Wall clock time and date at job start Tue Mar 31 2020 17:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38351 * 119.40329 * 2 1 4 4 C 1.38340 * 119.45938 * 179.76180 * 3 2 1 5 5 C 1.50701 * 120.82999 * 180.23346 * 4 3 2 6 6 C 1.39988 * 118.34475 * 0.47928 * 4 3 2 7 7 C 1.47529 * 120.59458 * 179.75219 * 6 4 3 8 8 O 1.21582 * 120.00242 * 269.72140 * 7 6 4 9 9 N 1.34774 * 119.99609 * 89.72719 * 7 6 4 10 10 C 1.46503 * 119.99837 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.01605 * 34.93465 * 10 9 7 12 12 C 1.54266 * 110.03191 * 273.54606 * 10 9 7 13 13 C 1.54894 * 104.31305 * 216.98645 * 12 10 9 14 14 C 1.55238 * 102.58338 * 37.93170 * 13 12 10 15 15 H 1.09006 * 110.46947 * 80.77225 * 14 13 12 16 16 C 1.53002 * 110.58012 * 203.33342 * 14 13 12 17 17 N 1.46497 * 109.47575 * 289.87827 * 16 14 13 18 18 C 1.36935 * 119.99973 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00254 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99617 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00390 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46808 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.46986 * 119.99761 * 22 20 18 25 25 H 1.48497 * 109.47195 * 239.99853 * 22 20 18 26 26 C 1.53869 * 110.07664 * 156.35104 * 10 9 7 27 27 C 1.40272 * 118.80625 * 359.48410 * 6 4 3 28 28 O 1.35432 * 119.80223 * 180.27366 * 27 6 4 29 29 N 1.31876 * 119.40882 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47410 * 270.01657 * 1 2 3 31 31 H 1.08995 * 109.47453 * 30.02333 * 1 2 3 32 32 H 1.09012 * 109.46661 * 150.02534 * 1 2 3 33 33 H 1.08001 * 120.27361 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47464 * 270.25206 * 5 4 3 35 35 H 1.09002 * 109.47019 * 30.25064 * 5 4 3 36 36 H 1.08998 * 109.47342 * 150.24836 * 5 4 3 37 37 H 0.96996 * 120.00556 * 359.97438 * 9 7 6 38 38 H 1.09002 * 110.48629 * 335.73398 * 12 10 9 39 39 H 1.08998 * 110.48744 * 98.24302 * 12 10 9 40 40 H 1.08996 * 110.75388 * 156.31523 * 13 12 10 41 41 H 1.08993 * 110.76071 * 279.69749 * 13 12 10 42 42 H 1.09008 * 109.46743 * 49.87819 * 16 14 13 43 43 H 1.09000 * 109.47095 * 169.86908 * 16 14 13 44 44 H 0.97001 * 119.99472 * 359.97438 * 17 16 14 45 45 H 0.96996 * 120.00483 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.04012 * 238.59262 * 26 10 9 47 47 H 1.09006 * 110.02998 * 359.97438 * 26 10 9 48 48 H 0.96699 * 114.00096 * 89.99689 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2053 0.0000 4 6 3.5696 1.2067 0.0050 5 6 4.3407 2.5015 0.0104 6 6 4.2355 -0.0247 -0.0004 7 6 5.7097 -0.0812 -0.0009 8 8 6.3168 -0.1050 -1.0540 9 7 6.3834 -0.1064 1.1661 10 6 7.8474 -0.1630 1.1656 11 1 8.2426 0.4081 0.3255 12 6 8.3195 -1.6289 1.0769 13 6 9.5762 -1.6819 1.9809 14 6 9.1855 -0.7485 3.1581 15 1 8.5550 -1.2787 3.8720 16 6 10.4364 -0.2047 3.8513 17 7 11.1022 -1.2884 4.5781 18 6 12.2515 -1.0377 5.2792 19 1 12.6673 -0.0412 5.2959 20 6 12.8820 -2.0646 5.9683 21 7 12.3755 -3.2793 5.9476 22 14 14.4502 -1.7229 6.9241 23 1 14.8096 -0.2884 6.7888 24 1 14.2365 -2.0460 8.3576 25 1 15.5506 -2.5624 6.3862 26 6 8.3980 0.3969 2.4889 27 6 3.4758 -1.2039 0.0005 28 8 4.0992 -2.4062 0.0010 29 7 2.1546 -1.1488 0.0005 30 1 -0.3634 0.0003 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8903 -0.5135 33 1 1.6410 2.1376 0.0004 34 1 4.5264 2.8181 -1.0159 35 1 3.7620 3.2668 0.5276 36 1 5.2913 2.3562 0.5235 37 1 5.8992 -0.0870 2.0063 38 1 7.5492 -2.3013 1.4546 39 1 8.5777 -1.8850 0.0493 40 1 9.7559 -2.6976 2.3332 41 1 10.4479 -1.2947 1.4536 42 1 11.1172 0.2036 3.1042 43 1 10.1516 0.5809 4.5511 44 1 10.7288 -2.1836 4.5628 45 1 12.8158 -3.9967 6.4294 46 1 9.0604 1.2396 2.2910 47 1 7.5760 0.7114 3.1320 48 1 4.2806 -2.7549 0.8845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507411369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:49 Heat of formation + Delta-G solvation = -75.692194 kcal Electronic energy + Delta-G solvation = -28225.975894 eV Core-core repulsion = 24279.384473 eV Total energy + Delta-G solvation = -3946.591421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.08778 -40.66474 -39.12484 -38.46555 -36.47810 -35.35119 -34.70420 -33.00744 -32.70626 -30.20033 -29.87573 -28.78042 -28.23589 -26.19084 -24.54105 -23.91036 -23.01161 -21.72630 -21.42234 -20.98692 -19.55441 -19.10719 -18.86808 -18.24089 -17.61615 -16.83219 -16.66317 -16.22839 -15.84129 -15.66887 -15.28631 -15.20859 -15.04506 -14.83802 -14.54020 -14.41728 -14.22957 -14.00991 -13.92371 -13.58037 -13.25050 -13.16354 -13.00327 -12.93087 -12.83152 -12.81463 -12.63078 -12.43056 -12.12716 -12.08321 -11.81911 -11.63271 -11.54775 -11.49980 -11.35407 -10.91261 -10.63133 -10.51638 -10.17306 -9.86934 -8.96991 -7.94535 -5.22426 -0.30667 0.02577 1.37338 1.47386 1.48067 1.58125 2.01303 2.35068 2.52700 2.56513 3.39044 3.39966 3.53246 3.54614 3.57934 3.71471 3.88697 3.97787 4.17113 4.20072 4.28040 4.41729 4.48942 4.49935 4.51908 4.58401 4.60927 4.65050 4.67892 4.78089 4.81197 4.85448 4.95547 5.01548 5.05712 5.06744 5.12463 5.15519 5.19001 5.22822 5.37174 5.47859 5.50991 5.52163 5.57221 6.28519 6.37076 6.44756 6.80006 7.07444 7.34704 8.12767 8.35098 9.29282 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024280 B = 0.002022 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.915509 B =13847.724749 C =14073.468379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.176 4.176 4 C 0.008 3.992 5 C -0.123 4.123 6 C -0.222 4.222 7 C 0.582 3.418 8 O -0.571 6.571 9 N -0.698 5.698 10 C 0.149 3.851 11 H 0.081 0.919 12 C -0.124 4.124 13 C -0.109 4.109 14 C -0.088 4.088 15 H 0.073 0.927 16 C 0.157 3.843 17 N -0.745 5.745 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.295 1.295 26 C -0.108 4.108 27 C 0.340 3.660 28 O -0.492 6.492 29 N -0.533 5.533 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.184 0.816 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.018 0.982 43 H 0.023 0.977 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.084 13.275 -11.201 32.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.023 3.977 3 C -0.196 4.196 4 C 0.001 3.999 5 C -0.179 4.179 6 C -0.229 4.229 7 C 0.367 3.633 8 O -0.450 6.450 9 N -0.349 5.349 10 C 0.044 3.956 11 H 0.099 0.901 12 C -0.163 4.163 13 C -0.147 4.147 14 C -0.107 4.107 15 H 0.092 0.908 16 C 0.031 3.969 17 N -0.387 5.387 18 C -0.374 4.374 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.146 4.146 27 C 0.161 3.839 28 O -0.302 6.302 29 N -0.254 5.254 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.201 0.799 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.041 0.959 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.103 0.897 47 H 0.113 0.887 48 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -26.932 12.644 -12.471 32.260 hybrid contribution 1.545 -0.439 1.278 2.053 sum -25.387 12.206 -11.192 30.311 Atomic orbital electron populations 1.20937 0.85698 1.04887 1.04759 1.21880 0.98644 0.86826 0.90365 1.22180 0.93001 1.00750 1.03645 1.20598 0.94620 0.93964 0.90764 1.21010 1.00009 0.92857 1.04052 1.20805 0.93871 0.95127 1.13119 1.17992 0.86556 0.74828 0.83900 1.90800 1.70257 1.50958 1.32967 1.46121 1.07078 1.73516 1.08206 1.21566 0.78749 0.96274 0.98982 0.90070 1.22681 0.97565 0.96554 0.99470 1.22440 0.97173 0.99398 0.95700 1.22083 0.95697 0.96471 0.96414 0.90839 1.20883 0.92238 0.90532 0.93241 1.42578 1.28223 1.08569 1.59339 1.19690 1.00942 0.94928 1.21877 0.90675 1.25567 1.02854 0.95562 1.03072 1.69818 1.42667 1.01040 1.48569 0.85082 0.79302 0.77681 0.77762 1.19009 1.22012 1.22216 1.22313 1.00228 0.97678 0.94368 1.19147 0.86802 0.84524 0.93450 1.84720 1.76794 1.33052 1.35641 1.67110 1.08949 1.32125 1.17240 0.88325 0.87464 0.90973 0.79919 0.89738 0.87001 0.91544 0.74903 0.90691 0.92376 0.92884 0.92217 0.96362 0.95934 0.79423 0.94076 0.89719 0.88731 0.71978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 71.24 0.72 0.00 16 2 C 0.16 2.28 6.78 42.58 0.29 2.56 16 3 C -0.18 -1.89 9.41 22.32 0.21 -1.68 16 4 C 0.01 0.12 5.95 -19.42 -0.12 0.01 16 5 C -0.12 -1.29 9.69 71.24 0.69 -0.60 16 6 C -0.22 -4.61 5.66 -19.91 -0.11 -4.73 16 7 C 0.58 13.97 5.41 86.69 0.47 14.44 16 8 O -0.57 -19.05 16.78 -3.97 -0.07 -19.12 16 9 N -0.70 -12.98 5.05 -442.28 -2.23 -15.21 16 10 C 0.15 3.28 3.22 45.71 0.15 3.42 16 11 H 0.08 2.03 7.60 -2.39 -0.02 2.01 16 12 C -0.12 -3.16 6.51 31.67 0.21 -2.95 16 13 C -0.11 -3.30 6.23 32.01 0.20 -3.11 16 14 C -0.09 -2.55 2.88 -9.60 -0.03 -2.58 16 15 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 16 C 0.16 6.01 5.55 86.38 0.48 6.49 16 17 N -0.74 -37.47 5.49 -343.45 -1.89 -39.35 16 18 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 20 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 21 N -0.97 -59.60 13.06 21.65 0.28 -59.31 16 22 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 26 C -0.11 -2.24 6.14 31.32 0.19 -2.04 16 27 C 0.34 7.64 7.77 85.13 0.66 8.30 16 28 O -0.49 -11.10 13.01 -87.28 -1.14 -12.23 16 29 N -0.53 -11.27 10.28 -296.06 -3.04 -14.32 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.16 8.07 -2.39 -0.02 0.14 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 33 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.11 0.47 8.10 -2.39 -0.02 0.45 16 36 H 0.07 0.83 7.19 -2.39 -0.02 0.81 16 37 H 0.41 5.45 8.28 -92.71 -0.77 4.68 16 38 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.92 7.98 -2.39 -0.02 1.90 16 42 H 0.02 0.72 8.03 -2.38 -0.02 0.70 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.37 20.02 7.64 -92.71 -0.71 19.32 16 45 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.08 1.72 7.84 -2.39 -0.02 1.70 16 47 H 0.09 1.51 7.61 -2.38 -0.02 1.50 16 48 H 0.42 5.44 9.06 -74.06 -0.67 4.77 16 Total: -1.00 -79.57 398.05 -1.88 -81.46 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -1.15 Total: 29.01 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.32 Total: 0.76 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -6.88 Total: -128.20 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.20 Total: -31.35 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -79.57 -1.88 -81.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507411369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.767 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds