Wall clock time and date at job start Tue Mar 31 2020 17:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35929 * 117.00040 * 2 1 4 4 C 1.38851 * 120.40298 * 359.97438 * 3 2 1 5 5 N 1.31876 * 120.99955 * 180.02562 * 4 3 2 6 6 C 1.31685 * 121.94035 * 359.72176 * 5 4 3 7 7 C 1.39525 * 120.69022 * 0.54083 * 6 5 4 8 8 C 1.47857 * 120.53205 * 179.75527 * 7 6 5 9 9 O 1.21546 * 120.00181 * 135.23654 * 8 7 6 10 10 N 1.34777 * 119.99581 * 314.96294 * 8 7 6 11 11 C 1.47020 * 125.64918 * 354.86874 * 10 8 7 12 12 C 1.54329 * 107.27090 * 181.02242 * 11 10 8 13 13 H 1.09002 * 110.72312 * 263.65007 * 12 11 10 14 14 C 1.53004 * 110.71934 * 140.55813 * 12 11 10 15 15 C 1.55156 * 102.94189 * 22.19706 * 12 11 10 16 16 H 1.08997 * 111.00591 * 82.60837 * 15 12 11 17 17 C 1.52998 * 111.00456 * 206.42410 * 15 12 11 18 18 N 1.46493 * 109.47261 * 184.99953 * 17 15 12 19 19 C 1.36939 * 120.00412 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99449 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00333 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00378 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00007 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47012 * 119.99830 * 23 21 19 26 26 H 1.48497 * 109.47210 * 239.99815 * 23 21 19 27 27 C 1.47426 * 125.64583 * 174.56423 * 10 8 7 28 28 C 1.38844 * 120.40476 * 179.97438 * 3 2 1 29 29 C 1.50698 * 120.88417 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47249 * 59.99933 * 1 2 3 31 31 H 1.09007 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47386 * 299.99638 * 1 2 3 33 33 H 1.07997 * 119.49706 * 0.03502 * 4 3 2 34 34 H 1.07998 * 119.65431 * 180.27142 * 6 5 4 35 35 H 1.08994 * 109.88665 * 300.44183 * 11 10 8 36 36 H 1.08997 * 109.88352 * 61.61172 * 11 10 8 37 37 H 1.09004 * 109.47330 * 61.45135 * 14 12 11 38 38 H 1.09000 * 109.47028 * 181.45577 * 14 12 11 39 39 H 1.09007 * 109.47030 * 301.45644 * 14 12 11 40 40 H 1.09004 * 109.46897 * 304.99899 * 17 15 12 41 41 H 1.08997 * 109.47091 * 64.99444 * 17 15 12 42 42 H 0.97007 * 120.00382 * 359.97438 * 18 17 15 43 43 H 0.96994 * 120.00485 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.36527 * 274.74157 * 27 10 8 45 45 H 1.08998 * 110.37143 * 37.07023 * 27 10 8 46 46 H 1.08995 * 109.47336 * 274.31648 * 29 28 3 47 47 H 1.09000 * 109.46646 * 34.31469 * 29 28 3 48 48 H 1.09002 * 109.47239 * 154.30967 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 -0.0010 6 6 3.1952 3.6892 0.0044 7 6 4.0198 2.5637 -0.0004 8 6 5.4910 2.7104 0.0002 9 8 6.1700 2.0239 0.7385 10 7 6.0797 3.6016 -0.8219 11 6 5.3942 4.4111 -1.8400 12 6 6.4692 5.2614 -2.5492 13 1 6.5220 6.2588 -2.1126 14 6 6.1897 5.3444 -4.0512 15 6 7.7749 4.4688 -2.2768 16 1 7.8925 3.6527 -2.9898 17 6 8.9932 5.3939 -2.3008 18 7 10.2143 4.5971 -2.1595 19 6 11.4373 5.2133 -2.1541 20 1 11.5015 6.2867 -2.2545 21 6 12.5943 4.4582 -2.0208 22 7 12.5161 3.1500 -1.8989 23 14 14.2625 5.2988 -2.0128 24 1 14.0787 6.7648 -2.1619 25 1 14.9536 5.0151 -0.7293 26 1 15.0812 4.7849 -3.1400 27 6 7.5165 3.9307 -0.8449 28 6 3.4320 1.2936 0.0005 29 6 4.2810 0.0485 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2196 2.3225 -0.0004 34 1 3.6365 4.6749 0.0082 35 1 4.9013 3.7596 -2.5615 36 1 4.6611 5.0622 -1.3640 37 1 5.2256 5.8258 -4.2154 38 1 6.9738 5.9268 -4.5351 39 1 6.1705 4.3395 -4.4733 40 1 9.0199 5.9351 -3.2467 41 1 8.9259 6.1049 -1.4774 42 1 10.1567 3.6329 -2.0697 43 1 13.3246 2.6224 -1.8053 44 1 7.7422 4.6967 -0.1029 45 1 8.1134 3.0371 -0.6625 46 1 4.4214 -0.2955 1.0252 47 1 3.7846 -0.7297 -0.5792 48 1 5.2510 0.2701 -0.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569841686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:56 Heat of formation + Delta-G solvation = -22.767406 kcal Electronic energy + Delta-G solvation = -28776.763713 eV Core-core repulsion = 24832.467283 eV Total energy + Delta-G solvation = -3944.296430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34536 -40.00425 -38.47574 -37.77805 -34.71594 -34.02552 -33.02102 -31.49294 -31.06992 -29.09599 -28.16799 -27.97992 -26.50924 -25.63196 -24.01956 -22.94253 -22.54883 -21.19002 -20.04506 -19.81473 -18.27720 -17.82225 -17.04547 -16.71878 -16.63909 -16.36225 -16.02443 -15.18016 -14.82269 -14.52363 -14.34086 -14.20234 -14.06495 -13.65818 -13.51016 -13.16901 -13.06546 -13.04454 -12.93436 -12.64990 -12.45209 -12.32052 -12.19867 -11.98761 -11.95715 -11.88185 -11.35536 -11.08891 -10.87430 -10.60942 -10.47223 -10.39411 -10.37199 -9.99059 -9.75978 -9.66452 -9.56240 -8.87690 -8.82511 -8.60688 -6.92048 -5.75184 -3.04571 0.40740 0.87480 2.47553 2.70098 3.01429 3.41325 3.44576 3.49878 3.52409 4.01022 4.14908 4.24922 4.41704 4.47640 4.52467 4.58382 4.66982 4.71691 4.83127 4.93174 4.94907 5.05824 5.20555 5.27383 5.39748 5.46073 5.48290 5.50321 5.53755 5.59016 5.72022 5.80658 5.84681 5.90603 5.98798 6.03755 6.09319 6.14759 6.18414 6.24098 6.38076 6.42001 6.69882 6.74365 6.82144 7.45119 7.50174 7.71238 8.05332 8.43007 9.54387 10.11293 10.45419 11.47533 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.002437 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.115908 B =11486.961217 C =12294.712594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.070 3.930 4 C 0.034 3.966 5 N -0.454 5.454 6 C 0.098 3.902 7 C -0.139 4.139 8 C 0.577 3.423 9 O -0.520 6.520 10 N -0.610 5.610 11 C 0.100 3.900 12 C -0.098 4.098 13 H 0.089 0.911 14 C -0.140 4.140 15 C -0.100 4.100 16 H 0.087 0.913 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.115 3.885 28 C -0.022 4.022 29 C -0.110 4.110 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.924 -2.173 0.568 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.022 3.978 4 C -0.123 4.123 5 N -0.163 5.163 6 C -0.061 4.061 7 C -0.144 4.144 8 C 0.363 3.637 9 O -0.397 6.397 10 N -0.343 5.343 11 C -0.023 4.023 12 C -0.117 4.117 13 H 0.107 0.893 14 C -0.198 4.198 15 C -0.120 4.120 16 H 0.105 0.895 17 C 0.038 3.962 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.006 4.006 28 C -0.031 4.031 29 C -0.166 4.166 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.907 -1.944 1.011 27.993 hybrid contribution 1.084 -0.449 0.063 1.175 sum -26.823 -2.393 1.074 26.951 Atomic orbital electron populations 1.23155 0.77880 1.04568 1.01595 1.86106 1.21601 1.25506 1.88533 1.19718 0.92174 0.86090 0.99811 1.23042 1.00657 0.87086 1.01508 1.67553 1.11762 1.25934 1.11061 1.22929 0.88450 0.98258 0.96452 1.20746 0.94799 0.93851 1.05020 1.17538 0.86241 0.79500 0.80373 1.90840 1.64532 1.43730 1.40575 1.48443 1.10240 1.39970 1.35684 1.22327 0.95706 0.93836 0.90411 1.22230 0.93966 0.99138 0.96377 0.89287 1.21747 1.01606 1.02265 0.94152 1.22716 0.94619 0.98930 0.95698 0.89476 1.20579 0.84852 0.92669 0.98119 1.42376 1.00490 1.06383 1.88474 1.19244 0.83841 0.91882 1.42158 0.91114 1.24752 0.97834 0.95501 1.02883 1.69666 1.27467 1.03949 1.56902 0.86127 0.84526 0.78397 0.77184 1.20568 1.21866 1.21899 1.22468 0.79100 1.01498 0.97551 1.19744 0.90909 0.95630 0.96779 1.20742 0.98945 0.93209 1.03723 0.92311 0.87712 0.92323 0.82130 0.81762 0.91320 0.91263 0.92648 0.91527 0.92461 0.95736 0.96043 0.78218 0.93523 0.90731 0.89526 0.89740 0.90728 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.71 9.75 -19.52 -0.19 -2.90 16 3 C 0.07 0.72 6.68 -39.13 -0.26 0.46 16 4 C 0.03 0.32 10.21 -17.31 -0.18 0.15 16 5 N -0.45 -4.98 10.34 -12.80 -0.13 -5.11 16 6 C 0.10 1.09 9.62 -17.14 -0.16 0.92 16 7 C -0.14 -1.77 5.39 -104.84 -0.56 -2.33 16 8 C 0.58 8.72 6.68 -12.32 -0.08 8.64 16 9 O -0.52 -9.69 15.60 5.33 0.08 -9.61 16 10 N -0.61 -8.48 3.32 -171.49 -0.57 -9.05 16 11 C 0.10 1.07 5.52 -3.06 -0.02 1.06 16 12 C -0.10 -1.10 3.01 -88.78 -0.27 -1.37 16 13 H 0.09 0.94 8.04 -51.93 -0.42 0.53 16 14 C -0.14 -1.39 9.13 37.16 0.34 -1.05 16 15 C -0.10 -1.52 2.51 -88.35 -0.22 -1.74 16 16 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 17 C 0.17 3.13 5.72 -4.05 -0.02 3.11 16 18 N -0.73 -18.17 5.55 -59.92 -0.33 -18.51 16 19 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.12 1.85 6.36 -2.41 -0.02 1.83 16 28 C -0.02 -0.26 5.96 -103.76 -0.62 -0.88 16 29 C -0.11 -1.31 8.94 36.00 0.32 -0.98 16 30 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.20 7.68 -51.93 -0.40 -0.19 16 33 H 0.16 1.00 6.30 -52.49 -0.33 0.66 16 34 H 0.17 1.55 6.18 -52.49 -0.32 1.23 16 35 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 36 H 0.07 0.61 5.77 -51.93 -0.30 0.31 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.41 7.96 -51.93 -0.41 0.00 16 42 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 45 H 0.09 1.63 7.99 -51.93 -0.41 1.21 16 46 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 48 H 0.08 1.07 6.47 -51.93 -0.34 0.73 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -33.85 387.75 -7.97 -41.82 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.36 Total: 6.10 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.01 Total: 1.60 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.31 Total: -60.30 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.11 Total: -12.51 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.85 -7.97 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569841686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.049 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds