.805 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.241 0.759 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.016 0.984 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.017 0.983 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.219 4.134 -10.489 20.581 hybrid contribution 0.377 -0.200 0.391 0.579 sum -16.842 3.934 -10.098 20.027 Atomic orbital electron populations 1.20910 0.86808 1.04875 1.04153 1.20762 0.98951 0.91592 0.94104 1.22461 0.93886 1.00369 0.99726 1.21907 0.92715 0.93748 0.94325 1.20826 1.00143 0.91079 1.03910 1.67375 1.42352 0.98442 1.12412 1.21110 0.92510 0.91759 1.01917 1.18124 0.82383 0.87872 0.75998 1.90624 1.70497 1.30513 1.52581 1.45827 1.05446 1.10539 1.70950 1.20378 0.91363 0.84181 0.93893 1.22511 1.00826 0.92169 0.84944 1.86454 1.90440 1.43349 1.18330 1.22216 0.93335 1.01819 0.99066 1.20494 0.98883 0.90842 0.83932 1.44246 1.04216 1.64255 1.20062 1.19518 1.03646 1.02281 1.14242 0.91796 1.25858 1.03001 0.94687 1.00613 1.70178 1.31709 1.05439 1.50361 0.85193 0.79432 0.77966 0.77729 1.19176 1.21445 1.21968 1.20822 0.85368 0.95190 0.95809 1.22210 1.01739 0.98486 0.94488 1.22102 0.92984 1.00744 0.99509 0.89240 0.88561 0.90319 0.80485 0.89850 0.91515 0.87286 0.75792 0.92211 0.91490 0.75934 0.90783 0.91038 0.98415 0.92552 0.94051 0.98329 0.93005 0.90549 0.90584 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.06 71.23 0.72 -0.48 16 2 C -0.05 -0.89 5.91 -19.69 -0.12 -1.01 16 3 C -0.14 -2.63 9.45 22.44 0.21 -2.42 16 4 C 0.11 2.77 6.78 42.68 0.29 3.06 16 5 C -0.10 -1.89 10.17 71.24 0.72 -1.16 16 6 N -0.49 -15.98 9.46 -173.09 -1.64 -17.61 16 7 C 0.06 2.13 6.75 41.91 0.28 2.41 16 8 C 0.57 21.18 7.22 86.88 0.63 21.81 16 9 O -0.56 -21.64 12.63 -3.75 -0.05 -21.69 16 10 N -0.68 -25.88 3.89 -425.33 -1.65 -27.53 16 11 C 0.19 6.89 0.44 3.63 0.00 6.90 16 12 C 0.07 2.28 5.54 71.98 0.40 2.68 16 13 O -0.58 -16.82 12.94 -148.98 -1.93 -18.75 16 14 C -0.13 -4.97 4.89 30.67 0.15 -4.82 16 15 C 0.18 9.13 5.00 86.36 0.43 9.56 16 16 N -0.60 -31.51 2.98 -699.09 -2.09 -33.60 16 17 C -0.27 -15.05 9.57 84.03 0.80 -14.25 16 18 H 0.06 3.54 7.87 -2.91 -0.02 3.52 16 19 C -0.05 -2.59 4.94 84.86 0.42 -2.17 16 20 N -0.93 -55.66 11.25 21.65 0.24 -55.42 16 21 Si 0.97 45.45 29.58 68.60 2.03 47.48 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 C 0.15 7.07 6.26 86.36 0.54 7.61 16 26 C -0.13 -4.98 4.74 30.67 0.15 -4.83 16 27 C -0.13 -3.52 9.34 22.61 0.21 -3.31 16 28 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.10 0.61 8.10 -2.39 -0.02 0.59 16 30 H 0.08 0.80 8.10 -2.38 -0.02 0.78 16 31 H 0.18 1.69 8.06 -2.92 -0.02 1.66 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.11 1.19 8.08 -2.39 -0.02 1.17 16 35 H 0.41 16.57 6.47 -92.71 -0.60 15.97 16 36 H 0.06 1.93 6.17 -2.39 -0.01 1.92 16 37 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.39 7.38 9.12 -74.06 -0.68 6.70 16 39 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.07 2.72 7.80 -2.39 -0.02 2.71 16 41 H 0.00 -0.11 6.84 -2.39 -0.02 -0.13 16 42 H 0.06 3.13 6.17 -2.39 -0.01 3.12 16 43 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 44 H 0.00 -0.06 7.74 -2.39 -0.02 -0.08 16 45 H 0.05 2.34 7.93 -2.39 -0.02 2.32 16 46 H 0.08 2.91 6.40 -2.39 -0.02 2.89 16 47 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 48 H 0.15 3.71 7.64 -2.91 -0.02 3.69 16 Total: -1.00 -73.39 380.76 0.47 -72.91 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.28 Total: 34.62 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 5.84 Total: 19.59 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -5.13 Total: -134.16 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.97 Total: -40.44 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.39 0.47 -72.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505383735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.705 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds