Wall clock time and date at job start Tue Mar 31 2020 18:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40193 * 120.37175 * 2 1 4 4 C 1.35352 * 119.94996 * 179.76925 * 3 2 1 5 5 N 1.35770 * 120.69950 * 0.51192 * 4 3 2 6 6 C 1.46501 * 119.62262 * 179.76071 * 5 4 3 7 7 C 1.50702 * 109.47087 * 269.72931 * 6 5 4 8 8 O 1.21276 * 120.00179 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99804 * 180.02562 * 7 6 5 10 10 C 1.47420 * 125.64821 * 5.05054 * 9 7 6 11 11 C 1.54914 * 104.83054 * 204.09509 * 10 9 7 12 12 C 1.55402 * 101.66640 * 323.07589 * 11 10 9 13 13 C 1.47023 * 125.64546 * 185.01059 * 9 7 6 14 14 H 1.08996 * 109.88307 * 59.40395 * 13 9 7 15 15 C 1.52999 * 109.88016 * 298.39212 * 13 9 7 16 16 N 1.46507 * 109.47070 * 174.23598 * 15 13 9 17 17 C 1.46504 * 119.99476 * 275.48534 * 16 15 13 18 18 C 1.36927 * 120.00485 * 95.48095 * 16 15 13 19 19 H 1.08004 * 119.99951 * 6.99229 * 18 16 15 20 20 C 1.38814 * 120.00278 * 186.71423 * 18 16 15 21 21 N 1.31620 * 119.99470 * 355.00707 * 20 18 16 22 22 Si 1.86799 * 120.00309 * 175.00811 * 20 18 16 23 23 H 1.48498 * 109.47246 * 89.99839 * 22 20 18 24 24 H 1.48500 * 109.47246 * 210.00035 * 22 20 18 25 25 H 1.48503 * 109.46789 * 329.99692 * 22 20 18 26 26 C 1.34654 * 120.75128 * 359.48659 * 5 4 3 27 27 O 1.22060 * 119.98594 * 180.27926 * 26 5 4 28 28 C 1.36403 * 120.36449 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46944 * 269.98326 * 1 2 3 30 30 H 1.08998 * 109.46619 * 29.97678 * 1 2 3 31 31 H 1.08996 * 109.47323 * 149.97523 * 1 2 3 32 32 H 1.07996 * 120.02472 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.65293 * 180.27489 * 4 3 2 34 34 H 1.09002 * 109.46978 * 149.72362 * 6 5 4 35 35 H 1.09002 * 109.46963 * 29.72468 * 6 5 4 36 36 H 1.08996 * 110.36897 * 322.93208 * 10 9 7 37 37 H 1.09000 * 110.36715 * 85.14730 * 10 9 7 38 38 H 1.08997 * 111.00246 * 81.06277 * 11 10 9 39 39 H 1.09001 * 111.00586 * 204.91601 * 11 10 9 40 40 H 1.09001 * 110.69217 * 277.04874 * 12 11 10 41 41 H 1.08993 * 110.85509 * 153.70002 * 12 11 10 42 42 H 1.08994 * 109.47834 * 54.23341 * 15 13 9 43 43 H 1.09004 * 109.46921 * 294.22639 * 15 13 9 44 44 H 1.08999 * 109.46860 * 235.92147 * 17 16 15 45 45 H 1.09004 * 109.47197 * 355.91970 * 17 16 15 46 46 H 1.09004 * 109.46764 * 115.91971 * 17 16 15 47 47 H 0.97006 * 119.99256 * 179.97438 * 21 20 18 48 48 H 1.07997 * 120.35156 * 359.94988 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5693 1.1996 0.0047 5 7 4.2538 0.0271 -0.0009 6 6 5.7188 0.0439 -0.0010 7 6 6.2210 0.0497 -1.4218 8 8 5.4330 0.0403 -2.3436 9 7 7.5461 0.0644 -1.6681 10 6 8.6099 -0.0295 -0.6518 11 6 9.8455 0.6351 -1.3087 12 6 9.6990 0.1789 -2.7870 13 6 8.1698 0.1760 -2.9947 14 1 7.8590 1.1045 -3.4736 15 6 7.7647 -1.0176 -3.8621 16 7 8.2768 -0.8293 -5.2218 17 6 7.5144 -0.0346 -6.1880 18 6 9.4679 -1.3958 -5.5895 19 1 9.9742 -2.0727 -4.9172 20 6 10.0217 -1.1048 -6.8286 21 7 9.3565 -0.3635 -7.6890 22 14 11.7111 -1.7652 -7.2750 23 1 11.5676 -3.0912 -7.9279 24 1 12.3799 -0.8236 -8.2085 25 1 12.5289 -1.9057 -6.0434 26 6 3.6017 -1.1510 -0.0010 27 8 4.2311 -2.1967 -0.0010 28 6 2.1965 -1.1769 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6823 2.1485 0.0004 33 1 4.1105 2.1342 0.0092 34 1 6.0923 -0.8419 0.5129 35 1 6.0719 0.9380 0.5129 36 1 8.3224 0.5117 0.2495 37 1 8.8187 -1.0731 -0.4165 38 1 9.7931 1.7209 -1.2300 39 1 10.7704 0.2575 -0.8725 40 1 10.1087 -0.8219 -2.9237 41 1 10.1784 0.8883 -3.4614 42 1 6.6778 -1.0939 -3.8905 43 1 8.1823 -1.9317 -3.4401 44 1 7.3192 -0.6337 -7.0775 45 1 6.5683 0.2710 -5.7411 46 1 8.0883 0.8499 -6.4643 47 1 9.7437 -0.1598 -8.5548 48 1 1.6682 -2.1189 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505448090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:03 Heat of formation + Delta-G solvation = 5.467309 kcal Electronic energy + Delta-G solvation = -29437.214417 eV Core-core repulsion = 25494.142337 eV Total energy + Delta-G solvation = -3943.072081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.58260 -39.79829 -37.38527 -37.09157 -35.34565 -35.26955 -31.90528 -31.34728 -30.49990 -29.57579 -28.92102 -26.97257 -25.86596 -25.14780 -23.84386 -22.97174 -21.73425 -21.22628 -20.32920 -18.88083 -17.68802 -17.57788 -17.16383 -16.84695 -16.17476 -16.01058 -15.41284 -14.86176 -14.69007 -14.47038 -14.31607 -14.14811 -13.65451 -13.59184 -13.27213 -13.08718 -12.95139 -12.80010 -12.68997 -12.45401 -12.24594 -12.04332 -11.92806 -11.79025 -11.73183 -11.12250 -10.99204 -10.88801 -10.73378 -10.42786 -10.31300 -10.22233 -10.08274 -10.00825 -9.78943 -9.72232 -9.41279 -8.59188 -8.36934 -8.07259 -6.81912 -5.57736 -3.00360 0.69360 1.78027 2.34555 2.66420 3.12473 3.40886 3.46197 3.47850 3.59703 4.31407 4.39170 4.41969 4.54394 4.55113 4.71305 4.79888 4.90866 5.03444 5.05415 5.14638 5.18450 5.27492 5.35934 5.45709 5.47909 5.58304 5.64470 5.70514 5.79183 5.80952 5.91597 5.95756 6.04800 6.21895 6.32557 6.34635 6.39717 6.58141 6.68664 6.83194 6.95030 6.95634 7.03983 7.68261 7.73563 7.78715 7.98424 8.01807 8.25926 8.44739 9.33445 9.96962 10.42207 11.41360 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002883 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.248764 B = 9708.488333 C =10465.447139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.231 4.231 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.075 3.925 7 C 0.512 3.488 8 O -0.521 6.521 9 N -0.608 5.608 10 C 0.096 3.904 11 C -0.137 4.137 12 C -0.106 4.106 13 C 0.116 3.884 14 H 0.069 0.931 15 C 0.148 3.852 16 N -0.606 5.606 17 C 0.171 3.829 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.917 5.917 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.522 3.478 27 O -0.549 6.549 28 C -0.247 4.247 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.160 0.840 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.044 0.956 45 H -0.008 1.008 46 H 0.038 0.962 47 H 0.248 0.752 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 7.457 21.689 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.254 4.254 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.051 4.051 7 C 0.297 3.703 8 O -0.396 6.396 9 N -0.344 5.344 10 C -0.027 4.027 11 C -0.175 4.175 12 C -0.145 4.145 13 C 0.011 3.989 14 H 0.087 0.913 15 C 0.019 3.981 16 N -0.329 5.329 17 C 0.027 3.973 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.324 3.676 27 O -0.432 6.432 28 C -0.268 4.268 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.010 0.990 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.664 6.800 20.988 24.504 hybrid contribution 1.080 -0.157 -0.375 1.154 sum -9.584 6.643 20.613 23.683 Atomic orbital electron populations 1.20917 0.90425 1.03619 1.02902 1.20187 0.96720 0.92680 0.89403 1.20491 0.92319 0.98878 1.13735 1.21868 0.93611 0.89471 0.93132 1.45055 1.07248 1.07297 1.59562 1.21796 0.79548 1.06805 0.96928 1.20152 0.81607 0.77758 0.90746 1.90773 1.54259 1.49032 1.45533 1.48711 1.04162 1.71923 1.09596 1.22380 0.88101 1.00953 0.91269 1.22869 0.96897 1.00416 0.97318 1.22572 0.94480 1.03303 0.94100 1.22756 0.92565 1.02087 0.81455 0.91336 1.21071 0.97757 0.93881 0.85378 1.44004 1.22978 1.60024 1.05897 1.21015 0.89911 0.95436 0.90937 1.19292 0.96629 1.20726 1.00236 0.90986 1.24879 0.98549 0.99880 0.96939 1.70250 1.36429 1.42340 1.07502 0.86227 0.84277 0.77969 0.77941 1.21705 1.21729 1.20723 1.17083 0.89351 0.82443 0.78687 1.90965 1.69122 1.30241 1.52827 1.21915 0.92259 0.99549 1.13120 0.90231 0.90776 0.90813 0.83801 0.82296 0.85556 0.86479 0.91279 0.91090 0.91105 0.90157 0.90114 0.89911 0.93137 0.93755 0.93775 0.98952 0.94348 0.94058 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.03 36.00 0.36 -0.41 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.95 9.71 -39.88 -0.39 -2.34 16 4 C 0.15 1.34 10.28 -16.84 -0.17 1.17 16 5 N -0.48 -5.99 2.07 -121.06 -0.25 -6.24 16 6 C 0.07 0.84 4.75 -5.19 -0.02 0.82 16 7 C 0.51 8.15 7.73 -10.98 -0.08 8.06 16 8 O -0.52 -10.73 15.21 5.56 0.08 -10.65 16 9 N -0.61 -9.24 3.06 -163.02 -0.50 -9.74 16 10 C 0.10 1.05 6.74 -2.53 -0.02 1.03 16 11 C -0.14 -1.55 7.09 -24.45 -0.17 -1.72 16 12 C -0.11 -1.75 5.80 -24.76 -0.14 -1.89 16 13 C 0.12 2.17 3.13 -66.95 -0.21 1.96 16 14 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 15 C 0.15 3.36 5.09 -4.04 -0.02 3.34 16 16 N -0.61 -15.94 2.83 -181.11 -0.51 -16.45 16 17 C 0.17 4.61 9.00 59.85 0.54 5.15 16 18 C -0.24 -6.59 8.90 -15.06 -0.13 -6.73 16 19 H 0.07 1.92 7.64 -52.48 -0.40 1.51 16 20 C -0.01 -0.18 5.46 -17.43 -0.10 -0.28 16 21 N -0.92 -27.13 9.45 55.49 0.52 -26.60 16 22 Si 0.91 22.06 29.56 -169.99 -5.02 17.03 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.52 8.03 7.40 -15.45 -0.11 7.91 16 27 O -0.55 -10.53 16.64 4.86 0.08 -10.45 16 28 C -0.25 -3.10 9.65 -39.38 -0.38 -3.48 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.16 0.91 8.03 -52.49 -0.42 0.49 16 34 H 0.13 1.42 7.39 -51.93 -0.38 1.03 16 35 H 0.12 0.77 7.82 -51.93 -0.41 0.36 16 36 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.44 7.31 -51.93 -0.38 1.06 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.05 1.25 6.40 -51.93 -0.33 0.92 16 43 H 0.04 1.01 7.82 -51.93 -0.41 0.60 16 44 H 0.04 1.28 7.05 -51.93 -0.37 0.92 16 45 H -0.01 -0.21 7.84 -51.93 -0.41 -0.61 16 46 H 0.04 1.08 7.04 -51.93 -0.37 0.72 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -37.21 388.07 -9.04 -46.25 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.61 Total: -1.11 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -1.67 Total: 12.11 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.74 Total: -59.04 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.17 Total: -21.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.21 -9.04 -46.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505448090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.718 kcal (2) G-P(sol) polarization free energy of solvation -37.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds