Wall clock time and date at job start Tue Mar 31 2020 17:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38087 * 119.58385 * 2 1 4 4 C 1.38785 * 119.28373 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.75468 * 179.97438 * 4 3 2 6 6 C 1.38416 * 118.48884 * 0.02562 * 4 3 2 7 7 C 1.50701 * 120.44820 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47173 * 89.99457 * 7 6 4 9 9 O 1.21282 * 120.00105 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99977 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99796 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47218 * 325.00119 * 11 10 8 13 13 C 1.53004 * 109.46854 * 85.00032 * 11 10 8 14 14 C 1.52999 * 109.47049 * 204.99893 * 11 10 8 15 15 C 1.53946 * 113.84014 * 81.35341 * 14 11 10 16 16 N 1.47580 * 86.11645 * 90.74977 * 15 14 11 17 17 C 1.36940 * 134.49194 * 204.64076 * 16 15 14 18 18 H 1.08004 * 119.99910 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00130 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00040 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47395 * 89.99952 * 21 19 17 23 23 H 1.48496 * 109.47269 * 210.00118 * 21 19 17 24 24 H 1.48507 * 109.47337 * 329.99895 * 21 19 17 25 25 C 1.47585 * 91.01539 * 24.64210 * 16 15 14 26 26 C 1.38875 * 119.11371 * 0.24632 * 6 4 3 27 27 O 1.35681 * 119.68664 * 179.72600 * 26 6 4 28 28 N 1.31939 * 119.57836 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.46895 * 90.00100 * 1 2 3 30 30 H 1.08998 * 109.47798 * 209.99871 * 1 2 3 31 31 H 1.09002 * 109.46906 * 330.00633 * 1 2 3 32 32 H 1.07996 * 120.36252 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.46702 * 270.02077 * 5 4 3 34 34 H 1.08997 * 109.47243 * 30.02615 * 5 4 3 35 35 H 1.09004 * 109.47042 * 150.02261 * 5 4 3 36 36 H 1.09001 * 109.46986 * 330.00179 * 7 6 4 37 37 H 1.08995 * 109.47244 * 209.99796 * 7 6 4 38 38 H 0.96992 * 120.00070 * 0.02562 * 10 8 7 39 39 H 1.08991 * 109.47224 * 60.00057 * 13 11 10 40 40 H 1.09004 * 109.46507 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.47253 * 299.99596 * 13 11 10 42 42 H 1.09002 * 112.94549 * 309.66800 * 14 11 10 43 43 H 1.08996 * 113.77105 * 205.05389 * 15 14 11 44 44 H 1.09002 * 113.76556 * 336.45321 * 15 14 11 45 45 H 0.96992 * 119.99795 * 179.97438 * 20 19 17 46 46 H 1.08996 * 113.76681 * 221.05446 * 25 16 15 47 47 H 1.08997 * 113.86988 * 89.67359 * 25 16 15 48 48 H 0.96698 * 113.99631 * 90.00621 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2008 0.0000 4 6 3.5766 1.1936 0.0005 5 6 4.3540 2.4846 0.0000 6 6 4.2304 -0.0264 0.0005 7 6 5.7363 -0.0858 0.0005 8 6 6.2382 -0.1055 1.4213 9 8 5.4507 -0.0748 2.3432 10 7 7.5623 -0.1572 1.6676 11 6 8.0502 -0.1769 3.0488 12 1 7.4011 0.4379 3.6723 13 6 8.0457 -1.6152 3.5708 14 6 9.4755 0.3776 3.0942 15 6 9.5449 1.9155 3.0999 16 7 9.5141 1.8114 4.5717 17 6 9.1262 2.6468 5.5850 18 1 9.2066 2.3233 6.6123 19 6 8.6296 3.9095 5.2918 20 7 8.5312 4.3036 4.0398 21 14 8.0998 5.0488 6.6740 22 1 9.2558 5.8755 7.1047 23 1 7.0089 5.9349 6.1944 24 1 7.6134 4.2418 7.8218 25 6 10.0694 0.4452 4.5129 26 6 3.4802 -1.1951 -0.0053 27 8 4.1092 -2.3973 -0.0110 28 7 2.1583 -1.1475 0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6479 2.1356 -0.0004 33 1 4.5415 2.7953 -1.0279 34 1 3.7790 3.2552 0.5135 35 1 5.3039 2.3370 0.5139 36 1 6.1344 0.7892 -0.5133 37 1 6.0642 -0.9894 -0.5133 38 1 8.1921 -0.1814 0.9304 39 1 8.6948 -2.2300 2.9474 40 1 8.4083 -1.6297 4.5986 41 1 7.0303 -2.0102 3.5385 42 1 10.1364 -0.0888 2.3636 43 1 10.4801 2.3145 2.7071 44 1 8.6639 2.3966 2.6750 45 1 8.1839 5.1857 3.8350 46 1 9.6072 -0.2475 5.2162 47 1 11.1586 0.4104 4.5353 48 1 4.2912 -2.7501 0.8708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506645485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:49 Heat of formation + Delta-G solvation = 2.563380 kcal Electronic energy + Delta-G solvation = -29295.143849 eV Core-core repulsion = 25351.945844 eV Total energy + Delta-G solvation = -3943.198005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93694 -39.53364 -38.08036 -37.31335 -34.94742 -34.44960 -32.22371 -31.97728 -30.90292 -29.60541 -27.76490 -27.56467 -26.06552 -24.77090 -23.82556 -22.83637 -21.79812 -20.94448 -20.08360 -18.71935 -18.37522 -17.29884 -16.80238 -16.72181 -16.23779 -15.66092 -15.26388 -14.86426 -14.78094 -14.28861 -14.03779 -13.84173 -13.58825 -13.41538 -13.16971 -13.13822 -13.01437 -12.83001 -12.54674 -12.40985 -12.20669 -11.98503 -11.87440 -11.79313 -11.60162 -11.51695 -11.29876 -10.93900 -10.82649 -10.65258 -10.32483 -9.92011 -9.75745 -9.67109 -9.48374 -9.43627 -9.33608 -8.82482 -8.69217 -8.65445 -6.85606 -5.74945 -3.06498 0.92304 1.15939 2.87645 3.25026 3.40332 3.45546 3.47175 3.49800 3.78929 4.37967 4.47886 4.53241 4.76235 4.79523 4.97486 5.12850 5.19446 5.24703 5.27342 5.29608 5.33961 5.35943 5.41661 5.50966 5.54283 5.56179 5.67789 5.74486 5.79964 5.88941 5.96745 6.02915 6.04876 6.08516 6.25067 6.27299 6.44378 6.48876 6.53026 6.65751 6.73031 6.88731 7.20583 7.33559 7.40412 7.58286 7.79330 7.89416 8.00549 8.50074 9.06827 9.73357 10.61859 11.42074 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.003349 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.907998 B = 8358.422541 C = 9736.310170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.148 3.852 3 C -0.183 4.183 4 C -0.007 4.007 5 C -0.122 4.122 6 C -0.132 4.132 7 C -0.099 4.099 8 C 0.515 3.485 9 O -0.535 6.535 10 N -0.718 5.718 11 C 0.168 3.832 12 H 0.101 0.899 13 C -0.157 4.157 14 C -0.149 4.149 15 C 0.167 3.833 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.125 3.875 26 C 0.329 3.671 27 O -0.483 6.483 28 N -0.509 5.509 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.396 0.604 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.074 0.926 45 H 0.252 0.748 46 H 0.046 0.954 47 H 0.035 0.965 48 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -9.861 -12.606 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.203 4.203 4 C -0.015 4.015 5 C -0.178 4.178 6 C -0.135 4.135 7 C -0.140 4.140 8 C 0.300 3.700 9 O -0.411 6.411 10 N -0.368 5.368 11 C 0.065 3.935 12 H 0.119 0.881 13 C -0.215 4.215 14 C -0.169 4.169 15 C 0.042 3.958 16 N -0.336 5.336 17 C -0.350 4.350 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.001 4.001 26 C 0.150 3.850 27 O -0.291 6.291 28 N -0.229 5.229 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.229 0.771 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.260 -10.294 -12.370 18.567 hybrid contribution 0.848 1.382 0.896 1.852 sum -8.412 -8.912 -11.474 16.788 Atomic orbital electron populations 1.20721 0.88652 1.03592 1.03013 1.20931 0.96623 0.87227 0.94169 1.21801 0.93978 0.99345 1.05166 1.20113 0.93697 0.94997 0.92685 1.20903 1.00787 0.93388 1.02749 1.20100 0.95518 0.92773 1.05154 1.20556 0.91868 1.05705 0.95828 1.20346 0.82629 0.76359 0.90643 1.90734 1.55244 1.49008 1.46119 1.46041 1.06571 1.74816 1.09364 1.20652 0.95045 0.96060 0.81781 0.88120 1.22132 1.01358 0.96559 1.01496 1.23459 0.94578 1.00264 0.98618 1.22262 0.99468 0.88648 0.85439 1.45993 1.72349 1.12771 1.02503 1.19014 1.34769 0.94591 0.86582 0.90379 1.24738 1.01801 0.97328 0.96432 1.69806 1.51329 1.19571 1.16058 0.86165 0.77919 0.80821 0.81154 1.21708 1.21662 1.20615 1.22583 0.95806 0.88724 0.92990 1.18783 0.86601 0.84798 0.94836 1.84670 1.76597 1.33595 1.34206 1.66953 1.09504 1.30711 1.15728 0.90403 0.90458 0.90501 0.84515 0.90232 0.90485 0.90347 0.87626 0.87356 0.77083 0.93091 0.91445 0.92883 0.91800 0.95790 0.90764 0.93806 0.93559 0.94764 0.74100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.01 0.37 -0.53 16 2 C 0.15 1.85 6.78 -82.60 -0.56 1.29 16 3 C -0.18 -2.18 9.44 -39.43 -0.37 -2.55 16 4 C -0.01 -0.10 5.91 -104.35 -0.62 -0.71 16 5 C -0.12 -1.41 9.28 36.01 0.33 -1.07 16 6 C -0.13 -1.78 4.40 -104.32 -0.46 -2.24 16 7 C -0.10 -1.14 4.96 -29.03 -0.14 -1.29 16 8 C 0.51 7.70 7.48 -10.98 -0.08 7.62 16 9 O -0.53 -10.40 15.70 5.56 0.09 -10.31 16 10 N -0.72 -9.96 5.08 -53.80 -0.27 -10.23 16 11 C 0.17 2.83 2.34 -67.93 -0.16 2.67 16 12 H 0.10 2.24 7.43 -51.93 -0.39 1.86 16 13 C -0.16 -2.26 9.31 37.16 0.35 -1.91 16 14 C -0.15 -2.58 3.53 -89.69 -0.32 -2.90 16 15 C 0.17 3.78 7.06 -2.97 -0.02 3.75 16 16 N -0.61 -15.34 3.56 -177.91 -0.63 -15.97 16 17 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 18 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -27.13 11.38 55.49 0.63 -26.50 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.13 2.46 8.30 -2.97 -0.02 2.44 16 26 C 0.33 4.68 7.72 -17.12 -0.13 4.55 16 27 O -0.48 -6.03 12.62 -18.75 -0.24 -6.27 16 28 N -0.51 -7.45 10.30 -9.55 -0.10 -7.55 16 29 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.53 8.08 -51.93 -0.42 0.12 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.08 1.05 6.55 -51.93 -0.34 0.71 16 36 H 0.11 1.03 6.81 -51.93 -0.35 0.68 16 37 H 0.11 1.04 7.54 -51.93 -0.39 0.65 16 38 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.98 6.59 -51.93 -0.34 0.64 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.88 7.11 -51.93 -0.37 1.51 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.05 0.87 6.56 -51.93 -0.34 0.53 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.40 3.82 9.06 45.56 0.41 4.24 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -35.77 394.16 -8.36 -44.13 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.65 Total: 6.90 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.10 Total: 2.43 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.37 Total: -60.25 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.15 Total: -16.58 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.77 -8.36 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506645485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.689 kcal (2) G-P(sol) polarization free energy of solvation -35.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds