Wall clock time and date at job start Tue Mar 31 2020 17:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38354 * 119.40701 * 2 1 4 4 C 1.38336 * 119.46008 * 179.72353 * 3 2 1 5 5 C 1.50705 * 120.82788 * 180.25955 * 4 3 2 6 6 C 1.39995 * 118.34767 * 0.50185 * 4 3 2 7 7 C 1.47524 * 120.59687 * 179.77501 * 6 4 3 8 8 O 1.21585 * 120.00293 * 269.72468 * 7 6 4 9 9 N 1.34783 * 119.99619 * 89.72565 * 7 6 4 10 10 C 1.46496 * 119.99709 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.02111 * 326.38949 * 10 9 7 12 12 C 1.53882 * 110.07309 * 87.81040 * 10 9 7 13 13 C 1.54267 * 106.59905 * 119.30308 * 12 10 9 14 14 C 1.54889 * 104.19467 * 23.60979 * 13 12 10 15 15 H 1.08999 * 110.91491 * 80.44193 * 14 13 12 16 16 C 1.53001 * 110.75493 * 203.73936 * 14 13 12 17 17 N 1.46490 * 109.47264 * 288.32759 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.54271 * 110.02885 * 204.99850 * 10 9 7 27 27 C 1.40278 * 118.80475 * 359.50892 * 6 4 3 28 28 O 1.35423 * 119.80115 * 180.27523 * 27 6 4 29 29 N 1.31878 * 119.40770 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46755 * 270.01381 * 1 2 3 31 31 H 1.09001 * 109.47476 * 30.01115 * 1 2 3 32 32 H 1.08999 * 109.47629 * 150.01890 * 1 2 3 33 33 H 1.07996 * 120.27088 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.46755 * 270.24831 * 5 4 3 35 35 H 1.08997 * 109.46947 * 30.25116 * 5 4 3 36 36 H 1.08996 * 109.46715 * 150.25410 * 5 4 3 37 37 H 0.97005 * 119.99773 * 359.97438 * 9 7 6 38 38 H 1.09004 * 110.02606 * 238.58771 * 12 10 9 39 39 H 1.09002 * 110.03061 * 359.96704 * 12 10 9 40 40 H 1.08991 * 110.48623 * 264.93368 * 13 12 10 41 41 H 1.09000 * 110.48373 * 142.28652 * 13 12 10 42 42 H 1.09003 * 109.46836 * 168.32466 * 16 14 13 43 43 H 1.08999 * 109.47071 * 48.33505 * 16 14 13 44 44 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 45 45 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 46 46 H 1.08998 * 110.48457 * 98.37987 * 26 10 9 47 47 H 1.08997 * 110.48626 * 335.73699 * 26 10 9 48 48 H 0.96702 * 114.00127 * 89.99635 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2066 0.0058 5 6 4.3407 2.5014 0.0118 6 6 4.2355 -0.0249 0.0007 7 6 5.7097 -0.0814 0.0016 8 8 6.3178 -0.1049 -1.0510 9 7 6.3824 -0.1069 1.1693 10 6 7.8462 -0.1635 1.1701 11 1 8.1977 -0.7448 0.3177 12 6 8.4299 1.2592 1.1145 13 6 9.2677 1.4423 2.3969 14 6 9.6372 -0.0016 2.8185 15 1 10.4815 -0.3727 2.2375 16 6 9.9416 -0.0679 4.3164 17 7 11.2238 0.5882 4.5837 18 6 11.7061 0.6531 5.8636 19 1 11.1415 0.2201 6.6761 20 6 12.9209 1.2753 6.1170 21 7 13.6089 1.8034 5.1269 22 14 13.5791 1.3630 7.8630 23 1 13.0901 2.6048 8.5144 24 1 13.1068 0.1826 8.6301 25 1 15.0638 1.3719 7.8324 26 6 8.3498 -0.7954 2.4843 27 6 3.4758 -1.2041 0.0006 28 8 4.0991 -2.4063 0.0013 29 7 2.1545 -1.1489 0.0005 30 1 -0.3633 0.0002 1.0277 31 1 -0.3634 0.8899 -0.5140 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6410 2.1375 0.0004 34 1 4.5271 2.8180 -1.0144 35 1 3.7617 3.2666 0.5288 36 1 5.2910 2.3559 0.5254 37 1 5.8972 -0.0877 2.0090 38 1 9.0646 1.3682 0.2350 39 1 7.6239 1.9926 1.0863 40 1 8.6758 1.9267 3.1733 41 1 10.1675 2.0200 2.1854 42 1 9.9944 -1.1103 4.6307 43 1 9.1516 0.4389 4.8705 44 1 11.7309 0.9775 3.8541 45 1 13.2672 1.7575 4.2203 46 1 8.5797 -1.8506 2.3367 47 1 7.6096 -0.6722 3.2749 48 1 4.2796 -2.7552 0.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507411370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:52 Heat of formation + Delta-G solvation = -76.694216 kcal Electronic energy + Delta-G solvation = -28281.847424 eV Core-core repulsion = 24335.212552 eV Total energy + Delta-G solvation = -3946.634872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12223 -40.72174 -39.21055 -38.48673 -36.77823 -35.39073 -34.84180 -33.00662 -32.69514 -30.14023 -29.88814 -28.82018 -28.23814 -26.01754 -24.59239 -24.19682 -23.07226 -21.86268 -21.52651 -20.78724 -19.57635 -19.34930 -18.88903 -18.27362 -17.67549 -16.94685 -16.78462 -16.53460 -15.85330 -15.75766 -15.42724 -15.18307 -15.05454 -14.88668 -14.86448 -14.33880 -14.24796 -14.08821 -13.96582 -13.65779 -13.27917 -13.04788 -13.02505 -12.83788 -12.82659 -12.67749 -12.65174 -12.60350 -12.09593 -11.88509 -11.83150 -11.72596 -11.55415 -11.42563 -11.20425 -10.91340 -10.66115 -10.55526 -10.22798 -9.89253 -9.09681 -8.40033 -5.33334 -0.33255 -0.00253 1.33456 1.58279 1.69240 1.83389 1.95720 2.32787 2.49929 2.71623 3.35406 3.39247 3.46164 3.49166 3.51516 3.64574 3.80737 3.94969 3.98736 4.16262 4.23741 4.32412 4.40278 4.43535 4.47330 4.49988 4.54194 4.56310 4.61050 4.66701 4.79875 4.82474 4.91829 4.92726 4.98908 5.01176 5.05223 5.11091 5.12243 5.17022 5.26259 5.42130 5.47174 5.49451 5.59118 6.33259 6.43121 6.49509 6.77297 7.02985 7.10341 8.01382 8.12161 9.12155 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022571 B = 0.002032 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.226313 B =13773.953463 C =13803.403528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.162 3.838 3 C -0.177 4.177 4 C 0.008 3.992 5 C -0.125 4.125 6 C -0.223 4.223 7 C 0.582 3.418 8 O -0.571 6.571 9 N -0.698 5.698 10 C 0.148 3.852 11 H 0.079 0.921 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.093 4.093 15 H 0.066 0.934 16 C 0.167 3.833 17 N -0.757 5.757 18 C -0.334 4.334 19 H 0.067 0.933 20 C -0.108 4.108 21 N -0.976 5.976 22 Si 1.131 2.869 23 H -0.284 1.284 24 H -0.273 1.273 25 H -0.294 1.294 26 C -0.105 4.105 27 C 0.342 3.658 28 O -0.491 6.491 29 N -0.531 5.531 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.182 0.818 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.414 0.586 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.018 0.982 43 H 0.024 0.976 44 H 0.360 0.640 45 H 0.244 0.756 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.143 -1.198 -9.287 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.196 4.196 4 C 0.000 4.000 5 C -0.181 4.181 6 C -0.230 4.230 7 C 0.368 3.632 8 O -0.449 6.449 9 N -0.349 5.349 10 C 0.043 3.957 11 H 0.097 0.903 12 C -0.163 4.163 13 C -0.144 4.144 14 C -0.112 4.112 15 H 0.085 0.915 16 C 0.040 3.960 17 N -0.402 5.402 18 C -0.465 4.465 19 H 0.085 0.915 20 C -0.299 4.299 21 N -0.624 5.624 22 Si 0.956 3.044 23 H -0.210 1.210 24 H -0.198 1.198 25 H -0.220 1.220 26 C -0.144 4.144 27 C 0.163 3.837 28 O -0.301 6.301 29 N -0.252 5.252 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.199 0.801 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.192 0.808 45 H 0.054 0.946 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -29.043 -1.581 -9.482 30.592 hybrid contribution -0.155 -0.051 -0.624 0.645 sum -29.198 -1.632 -10.106 30.940 Atomic orbital electron populations 1.20937 0.85630 1.04923 1.04792 1.21870 0.98655 0.86762 0.90257 1.22173 0.92944 1.00833 1.03690 1.20567 0.94652 0.93900 0.90854 1.21015 0.99951 0.93103 1.04008 1.20787 0.93798 0.95149 1.13234 1.18001 0.86594 0.74803 0.83847 1.90804 1.70234 1.50892 1.33015 1.46078 1.06982 1.73584 1.08254 1.21552 0.78751 0.96348 0.99008 0.90279 1.22498 0.99466 0.96638 0.97665 1.22254 0.99014 0.96182 0.96948 1.22163 0.97861 0.96189 0.94996 0.91520 1.20729 0.86631 0.94715 0.93878 1.42597 1.22333 1.69493 1.05732 1.20430 1.05204 1.33982 0.86888 0.91526 1.27250 0.95017 0.98388 1.09218 1.70965 1.41342 1.50091 1.00024 0.82581 0.75206 0.76760 0.69886 1.21039 1.19783 1.22048 1.22511 0.96348 0.99709 0.95803 1.19111 0.86765 0.84480 0.93334 1.84715 1.76768 1.32882 1.35729 1.67120 1.08899 1.31993 1.17218 0.88284 0.87557 0.90821 0.80063 0.89735 0.87126 0.91814 0.74901 0.91851 0.90706 0.91534 0.93391 0.96440 0.95828 0.80799 0.94602 0.89730 0.88969 0.71832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.16 71.23 0.72 0.03 16 2 C 0.16 2.25 6.78 42.58 0.29 2.54 16 3 C -0.18 -1.96 9.41 22.32 0.21 -1.75 16 4 C 0.01 0.13 5.95 -19.41 -0.12 0.01 16 5 C -0.12 -1.50 9.69 71.24 0.69 -0.81 16 6 C -0.22 -4.59 5.66 -19.91 -0.11 -4.70 16 7 C 0.58 13.91 5.42 86.69 0.47 14.38 16 8 O -0.57 -18.99 16.76 -3.98 -0.07 -19.06 16 9 N -0.70 -12.97 4.98 -442.26 -2.20 -15.17 16 10 C 0.15 3.26 3.24 45.72 0.15 3.41 16 11 H 0.08 2.04 7.56 -2.39 -0.02 2.02 16 12 C -0.12 -2.98 6.59 31.32 0.21 -2.77 16 13 C -0.11 -3.04 6.20 31.67 0.20 -2.84 16 14 C -0.09 -2.77 2.91 -9.50 -0.03 -2.80 16 15 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 16 C 0.17 6.43 5.70 86.38 0.49 6.92 16 17 N -0.76 -38.28 5.52 -343.47 -1.90 -40.17 16 18 C -0.33 -18.88 9.99 84.03 0.84 -18.04 16 19 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 20 C -0.11 -6.30 5.50 84.86 0.47 -5.84 16 21 N -0.98 -61.61 13.70 21.65 0.30 -61.31 16 22 Si 1.13 52.03 29.92 68.60 2.05 54.08 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 C -0.11 -2.25 5.97 31.67 0.19 -2.07 16 27 C 0.34 7.38 7.77 85.13 0.66 8.04 16 28 O -0.49 -10.20 13.01 -87.18 -1.13 -11.34 16 29 N -0.53 -10.80 10.28 -296.06 -3.04 -13.84 16 30 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 0.16 8.07 -2.39 -0.02 0.14 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 0.68 8.10 -2.39 -0.02 0.66 16 36 H 0.06 0.93 7.19 -2.39 -0.02 0.91 16 37 H 0.41 5.45 8.34 -92.70 -0.77 4.68 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.65 7.92 -2.39 -0.02 1.63 16 40 H 0.07 1.91 7.93 -2.39 -0.02 1.89 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.02 0.90 7.99 -2.39 -0.02 0.88 16 44 H 0.36 18.97 6.50 -92.71 -0.60 18.37 16 45 H 0.24 15.34 6.77 -92.71 -0.63 14.71 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.09 1.66 7.64 -2.39 -0.02 1.64 16 48 H 0.42 4.43 9.06 -74.06 -0.67 3.75 16 Total: -1.00 -81.75 396.54 -1.57 -83.32 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.91 Total: 29.78 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.33 Total: -6.29 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.85 Total: -130.50 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.20 Total: -30.39 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Total: -81.75 -1.57 -83.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507411370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.625 kcal (2) G-P(sol) polarization free energy of solvation -81.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds