Wall clock time and date at job start Tue Mar 31 2020 17:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.45968 * 2 1 4 4 C 1.34776 * 120.00150 * 59.99725 * 3 2 1 5 5 O 1.21280 * 119.99948 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.50701 * 109.47131 * 179.97438 * 6 4 3 8 8 C 1.35451 * 126.77271 * 89.71143 * 7 6 4 9 9 C 1.41381 * 103.98725 * 179.90842 * 8 7 6 10 10 C 1.50700 * 126.80797 * 180.09272 * 9 8 7 11 11 C 1.52999 * 117.49310 * 343.92135 * 10 9 8 12 12 C 1.52994 * 117.50100 * 275.30007 * 10 9 8 13 13 N 1.30184 * 106.39068 * 0.36447 * 9 8 7 14 14 O 1.20920 * 111.60473 * 359.76309 * 13 9 8 15 15 C 1.53042 * 109.45722 * 119.97019 * 2 1 3 16 16 C 1.53163 * 109.33011 * 181.38596 * 15 2 1 17 17 N 1.46924 * 108.76980 * 305.36008 * 16 15 2 18 18 C 1.36941 * 120.63144 * 233.63227 * 17 16 15 19 19 H 1.07998 * 119.99946 * 151.80366 * 18 17 16 20 20 C 1.38812 * 119.99476 * 331.79972 * 18 17 16 21 21 N 1.31613 * 120.00175 * 343.09133 * 20 18 17 22 22 Si 1.86796 * 119.99725 * 163.09354 * 20 18 17 23 23 H 1.48504 * 109.47378 * 59.99535 * 22 20 18 24 24 H 1.48501 * 109.47325 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47215 * 299.99719 * 22 20 18 26 26 C 1.46929 * 118.73876 * 53.59898 * 17 16 15 27 27 C 1.53035 * 109.46284 * 240.02316 * 2 1 3 28 28 H 1.09001 * 109.46881 * 60.00173 * 1 2 3 29 29 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47439 * 300.00403 * 1 2 3 31 31 H 0.97003 * 119.99933 * 239.71685 * 3 2 1 32 32 H 1.08991 * 109.47363 * 300.00164 * 6 4 3 33 33 H 1.09004 * 109.47089 * 60.00735 * 6 4 3 34 34 H 1.08004 * 128.01282 * 0.02562 * 8 7 6 35 35 H 1.08997 * 115.54671 * 129.62052 * 10 9 8 36 36 H 1.08994 * 117.50311 * 359.97438 * 11 10 9 37 37 H 1.09004 * 117.49857 * 145.01872 * 11 10 9 38 38 H 1.08997 * 117.50254 * 214.97652 * 12 10 9 39 39 H 1.09004 * 117.49820 * 359.97015 * 12 10 9 40 40 H 1.08997 * 109.49714 * 301.32506 * 15 2 1 41 41 H 1.09002 * 109.49664 * 61.42003 * 15 2 1 42 42 H 1.08997 * 109.59477 * 185.57222 * 16 15 2 43 43 H 1.09003 * 109.70478 * 65.20886 * 16 15 2 44 44 H 0.96999 * 120.00005 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58547 * 186.60857 * 26 17 16 46 46 H 1.09002 * 109.58391 * 66.18859 * 26 17 16 47 47 H 1.09002 * 109.50063 * 298.58371 * 27 2 1 48 48 H 1.09002 * 109.49410 * 58.64485 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6923 2.2111 1.0108 5 8 0.9947 1.8145 1.9201 6 6 2.1948 3.6319 1.0110 7 6 1.6917 4.3424 2.2411 8 6 2.3038 4.4069 3.4477 9 6 1.4241 5.1838 4.2361 10 6 1.6122 5.5756 5.6790 11 6 2.6567 4.8055 6.4896 12 6 1.1662 4.5746 6.7468 13 7 0.4165 5.4887 3.4702 14 8 0.5473 5.0304 2.3589 15 6 2.0398 -0.7209 1.2501 16 6 3.5710 -0.6889 1.2647 17 7 4.0677 -1.2493 0.0006 18 6 4.9753 -2.2747 0.0008 19 1 5.0026 -2.9718 -0.8236 20 6 5.8603 -2.4179 1.0606 21 7 6.0654 -1.4143 1.8869 22 14 6.7601 -4.0352 1.3139 23 1 7.5837 -4.3365 0.1154 24 1 7.6403 -3.9306 2.5053 25 1 5.7720 -5.1241 1.5219 26 6 3.5714 -0.6891 -1.2638 27 6 2.0399 -0.7209 -1.2499 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.5790 1.6974 -0.7254 32 1 3.2847 3.6318 1.0114 33 1 1.8317 4.1459 0.1210 34 1 3.2466 3.9683 3.7395 35 1 1.4855 6.6356 5.8986 36 1 3.2074 4.0154 5.9794 37 1 3.2175 5.3591 7.2428 38 1 0.7464 4.9761 7.6690 39 1 0.7363 3.6329 6.4055 40 1 1.6573 -0.2208 2.1398 41 1 1.6975 -1.7557 1.2383 42 1 3.9411 -1.2849 2.0989 43 1 3.9162 0.3397 1.3690 44 1 6.6841 -1.5143 2.6273 45 1 3.9417 -1.2852 -2.0979 46 1 3.9146 0.3403 -1.3670 47 1 1.6976 -1.7558 -1.2381 48 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569573411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:59 Heat of formation + Delta-G solvation = 53.003393 kcal Electronic energy + Delta-G solvation = -29608.964095 eV Core-core repulsion = 25667.953334 eV Total energy + Delta-G solvation = -3941.010761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.93983 -41.41253 -38.93414 -38.51590 -36.12046 -34.70342 -34.00496 -33.55909 -32.38983 -31.56763 -29.28280 -28.99739 -25.90464 -25.64503 -24.00549 -23.86854 -23.11896 -22.84715 -22.01166 -20.61059 -20.14108 -18.91662 -18.74251 -18.22653 -17.77141 -16.85538 -16.80476 -16.46069 -16.05758 -15.65694 -15.48437 -15.21574 -15.03956 -14.89518 -14.78050 -14.72828 -14.17324 -14.02490 -13.36561 -13.22185 -13.14791 -13.01468 -12.93309 -12.78183 -12.56667 -12.54671 -12.48392 -12.42383 -12.24471 -12.06017 -11.94773 -11.72310 -11.38333 -11.34968 -11.27702 -10.74301 -10.64624 -10.49794 -10.25121 -9.92299 -8.62190 -7.84794 -5.29039 0.40999 1.16574 1.46650 1.49721 1.55263 1.71235 2.00703 2.43870 2.52988 2.68484 3.11150 3.30532 3.46832 3.70079 3.78884 3.82787 3.92921 4.01128 4.07839 4.09986 4.12665 4.16886 4.29247 4.38284 4.52663 4.61832 4.67623 4.71864 4.72957 4.74957 4.85034 4.90697 4.91728 4.98340 5.05081 5.08137 5.08538 5.17462 5.18658 5.25227 5.37985 5.40893 5.54080 5.66198 5.71133 5.81360 6.41748 6.70592 7.18239 7.24572 7.37508 7.91158 8.41505 9.20581 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.003337 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.662971 B = 8389.305824 C = 9932.860906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.189 3.811 3 N -0.700 5.700 4 C 0.514 3.486 5 O -0.572 6.572 6 C -0.057 4.057 7 C -0.004 4.004 8 C -0.227 4.227 9 C 0.042 3.958 10 C -0.101 4.101 11 C -0.150 4.150 12 C -0.166 4.166 13 N -0.390 5.390 14 O 0.091 5.909 15 C -0.139 4.139 16 C 0.194 3.806 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.067 0.933 20 C -0.048 4.048 21 N -0.932 5.932 22 Si 0.959 3.041 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.283 1.283 26 C 0.140 3.860 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.413 0.587 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.002 0.998 44 H 0.247 0.753 45 H 0.057 0.943 46 H 0.031 0.969 47 H 0.068 0.932 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 13.479 -1.404 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.103 3.897 3 N -0.353 5.353 4 C 0.301 3.699 5 O -0.452 6.452 6 C -0.097 4.097 7 C -0.068 4.068 8 C -0.248 4.248 9 C -0.116 4.116 10 C -0.120 4.120 11 C -0.187 4.187 12 C -0.204 4.204 13 N -0.095 5.095 14 O 0.026 5.974 15 C -0.179 4.179 16 C 0.069 3.931 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.209 1.209 26 C 0.015 3.985 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.250 0.750 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.197 0.803 35 H 0.153 0.847 36 H 0.110 0.890 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.087 0.913 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.619 13.889 -0.510 16.902 hybrid contribution 1.631 -1.327 0.394 2.139 sum -7.988 12.561 -0.117 14.887 Atomic orbital electron populations 1.22110 0.93946 1.02324 1.02522 1.20125 0.93548 0.80648 0.95332 1.45919 1.52851 1.11305 1.25197 1.20635 0.79881 0.87812 0.81573 1.90678 1.39669 1.77857 1.36953 1.20303 1.04391 0.90207 0.94792 1.23980 0.86882 0.97201 0.98736 1.22569 1.04489 1.05130 0.92612 1.23067 0.91272 0.99081 0.98136 1.20266 1.08494 0.99130 0.84099 1.23130 0.91765 1.02049 1.01766 1.23068 0.98470 0.99357 0.99487 1.73741 1.23003 1.20368 0.92438 1.84743 1.35703 1.51246 1.25702 1.22375 0.98051 0.99023 0.98492 1.20306 0.89203 0.94857 0.88777 1.44265 1.48149 1.39635 1.01102 1.19473 1.09467 1.03746 1.06498 0.91528 1.25708 0.98574 0.99981 1.00121 1.70158 1.38320 1.30690 1.18609 0.85464 0.78131 0.80506 0.77096 1.19857 1.22324 1.20922 1.21092 0.92497 0.96699 0.88205 1.22210 0.96940 1.00757 0.96397 0.90867 0.91799 0.92946 0.75020 0.83195 0.82657 0.80341 0.84704 0.88975 0.85229 0.85726 0.90533 0.92634 0.93330 0.94457 0.98039 0.94372 0.92431 0.95144 0.91349 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.40 71.98 0.60 -3.51 16 2 C 0.19 5.69 0.66 3.63 0.00 5.69 16 3 N -0.70 -18.02 4.11 -422.81 -1.74 -19.75 16 4 C 0.51 14.27 7.24 87.66 0.63 14.91 16 5 O -0.57 -21.03 12.25 -3.03 -0.04 -21.07 16 6 C -0.06 -1.09 6.27 29.10 0.18 -0.91 16 7 C 0.00 -0.10 5.98 25.04 0.15 0.05 16 8 C -0.23 -6.02 10.40 22.40 0.23 -5.79 16 9 C 0.04 1.17 6.95 43.58 0.30 1.48 16 10 C -0.10 -2.16 6.33 -11.54 -0.07 -2.23 16 11 C -0.15 -2.65 10.04 30.59 0.31 -2.34 16 12 C -0.17 -3.26 10.23 30.59 0.31 -2.95 16 13 N -0.39 -12.08 12.07 -49.54 -0.60 -12.68 16 14 O 0.09 2.66 11.20 71.67 0.80 3.46 16 15 C -0.14 -5.54 4.66 30.66 0.14 -5.40 16 16 C 0.19 9.24 5.04 86.35 0.44 9.68 16 17 N -0.61 -28.61 2.99 -699.15 -2.09 -30.70 16 18 C -0.26 -13.88 9.58 84.03 0.81 -13.08 16 19 H 0.07 3.43 7.88 -2.91 -0.02 3.40 16 20 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 21 N -0.93 -54.26 11.20 21.65 0.24 -54.02 16 22 Si 0.96 44.36 29.59 68.60 2.03 46.39 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 C 0.14 4.94 6.24 86.36 0.54 5.47 16 27 C -0.12 -3.44 4.96 30.67 0.15 -3.29 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.05 1.69 6.17 -2.39 -0.01 1.67 16 31 H 0.41 8.30 7.26 -92.71 -0.67 7.62 16 32 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.16 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.18 4.27 7.62 -2.91 -0.02 4.25 16 35 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.09 1.82 7.34 -2.39 -0.02 1.81 16 37 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.06 2.37 6.20 -2.39 -0.01 2.36 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 2.10 6.06 -2.39 -0.01 2.09 16 43 H 0.00 0.08 7.74 -2.39 -0.02 0.06 16 44 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 45 H 0.06 2.00 7.93 -2.39 -0.02 1.98 16 46 H 0.03 0.99 6.93 -2.39 -0.02 0.97 16 47 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -73.24 381.65 4.06 -69.17 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.30 Total: 23.62 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 5.15 Total: -4.44 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.18 Total: -117.14 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.77 Total: -17.61 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.24 4.06 -69.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569573411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.177 kcal (2) G-P(sol) polarization free energy of solvation -73.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds