Wall clock time and date at job start Tue Mar 31 2020 17:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38096 * 119.58328 * 2 1 4 4 C 1.38773 * 119.29174 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.75965 * 180.02562 * 4 3 2 6 6 C 1.38422 * 118.48755 * 359.97438 * 4 3 2 7 7 C 1.50697 * 120.44821 * 179.97438 * 6 4 3 8 8 C 1.50709 * 109.47152 * 89.99553 * 7 6 4 9 9 O 1.21274 * 119.99653 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00154 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47325 * 180.02562 * 11 10 8 13 13 H 1.09001 * 110.78085 * 51.76059 * 12 11 10 14 14 C 1.55158 * 110.72138 * 174.99863 * 12 11 10 15 15 C 1.54908 * 101.58024 * 153.86363 * 14 12 11 16 16 N 1.47426 * 104.92948 * 322.93552 * 15 14 12 17 17 C 1.36940 * 125.64782 * 204.15046 * 16 15 14 18 18 H 1.07998 * 120.00050 * 161.52040 * 17 16 15 19 19 C 1.38813 * 119.99845 * 341.52923 * 17 16 15 20 20 N 1.31625 * 119.99502 * 157.60351 * 19 17 16 21 21 Si 1.86792 * 120.00162 * 337.60447 * 19 17 16 22 22 H 1.48498 * 109.47196 * 84.54220 * 21 19 17 23 23 H 1.48510 * 109.47106 * 204.53762 * 21 19 17 24 24 H 1.48492 * 109.47267 * 324.53766 * 21 19 17 25 25 C 1.47283 * 108.55833 * 24.15781 * 16 15 14 26 26 C 1.38877 * 119.10949 * 0.25183 * 6 4 3 27 27 O 1.35678 * 119.68421 * 179.72929 * 26 6 4 28 28 N 1.31936 * 119.58994 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47507 * 90.00432 * 1 2 3 30 30 H 1.09006 * 109.46309 * 210.00222 * 1 2 3 31 31 H 1.08999 * 109.47418 * 329.99836 * 1 2 3 32 32 H 1.08003 * 120.34894 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47434 * 269.97555 * 5 4 3 34 34 H 1.08995 * 109.47260 * 29.97504 * 5 4 3 35 35 H 1.09001 * 109.47227 * 149.97482 * 5 4 3 36 36 H 1.08995 * 109.47169 * 329.99820 * 7 6 4 37 37 H 1.08997 * 109.47244 * 209.99777 * 7 6 4 38 38 H 0.97005 * 119.99911 * 0.02562 * 10 8 7 39 39 H 1.08995 * 109.46916 * 59.99887 * 11 10 8 40 40 H 1.08997 * 109.47034 * 300.00127 * 11 10 8 41 41 H 1.08995 * 111.00138 * 35.79092 * 14 12 11 42 42 H 1.08996 * 111.03892 * 271.95350 * 14 12 11 43 43 H 1.09001 * 110.37003 * 81.82903 * 15 14 12 44 44 H 1.09001 * 110.36869 * 204.04618 * 15 14 12 45 45 H 0.97002 * 119.99552 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.86001 * 239.49686 * 25 16 15 47 47 H 1.09000 * 110.00602 * 118.42786 * 25 16 15 48 48 H 0.96710 * 114.00328 * 90.00061 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5764 1.1939 -0.0005 5 6 4.3537 2.4849 0.0000 6 6 4.2305 -0.0261 -0.0005 7 6 5.7363 -0.0853 -0.0017 8 6 6.2394 -0.1043 1.4188 9 8 5.4526 -0.0733 2.3412 10 7 7.5636 -0.1557 1.6641 11 6 8.0527 -0.1748 3.0449 12 6 9.5815 -0.2335 3.0437 13 1 9.9982 0.5516 2.4128 14 6 10.1360 -0.1285 4.4890 15 6 11.4930 -0.8637 4.3557 16 7 11.2327 -1.9751 3.4227 17 6 11.9492 -3.1398 3.3492 18 1 11.5246 -4.0052 2.8622 19 6 13.2212 -3.2081 3.9007 20 7 13.7326 -4.3746 4.2330 21 14 14.2071 -1.6448 4.1712 22 1 13.8215 -1.0347 5.4690 23 1 15.6561 -1.9700 4.1884 24 1 13.9279 -0.6869 3.0715 25 6 10.0742 -1.6220 2.5845 26 6 3.4803 -1.1948 -0.0053 27 8 4.1094 -2.3970 -0.0109 28 7 2.1584 -1.1473 -0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6476 2.1356 -0.0004 33 1 4.5412 2.7967 -1.0275 34 1 3.7788 3.2550 0.5142 35 1 5.3036 2.3369 0.5138 36 1 6.1339 0.7894 -0.5162 37 1 6.0640 -0.9891 -0.5153 38 1 8.1929 -0.1801 0.9263 39 1 7.6555 -1.0500 3.5589 40 1 7.7245 0.7286 3.5590 41 1 9.4827 -0.6394 5.1962 42 1 10.2823 0.9124 4.7773 43 1 12.2489 -0.1937 3.9460 44 1 11.8128 -1.2484 5.3241 45 1 14.6216 -4.4223 4.6180 46 1 9.2824 -2.3591 2.7178 47 1 10.3707 -1.5822 1.5364 48 1 4.2922 -2.7494 0.8709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663612295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:55 Heat of formation + Delta-G solvation = -26.348118 kcal Electronic energy + Delta-G solvation = -28337.097708 eV Core-core repulsion = 24392.646007 eV Total energy + Delta-G solvation = -3944.451701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.16066 -39.65235 -38.03337 -37.47086 -35.18090 -34.75100 -32.63804 -32.19547 -30.96870 -30.15292 -28.69578 -28.05806 -26.61528 -25.40567 -23.43722 -22.86038 -21.42095 -21.11542 -20.31727 -19.76120 -18.55947 -17.56549 -17.28175 -16.79121 -16.50017 -15.80268 -15.74020 -15.24616 -15.17991 -14.79098 -14.50167 -13.91197 -13.82455 -13.64384 -13.51150 -13.41537 -13.25538 -13.17995 -12.78692 -12.61454 -12.41392 -12.20821 -12.18257 -12.08441 -11.86736 -11.75819 -11.61699 -11.31031 -11.05263 -10.64198 -10.58677 -10.19624 -10.03913 -9.97640 -9.68301 -9.63269 -9.46058 -9.13195 -8.88267 -8.70842 -7.07424 -5.96788 -3.27338 0.71483 0.93089 2.49375 2.99583 3.24087 3.32007 3.45120 3.47392 3.57680 4.14185 4.27520 4.52222 4.52384 4.55615 4.65699 4.81788 4.88956 4.95007 5.01832 5.04454 5.05929 5.07079 5.16805 5.18838 5.26210 5.33265 5.42261 5.44577 5.52084 5.56766 5.72381 5.74781 5.76970 5.80101 5.97121 5.98258 6.06055 6.23012 6.27629 6.32000 6.46616 6.57841 6.68126 6.71782 7.26275 7.38426 7.68153 7.71812 8.08739 8.29021 8.80812 9.66382 10.15192 11.19332 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.002175 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.211775 B =12867.928034 C =13444.027422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 C -0.184 4.184 4 C -0.012 4.012 5 C -0.119 4.119 6 C -0.135 4.135 7 C -0.100 4.100 8 C 0.514 3.486 9 O -0.540 6.540 10 N -0.725 5.725 11 C 0.133 3.867 12 C -0.116 4.116 13 H 0.080 0.920 14 C -0.121 4.121 15 C 0.110 3.890 16 N -0.609 5.609 17 C -0.243 4.243 18 H 0.092 0.908 19 C 0.021 3.979 20 N -0.908 5.908 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.302 1.302 24 H -0.278 1.278 25 C 0.140 3.860 26 C 0.333 3.667 27 O -0.482 6.482 28 N -0.507 5.507 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.403 0.597 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.263 0.737 46 H 0.035 0.965 47 H 0.029 0.971 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.492 15.853 -9.871 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.013 3.987 3 C -0.204 4.204 4 C -0.020 4.020 5 C -0.175 4.175 6 C -0.139 4.139 7 C -0.140 4.140 8 C 0.300 3.700 9 O -0.417 6.417 10 N -0.376 5.376 11 C 0.009 3.991 12 C -0.136 4.136 13 H 0.099 0.901 14 C -0.160 4.160 15 C -0.015 4.015 16 N -0.336 5.336 17 C -0.370 4.370 18 H 0.109 0.891 19 C -0.178 4.178 20 N -0.552 5.552 21 Si 0.715 3.285 22 H -0.212 1.212 23 H -0.230 1.230 24 H -0.204 1.204 25 C 0.015 3.985 26 C 0.154 3.846 27 O -0.290 6.290 28 N -0.227 5.227 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.237 0.763 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -23.302 14.918 -9.735 29.331 hybrid contribution 1.686 1.354 0.271 2.179 sum -21.616 16.272 -9.464 28.663 Atomic orbital electron populations 1.20737 0.88543 1.03661 1.03177 1.20978 0.96728 0.87201 0.93744 1.21774 0.93877 0.99352 1.05436 1.20041 0.93730 0.94791 0.93433 1.20864 1.00253 0.93550 1.02850 1.20086 0.95382 0.92850 1.05575 1.20552 0.91947 1.06101 0.95406 1.20453 0.82358 0.76286 0.90944 1.90722 1.55351 1.49404 1.46200 1.46068 1.06901 1.74964 1.09689 1.21419 0.93293 1.02267 0.82077 1.22466 0.93052 0.99335 0.98697 0.90146 1.22716 0.98131 1.00088 0.95112 1.21960 0.94402 0.90209 0.94964 1.44831 1.34172 1.17418 1.37199 1.18633 0.95963 0.86898 1.35466 0.89087 1.25009 0.96950 0.96331 0.99498 1.69851 1.17722 1.23513 1.44067 0.86949 0.79072 0.84381 0.78082 1.21214 1.23043 1.20377 1.21445 0.90721 0.92218 0.94136 1.18836 0.86588 0.84974 0.94169 1.84695 1.76449 1.33420 1.34396 1.66989 1.09530 1.30719 1.15462 0.90260 0.90324 0.90492 0.84519 0.90158 0.90621 0.90928 0.87634 0.86844 0.76266 0.90991 0.91557 0.90809 0.91389 0.95734 0.92200 0.92695 0.94746 0.95328 0.73744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 36.00 0.37 -0.33 16 2 C 0.15 1.54 6.78 -82.60 -0.56 0.98 16 3 C -0.18 -1.64 9.44 -39.44 -0.37 -2.01 16 4 C -0.01 -0.12 5.91 -104.36 -0.62 -0.73 16 5 C -0.12 -0.79 9.28 36.01 0.33 -0.46 16 6 C -0.14 -1.46 4.40 -104.32 -0.46 -1.92 16 7 C -0.10 -0.88 4.96 -29.03 -0.14 -1.02 16 8 C 0.51 5.83 7.51 -10.98 -0.08 5.75 16 9 O -0.54 -8.18 16.03 5.56 0.09 -8.09 16 10 N -0.72 -7.59 5.47 -60.30 -0.33 -7.92 16 11 C 0.13 1.65 5.02 -4.04 -0.02 1.63 16 12 C -0.12 -1.64 2.96 -88.78 -0.26 -1.90 16 13 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.89 6.53 -24.58 -0.16 -2.05 16 15 C 0.11 2.31 4.69 -2.53 -0.01 2.29 16 16 N -0.61 -14.37 3.22 -169.86 -0.55 -14.92 16 17 C -0.24 -6.83 10.58 -15.06 -0.16 -6.99 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 20 N -0.91 -27.94 13.97 55.49 0.78 -27.16 16 21 Si 0.88 22.38 24.27 -169.99 -4.13 18.26 16 22 H -0.29 -6.92 6.48 56.52 0.37 -6.56 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.28 -6.90 6.65 56.52 0.38 -6.52 16 25 C 0.14 2.57 6.77 -2.92 -0.02 2.55 16 26 C 0.33 4.14 7.72 -17.13 -0.13 4.01 16 27 O -0.48 -5.57 12.62 -18.74 -0.24 -5.80 16 28 N -0.51 -6.50 10.30 -9.55 -0.10 -6.60 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 35 H 0.07 0.53 6.55 -51.93 -0.34 0.18 16 36 H 0.11 0.66 6.81 -51.93 -0.35 0.31 16 37 H 0.11 0.92 7.54 -51.93 -0.39 0.52 16 38 H 0.40 3.39 8.47 -40.82 -0.35 3.05 16 39 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.54 5.57 -51.93 -0.29 0.25 16 44 H 0.06 1.36 6.63 -51.93 -0.34 1.02 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.03 0.64 7.68 -51.93 -0.40 0.24 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.40 3.52 9.06 45.56 0.41 3.94 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -36.31 386.17 -7.77 -44.08 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.72 Total: 2.04 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.40 Total: 0.30 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.20 Total: -56.60 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.15 Total: -13.90 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.13 Total: 18.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.31 -7.77 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663612295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.736 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds