Wall clock time and date at job start Tue Mar 31 2020 17:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38356 * 119.41081 * 2 1 4 4 C 1.38333 * 119.46036 * 179.74306 * 3 2 1 5 5 C 1.50700 * 120.82727 * 180.26010 * 4 3 2 6 6 C 1.39989 * 118.34879 * 0.48007 * 4 3 2 7 7 C 1.47523 * 120.59742 * 179.80469 * 6 4 3 8 8 O 1.21595 * 119.99857 * 269.71991 * 7 6 4 9 9 N 1.34773 * 120.00293 * 89.71865 * 7 6 4 10 10 C 1.46929 * 120.63124 * 5.10564 * 9 7 6 11 11 C 1.53194 * 108.89376 * 233.68213 * 10 9 7 12 12 C 1.53047 * 109.31032 * 305.29373 * 11 10 9 13 13 C 1.53036 * 109.53874 * 61.36964 * 12 11 10 14 14 C 1.47211 * 120.81293 * 185.25150 * 9 7 6 15 15 H 1.09002 * 109.55887 * 246.15121 * 14 9 7 16 16 C 1.53001 * 109.53354 * 6.53377 * 14 9 7 17 17 N 1.46502 * 109.46859 * 286.90565 * 16 14 9 18 18 C 1.36932 * 119.99507 * 185.39591 * 17 16 14 19 19 H 1.08002 * 120.00371 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99909 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99654 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00244 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46991 * 90.00152 * 22 20 18 24 24 H 1.48500 * 109.47102 * 210.00201 * 22 20 18 25 25 H 1.48501 * 109.46939 * 329.99840 * 22 20 18 26 26 C 1.40278 * 118.80553 * 359.52513 * 6 4 3 27 27 O 1.35434 * 119.80089 * 180.25238 * 26 6 4 28 28 N 1.31888 * 119.40593 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46903 * 270.01581 * 1 2 3 30 30 H 1.08995 * 109.46688 * 30.02041 * 1 2 3 31 31 H 1.09003 * 109.47032 * 150.02070 * 1 2 3 32 32 H 1.08004 * 120.26334 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46930 * 270.22909 * 5 4 3 34 34 H 1.09001 * 109.47113 * 30.22328 * 5 4 3 35 35 H 1.08999 * 109.47675 * 150.22707 * 5 4 3 36 36 H 1.08996 * 109.58255 * 113.82567 * 10 9 7 37 37 H 1.08999 * 109.58292 * 353.54105 * 10 9 7 38 38 H 1.08996 * 109.49782 * 65.24613 * 11 10 9 39 39 H 1.08999 * 109.49444 * 185.34444 * 11 10 9 40 40 H 1.09001 * 109.45700 * 181.38493 * 12 11 10 41 41 H 1.08993 * 109.45941 * 301.35467 * 12 11 10 42 42 H 1.08999 * 109.50202 * 58.57730 * 13 12 11 43 43 H 1.08997 * 109.49806 * 178.68363 * 13 12 11 44 44 H 1.08995 * 109.47352 * 46.90940 * 16 14 9 45 45 H 1.08997 * 109.46618 * 166.90686 * 16 14 9 46 46 H 0.96992 * 120.00160 * 5.39883 * 17 16 14 47 47 H 0.97005 * 120.00016 * 180.02562 * 21 20 18 48 48 H 0.96701 * 113.99784 * 89.99984 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0054 5 6 4.3409 2.5012 0.0114 6 6 4.2356 -0.0249 0.0004 7 6 5.7097 -0.0815 0.0015 8 8 6.3180 -0.1052 -1.0512 9 7 6.3823 -0.1070 1.1691 10 6 5.6614 -0.1915 2.4466 11 6 6.1200 0.9562 3.3518 12 6 7.6437 0.9146 3.4892 13 6 8.2870 1.0985 2.1129 14 6 7.8530 -0.0476 1.1936 15 1 8.2500 -0.9897 1.5718 16 6 8.3785 0.2027 -0.2214 17 7 8.2255 -1.0148 -1.0216 18 6 8.7292 -1.0656 -2.2939 19 1 9.2389 -0.2080 -2.7076 20 6 8.5838 -2.2191 -3.0524 21 7 7.9613 -3.2637 -2.5488 22 14 9.2703 -2.2882 -4.7883 23 1 10.6679 -2.7886 -4.7483 24 1 8.4404 -3.2030 -5.6127 25 1 9.2482 -0.9280 -5.3838 26 6 3.4758 -1.2042 0.0003 27 8 4.0992 -2.4065 0.0007 28 7 2.1546 -1.1490 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3632 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6411 2.1375 0.0004 33 1 4.5273 2.8179 -1.0148 34 1 3.7619 3.2665 0.5283 35 1 5.2912 2.3558 0.5251 36 1 5.8798 -1.1452 2.9269 37 1 4.5894 -0.1095 2.2673 38 1 5.8201 1.9078 2.9129 39 1 5.6629 0.8486 4.3354 40 1 7.9704 1.7154 4.1527 41 1 7.9446 -0.0469 3.9050 42 1 7.9666 2.0487 1.6856 43 1 9.3721 1.0922 2.2147 44 1 7.8128 1.0131 -0.6810 45 1 9.4325 0.4765 -0.1743 46 1 7.7674 -1.7849 -0.6502 47 1 7.8600 -4.0699 -3.0787 48 1 4.2799 -2.7555 0.8842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661937822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:37 Heat of formation + Delta-G solvation = -22.709259 kcal Electronic energy + Delta-G solvation = -30962.909411 eV Core-core repulsion = 27018.615503 eV Total energy + Delta-G solvation = -3944.293908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18133 -40.81169 -38.42891 -38.15745 -36.46766 -35.16572 -33.72374 -33.61803 -32.65050 -31.51455 -29.40794 -28.46411 -27.55589 -25.84236 -24.50233 -24.35101 -23.19486 -22.35800 -21.52887 -20.26252 -19.55012 -19.18147 -18.30378 -17.86542 -17.07426 -16.70335 -16.61311 -15.99824 -15.70827 -15.45646 -15.25531 -15.09429 -14.94067 -14.74781 -14.54614 -14.19016 -14.05015 -13.95036 -13.90147 -13.73797 -13.47819 -13.22716 -13.13884 -12.94922 -12.81500 -12.75885 -12.69451 -12.58208 -12.17314 -12.10245 -11.87063 -11.71879 -11.51394 -11.38240 -10.91461 -10.69844 -10.55106 -10.08136 -9.69549 -9.44884 -8.63998 -7.83152 -5.01872 -0.20361 0.07528 1.39553 1.43863 1.51309 1.79307 2.04608 2.42845 2.57366 2.60388 3.41857 3.49386 3.59540 3.63329 3.82503 3.87749 3.98508 4.05432 4.12092 4.24374 4.31972 4.33854 4.38894 4.48580 4.53726 4.58650 4.61620 4.66003 4.70708 4.82663 4.85906 4.94886 4.99843 5.02381 5.05497 5.11294 5.13223 5.18748 5.19608 5.25108 5.29544 5.49455 5.52466 5.57361 5.80583 6.36697 6.47009 6.57197 6.86747 7.42090 7.48167 8.25797 8.47273 9.41315 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.005184 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.582934 B = 5399.478963 C = 7136.917963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.151 3.849 3 C -0.173 4.173 4 C -0.001 4.001 5 C -0.115 4.115 6 C -0.202 4.202 7 C 0.538 3.462 8 O -0.498 6.498 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.124 4.124 12 C -0.112 4.112 13 C -0.118 4.118 14 C 0.147 3.853 15 H 0.060 0.940 16 C 0.163 3.837 17 N -0.702 5.702 18 C -0.212 4.212 19 H 0.062 0.938 20 C -0.086 4.086 21 N -0.971 5.971 22 Si 0.965 3.035 23 H -0.282 1.282 24 H -0.301 1.301 25 H -0.277 1.277 26 C 0.326 3.674 27 O -0.492 6.492 28 N -0.531 5.531 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.015 0.985 45 H 0.019 0.981 46 H 0.367 0.633 47 H 0.242 0.758 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 15.136 19.082 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.013 3.987 3 C -0.193 4.193 4 C -0.009 4.009 5 C -0.171 4.171 6 C -0.209 4.209 7 C 0.323 3.677 8 O -0.370 6.370 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.162 4.162 12 C -0.149 4.149 13 C -0.156 4.156 14 C 0.044 3.956 15 H 0.078 0.922 16 C 0.037 3.963 17 N -0.342 5.342 18 C -0.345 4.345 19 H 0.080 0.920 20 C -0.277 4.277 21 N -0.624 5.624 22 Si 0.796 3.204 23 H -0.209 1.209 24 H -0.228 1.228 25 H -0.202 1.202 26 C 0.148 3.852 27 O -0.301 6.301 28 N -0.253 5.253 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.203 0.797 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.033 0.967 45 H 0.037 0.963 46 H 0.198 0.802 47 H 0.051 0.949 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -13.786 14.455 17.751 26.723 hybrid contribution 0.922 -0.666 -1.013 1.523 sum -12.865 13.789 16.738 25.215 Atomic orbital electron populations 1.20898 0.85381 1.04656 1.04835 1.21913 0.98725 0.86745 0.91349 1.22152 0.92726 1.00739 1.03645 1.20570 0.94688 0.93806 0.91869 1.20916 0.99885 0.92932 1.03364 1.21029 0.94786 0.94956 1.10150 1.18279 0.86479 0.78289 0.84633 1.91315 1.67228 1.45606 1.32873 1.48010 1.06003 1.74050 1.05703 1.21854 0.96249 1.00325 0.83233 1.21885 0.96463 0.97778 1.00072 1.21496 0.94852 1.03180 0.95403 1.21865 1.01468 0.96736 0.95557 1.21460 0.79213 0.99362 0.95593 0.92186 1.20888 0.95582 0.90208 0.89647 1.42285 1.66510 1.12432 1.12986 1.19481 1.25646 0.97113 0.92252 0.91985 1.25396 1.03582 0.96709 1.02048 1.69849 1.50470 1.04202 1.37885 0.85232 0.77506 0.76889 0.80817 1.20924 1.22822 1.20235 1.19253 0.86925 0.84586 0.94455 1.84873 1.77037 1.33428 1.34713 1.67068 1.08755 1.32331 1.17115 0.87950 0.87517 0.91332 0.79690 0.90906 0.86487 0.92041 0.90977 0.90632 0.91328 0.88201 0.89294 0.91495 0.91562 0.89896 0.96740 0.96312 0.80188 0.94907 0.73017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.16 71.24 0.72 -0.66 16 2 C 0.15 3.47 6.78 42.58 0.29 3.76 16 3 C -0.17 -3.40 9.41 22.32 0.21 -3.19 16 4 C 0.00 -0.04 5.95 -19.42 -0.12 -0.15 16 5 C -0.11 -2.37 9.69 71.24 0.69 -1.68 16 6 C -0.20 -6.95 3.64 -19.91 -0.07 -7.02 16 7 C 0.54 21.53 4.92 86.69 0.43 21.96 16 8 O -0.50 -26.58 10.87 -4.02 -0.04 -26.63 16 9 N -0.60 -18.99 2.98 -798.07 -2.38 -21.38 16 10 C 0.11 2.25 6.34 86.36 0.55 2.80 16 11 C -0.12 -1.82 6.08 30.67 0.19 -1.64 16 12 C -0.11 -1.75 5.88 30.62 0.18 -1.57 16 13 C -0.12 -2.67 5.34 30.67 0.16 -2.51 16 14 C 0.15 4.91 2.91 44.92 0.13 5.04 16 15 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 16 C 0.16 7.37 4.89 86.38 0.42 7.79 16 17 N -0.70 -40.35 3.20 -343.45 -1.10 -41.45 16 18 C -0.21 -13.44 9.74 84.04 0.82 -12.62 16 19 H 0.06 3.84 7.83 -2.91 -0.02 3.81 16 20 C -0.09 -5.60 5.50 84.86 0.47 -5.14 16 21 N -0.97 -66.80 13.06 21.65 0.28 -66.52 16 22 Si 0.97 52.10 29.55 68.60 2.03 54.13 16 23 H -0.28 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.30 -16.43 7.11 99.48 0.71 -15.73 16 25 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 26 C 0.33 11.81 7.67 85.13 0.65 12.46 16 27 O -0.49 -19.63 13.02 -87.30 -1.14 -20.76 16 28 N -0.53 -16.98 10.28 -296.04 -3.04 -20.02 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.85 8.07 -2.39 -0.02 0.83 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.06 1.44 7.19 -2.39 -0.02 1.42 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.60 6.24 -2.39 -0.01 1.58 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.01 0.73 6.38 -2.39 -0.02 0.71 16 45 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 46 H 0.37 22.82 7.22 -92.71 -0.67 22.15 16 47 H 0.24 16.24 8.31 -92.70 -0.77 15.47 16 48 H 0.41 11.89 9.06 -74.06 -0.67 11.22 16 Total: -1.00 -92.44 383.29 -0.03 -92.47 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.36 Total: 32.52 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.72 Total: 17.63 kcal Atomic # 7 Polarization: -143.12 SS G_CDS: -6.24 Total: -149.36 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -1.18 Total: -47.39 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.03 Total: 54.13 kcal Total: -92.44 -0.03 -92.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661937822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.761 kcal (2) G-P(sol) polarization free energy of solvation -92.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds