Wall clock time and date at job start Tue Mar 31 2020 18:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40193 * 120.37175 * 2 1 4 4 C 1.35352 * 119.94996 * 179.76925 * 3 2 1 5 5 N 1.35770 * 120.69950 * 0.51192 * 4 3 2 6 6 C 1.46501 * 119.62262 * 179.76071 * 5 4 3 7 7 C 1.50702 * 109.47087 * 269.72931 * 6 5 4 8 8 O 1.21276 * 120.00179 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99804 * 180.02562 * 7 6 5 10 10 C 1.47420 * 125.64821 * 5.05054 * 9 7 6 11 11 C 1.54914 * 104.83054 * 204.09509 * 10 9 7 12 12 C 1.55402 * 101.66640 * 323.07589 * 11 10 9 13 13 C 1.47023 * 125.64546 * 185.01059 * 9 7 6 14 14 H 1.08996 * 109.88307 * 59.40395 * 13 9 7 15 15 C 1.52999 * 109.88016 * 298.39212 * 13 9 7 16 16 N 1.46507 * 109.47070 * 174.23598 * 15 13 9 17 17 C 1.46504 * 119.99476 * 275.48534 * 16 15 13 18 18 C 1.36927 * 120.00485 * 95.48095 * 16 15 13 19 19 H 1.08004 * 119.99951 * 6.99229 * 18 16 15 20 20 C 1.38814 * 120.00278 * 186.71423 * 18 16 15 21 21 N 1.31620 * 119.99470 * 355.00707 * 20 18 16 22 22 Si 1.86799 * 120.00309 * 175.00811 * 20 18 16 23 23 H 1.48498 * 109.47246 * 89.99839 * 22 20 18 24 24 H 1.48500 * 109.47246 * 210.00035 * 22 20 18 25 25 H 1.48503 * 109.46789 * 329.99692 * 22 20 18 26 26 C 1.34654 * 120.75128 * 359.48659 * 5 4 3 27 27 O 1.22060 * 119.98594 * 180.27926 * 26 5 4 28 28 C 1.36403 * 120.36449 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46944 * 269.98326 * 1 2 3 30 30 H 1.08998 * 109.46619 * 29.97678 * 1 2 3 31 31 H 1.08996 * 109.47323 * 149.97523 * 1 2 3 32 32 H 1.07996 * 120.02472 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.65293 * 180.27489 * 4 3 2 34 34 H 1.09002 * 109.46978 * 149.72362 * 6 5 4 35 35 H 1.09002 * 109.46963 * 29.72468 * 6 5 4 36 36 H 1.08996 * 110.36897 * 322.93208 * 10 9 7 37 37 H 1.09000 * 110.36715 * 85.14730 * 10 9 7 38 38 H 1.08997 * 111.00246 * 81.06277 * 11 10 9 39 39 H 1.09001 * 111.00586 * 204.91601 * 11 10 9 40 40 H 1.09001 * 110.69217 * 277.04874 * 12 11 10 41 41 H 1.08993 * 110.85509 * 153.70002 * 12 11 10 42 42 H 1.08994 * 109.47834 * 54.23341 * 15 13 9 43 43 H 1.09004 * 109.46921 * 294.22639 * 15 13 9 44 44 H 1.08999 * 109.46860 * 235.92147 * 17 16 15 45 45 H 1.09004 * 109.47197 * 355.91970 * 17 16 15 46 46 H 1.09004 * 109.46764 * 115.91971 * 17 16 15 47 47 H 0.97006 * 119.99256 * 179.97438 * 21 20 18 48 48 H 1.07997 * 120.35156 * 359.94988 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5693 1.1996 0.0047 5 7 4.2538 0.0271 -0.0009 6 6 5.7188 0.0439 -0.0010 7 6 6.2210 0.0497 -1.4218 8 8 5.4330 0.0403 -2.3436 9 7 7.5461 0.0644 -1.6681 10 6 8.6099 -0.0295 -0.6518 11 6 9.8455 0.6351 -1.3087 12 6 9.6990 0.1789 -2.7870 13 6 8.1698 0.1760 -2.9947 14 1 7.8590 1.1045 -3.4736 15 6 7.7647 -1.0176 -3.8621 16 7 8.2768 -0.8293 -5.2218 17 6 7.5144 -0.0346 -6.1880 18 6 9.4679 -1.3958 -5.5895 19 1 9.9742 -2.0727 -4.9172 20 6 10.0217 -1.1048 -6.8286 21 7 9.3565 -0.3635 -7.6890 22 14 11.7111 -1.7652 -7.2750 23 1 11.5676 -3.0912 -7.9279 24 1 12.3799 -0.8236 -8.2085 25 1 12.5289 -1.9057 -6.0434 26 6 3.6017 -1.1510 -0.0010 27 8 4.2311 -2.1967 -0.0010 28 6 2.1965 -1.1769 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6823 2.1485 0.0004 33 1 4.1105 2.1342 0.0092 34 1 6.0923 -0.8419 0.5129 35 1 6.0719 0.9380 0.5129 36 1 8.3224 0.5117 0.2495 37 1 8.8187 -1.0731 -0.4165 38 1 9.7931 1.7209 -1.2300 39 1 10.7704 0.2575 -0.8725 40 1 10.1087 -0.8219 -2.9237 41 1 10.1784 0.8883 -3.4614 42 1 6.6778 -1.0939 -3.8905 43 1 8.1823 -1.9317 -3.4401 44 1 7.3192 -0.6337 -7.0775 45 1 6.5683 0.2710 -5.7411 46 1 8.0883 0.8499 -6.4643 47 1 9.7437 -0.1598 -8.5548 48 1 1.6682 -2.1189 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505448090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:02 Heat of formation + Delta-G solvation = -18.945612 kcal Electronic energy + Delta-G solvation = -29438.273041 eV Core-core repulsion = 25494.142337 eV Total energy + Delta-G solvation = -3944.130704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.53689 -41.04510 -38.74833 -38.10260 -37.22049 -36.21797 -33.61639 -32.78959 -31.35893 -30.72780 -30.19531 -28.13053 -27.77971 -26.78954 -24.65858 -24.29717 -22.93369 -22.61799 -21.68924 -20.18906 -18.96925 -18.55218 -18.53334 -18.24148 -17.45411 -17.01213 -16.75268 -16.44674 -15.98361 -15.66648 -15.39759 -15.17100 -15.14562 -14.99265 -14.61759 -14.23526 -14.16839 -13.95035 -13.77539 -13.55264 -13.45448 -13.33965 -13.05168 -12.93012 -12.83806 -12.71271 -12.68611 -12.46797 -12.34073 -12.08663 -12.04173 -11.90709 -11.60284 -11.51911 -11.18560 -11.09173 -10.68180 -10.54950 -9.81225 -8.98757 -8.93824 -7.75503 -5.21491 -0.12229 0.92008 1.40536 1.45977 1.47800 1.48611 1.56675 2.01665 2.50561 2.67087 3.31476 3.38337 3.61692 3.62935 3.72551 3.79992 3.84674 3.90948 4.03813 4.07581 4.14691 4.30838 4.33823 4.39687 4.45073 4.48010 4.67842 4.72305 4.78439 4.83409 4.84772 4.90032 4.93881 5.08935 5.09723 5.10762 5.17936 5.24236 5.40708 5.43927 5.45956 5.48753 5.57701 5.66667 5.74339 6.05549 6.25305 6.49995 6.95602 7.04604 7.13495 7.82980 8.27054 9.24011 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002883 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.248764 B = 9708.488333 C =10465.447139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.231 4.231 4 C 0.139 3.861 5 N -0.484 5.484 6 C 0.083 3.917 7 C 0.504 3.496 8 O -0.579 6.579 9 N -0.608 5.608 10 C 0.091 3.909 11 C -0.119 4.119 12 C -0.106 4.106 13 C 0.128 3.872 14 H 0.043 0.957 15 C 0.154 3.846 16 N -0.621 5.621 17 C 0.195 3.805 18 C -0.244 4.244 19 H 0.080 0.920 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.975 3.025 23 H -0.292 1.292 24 H -0.294 1.294 25 H -0.262 1.262 26 C 0.502 3.498 27 O -0.612 6.612 28 C -0.294 4.294 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.184 0.816 33 H 0.203 0.797 34 H 0.127 0.873 35 H 0.179 0.821 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.015 0.985 45 H -0.001 1.001 46 H 0.021 0.979 47 H 0.244 0.756 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 9.774 25.017 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.253 4.253 4 C 0.014 3.986 5 N -0.193 5.193 6 C -0.042 4.042 7 C 0.292 3.708 8 O -0.459 6.459 9 N -0.342 5.342 10 C -0.030 4.030 11 C -0.157 4.157 12 C -0.144 4.144 13 C 0.022 3.978 14 H 0.061 0.939 15 C 0.027 3.973 16 N -0.345 5.345 17 C 0.050 3.950 18 C -0.373 4.373 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.600 5.600 22 Si 0.803 3.197 23 H -0.219 1.219 24 H -0.220 1.220 25 H -0.187 1.187 26 C 0.307 3.693 27 O -0.500 6.500 28 C -0.315 4.315 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.201 0.799 33 H 0.220 0.780 34 H 0.145 0.855 35 H 0.196 0.804 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.017 0.983 46 H 0.039 0.961 47 H 0.054 0.946 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.036 9.150 24.402 27.927 hybrid contribution 0.732 -0.823 -1.399 1.780 sum -9.304 8.328 23.003 26.173 Atomic orbital electron populations 1.21036 0.87924 1.04461 1.04443 1.20653 0.98574 0.92081 0.85809 1.21065 0.92426 0.99806 1.11961 1.22708 0.94467 0.89650 0.91812 1.45103 1.07938 1.07538 1.58735 1.21979 0.79002 1.09708 0.93510 1.21095 0.81204 0.76162 0.92309 1.90747 1.55782 1.51546 1.47784 1.48733 1.05080 1.71294 1.09092 1.22747 0.86359 1.02237 0.91646 1.22865 0.98418 1.01569 0.92832 1.22434 0.91970 1.02057 0.97988 1.22152 0.94504 0.98192 0.82913 0.93908 1.21032 0.95780 0.95755 0.84768 1.44167 1.22890 1.60105 1.07330 1.20619 0.89952 0.94248 0.90193 1.19594 0.96722 1.20638 1.00385 0.90224 1.25717 1.02304 1.00679 0.96924 1.70445 1.37962 1.43893 1.07654 0.85133 0.79772 0.76760 0.77991 1.21891 1.22006 1.18692 1.17533 0.90356 0.82700 0.78700 1.90902 1.70271 1.32306 1.56534 1.21895 0.91558 1.00840 1.17208 0.88092 0.88776 0.91133 0.79891 0.78027 0.85470 0.80385 0.86078 0.90616 0.89385 0.87400 0.91821 0.91851 0.95970 0.94182 0.96618 0.98251 0.96067 0.94593 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.03 71.24 0.71 -0.53 16 2 C 0.03 0.58 5.89 -19.82 -0.12 0.46 16 3 C -0.23 -3.10 9.71 22.08 0.21 -2.89 16 4 C 0.14 2.10 10.28 83.42 0.86 2.96 16 5 N -0.48 -11.40 2.07 -655.05 -1.36 -12.75 16 6 C 0.08 1.65 4.75 85.63 0.41 2.06 16 7 C 0.50 15.68 7.73 87.66 0.68 16.36 16 8 O -0.58 -24.63 15.21 -3.02 -0.05 -24.68 16 9 N -0.61 -17.68 3.06 -788.06 -2.42 -20.09 16 10 C 0.09 1.63 6.74 86.86 0.59 2.21 16 11 C -0.12 -2.25 7.09 32.07 0.23 -2.02 16 12 C -0.11 -3.42 5.80 31.87 0.18 -3.24 16 13 C 0.13 4.86 3.13 45.34 0.14 5.00 16 14 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.15 7.34 5.09 86.38 0.44 7.78 16 16 N -0.62 -34.11 2.83 -726.91 -2.06 -36.17 16 17 C 0.19 11.08 9.00 127.77 1.15 12.23 16 18 C -0.24 -13.77 8.90 84.04 0.75 -13.02 16 19 H 0.08 4.28 7.64 -2.91 -0.02 4.26 16 20 C -0.06 -3.66 5.46 84.86 0.46 -3.20 16 21 N -0.95 -58.12 9.45 21.65 0.20 -57.91 16 22 Si 0.98 45.90 29.56 68.60 2.03 47.93 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.50 16.02 7.40 84.82 0.63 16.65 16 27 O -0.61 -25.12 16.64 -5.51 -0.09 -25.21 16 28 C -0.29 -7.68 9.65 22.40 0.22 -7.46 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 32 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.20 1.20 8.03 -2.91 -0.02 1.18 16 34 H 0.13 2.62 7.39 -2.39 -0.02 2.60 16 35 H 0.18 1.28 7.82 -2.39 -0.02 1.26 16 36 H 0.12 1.00 7.48 -2.39 -0.02 0.99 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 2.26 7.31 -2.39 -0.02 2.24 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.02 1.17 6.40 -2.39 -0.02 1.15 16 43 H 0.04 1.90 7.82 -2.38 -0.02 1.88 16 44 H 0.02 0.95 7.05 -2.39 -0.02 0.93 16 45 H 0.00 -0.06 7.84 -2.38 -0.02 -0.08 16 46 H 0.02 1.26 7.04 -2.38 -0.02 1.24 16 47 H 0.24 14.52 8.31 -92.70 -0.77 13.75 16 48 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -90.92 388.07 4.74 -86.18 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.94 Total: 9.38 kcal Atomic # 6 Polarization: 25.81 SS G_CDS: 7.54 Total: 33.35 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.63 Total: -126.94 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.14 Total: -49.89 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -90.92 4.74 -86.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505448090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.232 kcal (2) G-P(sol) polarization free energy of solvation -90.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds