Wall clock time and date at job start Tue Mar 31 2020 17:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38354 * 119.40701 * 2 1 4 4 C 1.38336 * 119.46008 * 179.72353 * 3 2 1 5 5 C 1.50705 * 120.82788 * 180.25955 * 4 3 2 6 6 C 1.39995 * 118.34767 * 0.50185 * 4 3 2 7 7 C 1.47524 * 120.59687 * 179.77501 * 6 4 3 8 8 O 1.21585 * 120.00293 * 269.72468 * 7 6 4 9 9 N 1.34783 * 119.99619 * 89.72565 * 7 6 4 10 10 C 1.46496 * 119.99709 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.02111 * 326.38949 * 10 9 7 12 12 C 1.53882 * 110.07309 * 87.81040 * 10 9 7 13 13 C 1.54267 * 106.59905 * 119.30308 * 12 10 9 14 14 C 1.54889 * 104.19467 * 23.60979 * 13 12 10 15 15 H 1.08999 * 110.91491 * 80.44193 * 14 13 12 16 16 C 1.53001 * 110.75493 * 203.73936 * 14 13 12 17 17 N 1.46490 * 109.47264 * 288.32759 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.54271 * 110.02885 * 204.99850 * 10 9 7 27 27 C 1.40278 * 118.80475 * 359.50892 * 6 4 3 28 28 O 1.35423 * 119.80115 * 180.27523 * 27 6 4 29 29 N 1.31878 * 119.40770 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46755 * 270.01381 * 1 2 3 31 31 H 1.09001 * 109.47476 * 30.01115 * 1 2 3 32 32 H 1.08999 * 109.47629 * 150.01890 * 1 2 3 33 33 H 1.07996 * 120.27088 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.46755 * 270.24831 * 5 4 3 35 35 H 1.08997 * 109.46947 * 30.25116 * 5 4 3 36 36 H 1.08996 * 109.46715 * 150.25410 * 5 4 3 37 37 H 0.97005 * 119.99773 * 359.97438 * 9 7 6 38 38 H 1.09004 * 110.02606 * 238.58771 * 12 10 9 39 39 H 1.09002 * 110.03061 * 359.96704 * 12 10 9 40 40 H 1.08991 * 110.48623 * 264.93368 * 13 12 10 41 41 H 1.09000 * 110.48373 * 142.28652 * 13 12 10 42 42 H 1.09003 * 109.46836 * 168.32466 * 16 14 13 43 43 H 1.08999 * 109.47071 * 48.33505 * 16 14 13 44 44 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 45 45 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 46 46 H 1.08998 * 110.48457 * 98.37987 * 26 10 9 47 47 H 1.08997 * 110.48626 * 335.73699 * 26 10 9 48 48 H 0.96702 * 114.00127 * 89.99635 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2066 0.0058 5 6 4.3407 2.5014 0.0118 6 6 4.2355 -0.0249 0.0007 7 6 5.7097 -0.0814 0.0016 8 8 6.3178 -0.1049 -1.0510 9 7 6.3824 -0.1069 1.1693 10 6 7.8462 -0.1635 1.1701 11 1 8.1977 -0.7448 0.3177 12 6 8.4299 1.2592 1.1145 13 6 9.2677 1.4423 2.3969 14 6 9.6372 -0.0016 2.8185 15 1 10.4815 -0.3727 2.2375 16 6 9.9416 -0.0679 4.3164 17 7 11.2238 0.5882 4.5837 18 6 11.7061 0.6531 5.8636 19 1 11.1415 0.2201 6.6761 20 6 12.9209 1.2753 6.1170 21 7 13.6089 1.8034 5.1269 22 14 13.5791 1.3630 7.8630 23 1 13.0901 2.6048 8.5144 24 1 13.1068 0.1826 8.6301 25 1 15.0638 1.3719 7.8324 26 6 8.3498 -0.7954 2.4843 27 6 3.4758 -1.2041 0.0006 28 8 4.0991 -2.4063 0.0013 29 7 2.1545 -1.1489 0.0005 30 1 -0.3633 0.0002 1.0277 31 1 -0.3634 0.8899 -0.5140 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6410 2.1375 0.0004 34 1 4.5271 2.8180 -1.0144 35 1 3.7617 3.2666 0.5288 36 1 5.2910 2.3559 0.5254 37 1 5.8972 -0.0877 2.0090 38 1 9.0646 1.3682 0.2350 39 1 7.6239 1.9926 1.0863 40 1 8.6758 1.9267 3.1733 41 1 10.1675 2.0200 2.1854 42 1 9.9944 -1.1103 4.6307 43 1 9.1516 0.4389 4.8705 44 1 11.7309 0.9775 3.8541 45 1 13.2672 1.7575 4.2203 46 1 8.5797 -1.8506 2.3367 47 1 7.6096 -0.6722 3.2749 48 1 4.2796 -2.7552 0.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507411370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:53 Heat of formation + Delta-G solvation = -47.523662 kcal Electronic energy + Delta-G solvation = -28280.582494 eV Core-core repulsion = 24335.212552 eV Total energy + Delta-G solvation = -3945.369942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38753 -39.78872 -38.06094 -37.78726 -35.06683 -34.68517 -33.55899 -32.23997 -31.10721 -29.10298 -28.80558 -28.10608 -27.30795 -24.30751 -23.76566 -22.44080 -22.35684 -21.04413 -20.47060 -19.58253 -18.87284 -18.09288 -17.59328 -17.22423 -16.63121 -16.08894 -15.59763 -15.30361 -14.80956 -14.65751 -14.38146 -14.01661 -13.79784 -13.74073 -13.52451 -13.47132 -13.38270 -13.28245 -13.16241 -12.87291 -12.45949 -12.33070 -12.27358 -12.07834 -11.76021 -11.72314 -10.98073 -10.78628 -10.68441 -10.55584 -10.50768 -10.37422 -10.28009 -10.01918 -10.00073 -9.80125 -9.28532 -9.24230 -9.16036 -8.87397 -6.99359 -6.10451 -3.09680 0.32041 0.62755 2.26064 2.77192 2.98979 3.14748 3.50775 3.55851 3.69961 3.98738 4.04517 4.31353 4.50509 4.58261 4.62762 4.70211 4.71670 4.83230 4.90565 4.94634 5.07271 5.09553 5.12054 5.33909 5.36279 5.45902 5.47684 5.52773 5.54742 5.57266 5.63345 5.66562 5.73406 5.80593 5.94526 5.97946 6.02708 6.06652 6.19346 6.32634 6.44333 6.46598 6.69945 6.81835 6.98182 7.20177 7.40249 7.80877 7.91151 8.76220 9.24064 10.10394 10.25649 11.38318 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022571 B = 0.002032 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.226313 B =13773.953463 C =13803.403528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.187 4.187 4 C 0.013 3.987 5 C -0.126 4.126 6 C -0.204 4.204 7 C 0.575 3.425 8 O -0.522 6.522 9 N -0.715 5.715 10 C 0.140 3.860 11 H 0.092 0.908 12 C -0.133 4.133 13 C -0.112 4.112 14 C -0.098 4.098 15 H 0.078 0.922 16 C 0.168 3.832 17 N -0.743 5.743 18 C -0.331 4.331 19 H 0.064 0.936 20 C -0.047 4.047 21 N -0.945 5.945 22 Si 1.083 2.917 23 H -0.296 1.296 24 H -0.295 1.295 25 H -0.288 1.288 26 C -0.120 4.120 27 C 0.355 3.645 28 O -0.473 6.473 29 N -0.506 5.506 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.419 -1.674 -10.308 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.206 4.206 4 C 0.005 3.995 5 C -0.182 4.182 6 C -0.211 4.211 7 C 0.359 3.641 8 O -0.397 6.397 9 N -0.366 5.366 10 C 0.036 3.964 11 H 0.111 0.889 12 C -0.172 4.172 13 C -0.149 4.149 14 C -0.117 4.117 15 H 0.097 0.903 16 C 0.040 3.960 17 N -0.389 5.389 18 C -0.462 4.462 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.590 5.590 22 Si 0.914 3.086 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.214 1.214 26 C -0.158 4.158 27 C 0.176 3.824 28 O -0.280 6.280 29 N -0.226 5.226 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -26.255 -2.028 -10.539 28.364 hybrid contribution -0.890 0.115 -0.297 0.945 sum -27.145 -1.913 -10.836 29.291 Atomic orbital electron populations 1.20815 0.88020 1.04035 1.03629 1.21203 0.97059 0.87018 0.91589 1.21803 0.93611 0.99717 1.05510 1.20288 0.93713 0.94176 0.91329 1.20970 1.00212 0.93069 1.03957 1.20855 0.94982 0.94160 1.11057 1.17783 0.85924 0.76068 0.84331 1.90831 1.69098 1.48469 1.31297 1.46271 1.07704 1.74671 1.07958 1.21778 0.77892 0.97169 0.99557 0.88941 1.22595 0.99608 0.95783 0.99193 1.22349 0.99605 0.97023 0.95968 1.22292 0.96374 0.94864 0.98141 0.90347 1.20558 0.88936 0.95568 0.90910 1.42353 1.20571 1.69092 1.06837 1.20058 1.05333 1.35319 0.85509 0.91829 1.25782 0.94133 0.98301 1.06228 1.70850 1.40359 1.47823 0.99997 0.83191 0.76199 0.75515 0.73696 1.22349 1.22191 1.21374 1.22620 0.98007 0.99782 0.95436 1.18987 0.86373 0.84405 0.92665 1.84767 1.76624 1.32656 1.33964 1.67059 1.09066 1.30460 1.16064 0.89755 0.90112 0.90038 0.83677 0.89460 0.89947 0.90592 0.76607 0.91211 0.91791 0.91478 0.91269 0.96415 0.96341 0.79992 0.93382 0.90840 0.90903 0.73730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.16 36.00 0.37 -0.14 16 2 C 0.17 1.36 6.78 -82.53 -0.56 0.80 16 3 C -0.19 -1.31 9.41 -39.50 -0.37 -1.68 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -0.89 9.69 36.01 0.35 -0.54 16 6 C -0.20 -2.17 5.66 -104.69 -0.59 -2.76 16 7 C 0.57 6.97 5.42 -12.47 -0.07 6.90 16 8 O -0.52 -8.54 16.76 5.29 0.09 -8.45 16 9 N -0.71 -7.06 4.98 -53.76 -0.27 -7.32 16 10 C 0.14 1.61 3.24 -66.81 -0.22 1.39 16 11 H 0.09 1.20 7.56 -51.93 -0.39 0.81 16 12 C -0.13 -1.63 6.59 -25.61 -0.17 -1.80 16 13 C -0.11 -1.61 6.20 -25.07 -0.16 -1.76 16 14 C -0.10 -1.48 2.91 -88.62 -0.26 -1.74 16 15 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 16 C 0.17 3.29 5.70 -4.05 -0.02 3.26 16 17 N -0.74 -18.61 5.52 -59.91 -0.33 -18.94 16 18 C -0.33 -9.39 9.99 -15.06 -0.15 -9.54 16 19 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 21 N -0.94 -29.31 13.70 55.49 0.76 -28.55 16 22 Si 1.08 26.01 29.92 -169.99 -5.09 20.92 16 23 H -0.30 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C -0.12 -1.38 5.97 -25.07 -0.15 -1.53 16 27 C 0.36 3.90 7.77 -16.61 -0.13 3.77 16 28 O -0.47 -4.89 13.01 -17.96 -0.23 -5.13 16 29 N -0.51 -5.37 10.28 -9.21 -0.09 -5.47 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 36 H 0.08 0.61 7.19 -51.93 -0.37 0.24 16 37 H 0.40 3.03 8.34 -40.82 -0.34 2.69 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 40 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.37 7.99 -51.93 -0.41 -0.05 16 44 H 0.37 9.39 6.50 -40.82 -0.27 9.12 16 45 H 0.25 7.78 6.77 -40.82 -0.28 7.50 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.76 7.64 -51.93 -0.40 0.36 16 48 H 0.40 2.15 9.06 45.56 0.41 2.56 16 LS Contribution 396.54 15.07 5.98 5.98 Total: -1.00 -37.08 396.54 -8.75 -45.83 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.72 Total: 8.48 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.84 Total: -7.35 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.07 Total: -60.29 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.15 Total: -13.58 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.09 Total: 20.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.08 -8.75 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507411370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.695 kcal (2) G-P(sol) polarization free energy of solvation -37.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds