Wall clock time and date at job start Tue Mar 31 2020 17:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38096 * 119.58328 * 2 1 4 4 C 1.38773 * 119.29174 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.75965 * 180.02562 * 4 3 2 6 6 C 1.38422 * 118.48755 * 359.97438 * 4 3 2 7 7 C 1.50697 * 120.44821 * 179.97438 * 6 4 3 8 8 C 1.50709 * 109.47152 * 89.99553 * 7 6 4 9 9 O 1.21274 * 119.99653 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00154 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47325 * 180.02562 * 11 10 8 13 13 H 1.09001 * 110.78085 * 51.76059 * 12 11 10 14 14 C 1.55158 * 110.72138 * 174.99863 * 12 11 10 15 15 C 1.54908 * 101.58024 * 153.86363 * 14 12 11 16 16 N 1.47426 * 104.92948 * 322.93552 * 15 14 12 17 17 C 1.36940 * 125.64782 * 204.15046 * 16 15 14 18 18 H 1.07998 * 120.00050 * 161.52040 * 17 16 15 19 19 C 1.38813 * 119.99845 * 341.52923 * 17 16 15 20 20 N 1.31625 * 119.99502 * 157.60351 * 19 17 16 21 21 Si 1.86792 * 120.00162 * 337.60447 * 19 17 16 22 22 H 1.48498 * 109.47196 * 84.54220 * 21 19 17 23 23 H 1.48510 * 109.47106 * 204.53762 * 21 19 17 24 24 H 1.48492 * 109.47267 * 324.53766 * 21 19 17 25 25 C 1.47283 * 108.55833 * 24.15781 * 16 15 14 26 26 C 1.38877 * 119.10949 * 0.25183 * 6 4 3 27 27 O 1.35678 * 119.68421 * 179.72929 * 26 6 4 28 28 N 1.31936 * 119.58994 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47507 * 90.00432 * 1 2 3 30 30 H 1.09006 * 109.46309 * 210.00222 * 1 2 3 31 31 H 1.08999 * 109.47418 * 329.99836 * 1 2 3 32 32 H 1.08003 * 120.34894 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47434 * 269.97555 * 5 4 3 34 34 H 1.08995 * 109.47260 * 29.97504 * 5 4 3 35 35 H 1.09001 * 109.47227 * 149.97482 * 5 4 3 36 36 H 1.08995 * 109.47169 * 329.99820 * 7 6 4 37 37 H 1.08997 * 109.47244 * 209.99777 * 7 6 4 38 38 H 0.97005 * 119.99911 * 0.02562 * 10 8 7 39 39 H 1.08995 * 109.46916 * 59.99887 * 11 10 8 40 40 H 1.08997 * 109.47034 * 300.00127 * 11 10 8 41 41 H 1.08995 * 111.00138 * 35.79092 * 14 12 11 42 42 H 1.08996 * 111.03892 * 271.95350 * 14 12 11 43 43 H 1.09001 * 110.37003 * 81.82903 * 15 14 12 44 44 H 1.09001 * 110.36869 * 204.04618 * 15 14 12 45 45 H 0.97002 * 119.99552 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.86001 * 239.49686 * 25 16 15 47 47 H 1.09000 * 110.00602 * 118.42786 * 25 16 15 48 48 H 0.96710 * 114.00328 * 90.00061 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5764 1.1939 -0.0005 5 6 4.3537 2.4849 0.0000 6 6 4.2305 -0.0261 -0.0005 7 6 5.7363 -0.0853 -0.0017 8 6 6.2394 -0.1043 1.4188 9 8 5.4526 -0.0733 2.3412 10 7 7.5636 -0.1557 1.6641 11 6 8.0527 -0.1748 3.0449 12 6 9.5815 -0.2335 3.0437 13 1 9.9982 0.5516 2.4128 14 6 10.1360 -0.1285 4.4890 15 6 11.4930 -0.8637 4.3557 16 7 11.2327 -1.9751 3.4227 17 6 11.9492 -3.1398 3.3492 18 1 11.5246 -4.0052 2.8622 19 6 13.2212 -3.2081 3.9007 20 7 13.7326 -4.3746 4.2330 21 14 14.2071 -1.6448 4.1712 22 1 13.8215 -1.0347 5.4690 23 1 15.6561 -1.9700 4.1884 24 1 13.9279 -0.6869 3.0715 25 6 10.0742 -1.6220 2.5845 26 6 3.4803 -1.1948 -0.0053 27 8 4.1094 -2.3970 -0.0109 28 7 2.1584 -1.1473 -0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6476 2.1356 -0.0004 33 1 4.5412 2.7967 -1.0275 34 1 3.7788 3.2550 0.5142 35 1 5.3036 2.3369 0.5138 36 1 6.1339 0.7894 -0.5162 37 1 6.0640 -0.9891 -0.5153 38 1 8.1929 -0.1801 0.9263 39 1 7.6555 -1.0500 3.5589 40 1 7.7245 0.7286 3.5590 41 1 9.4827 -0.6394 5.1962 42 1 10.2823 0.9124 4.7773 43 1 12.2489 -0.1937 3.9460 44 1 11.8128 -1.2484 5.3241 45 1 14.6216 -4.4223 4.6180 46 1 9.2824 -2.3591 2.7178 47 1 10.3707 -1.5822 1.5364 48 1 4.2922 -2.7494 0.8709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663612295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:54 Heat of formation + Delta-G solvation = -56.204325 kcal Electronic energy + Delta-G solvation = -28338.392370 eV Core-core repulsion = 24392.646007 eV Total energy + Delta-G solvation = -3945.746363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91430 -40.60750 -39.43608 -38.26416 -36.16201 -35.69303 -34.44147 -32.95362 -32.30445 -31.22556 -30.06052 -28.65401 -27.75951 -26.62445 -24.83054 -23.68014 -22.77805 -22.06888 -21.41366 -20.95131 -19.36127 -18.93116 -18.29977 -17.99861 -17.46778 -17.18594 -16.73900 -16.61234 -16.12457 -15.85716 -15.42538 -15.21280 -15.03901 -14.70167 -14.48561 -14.28607 -14.05863 -13.95894 -13.86612 -13.82752 -13.58517 -13.25675 -13.18692 -12.98068 -12.89901 -12.80636 -12.68501 -12.51704 -12.46330 -12.24999 -12.00118 -11.81927 -11.62212 -11.36839 -11.01854 -10.80883 -10.43381 -10.35376 -10.07222 -9.61646 -9.05041 -8.18697 -5.45214 -0.02290 0.21693 1.30764 1.38751 1.48327 1.62604 2.17150 2.41397 2.47962 2.84395 3.02993 3.30730 3.46629 3.68651 3.69524 3.83226 3.85387 3.88760 3.91660 4.00309 4.27880 4.39567 4.39645 4.41779 4.47302 4.55937 4.57859 4.71038 4.75197 4.77546 4.79484 4.81949 4.84864 4.86195 5.01677 5.03557 5.07918 5.12088 5.19648 5.22490 5.32269 5.36049 5.48458 5.65228 5.67654 6.09323 6.48596 6.56371 6.76355 6.97093 7.24349 7.53712 8.10437 9.01301 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.002175 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.211775 B =12867.928034 C =13444.027422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.132 3.868 3 C -0.184 4.184 4 C -0.020 4.020 5 C -0.116 4.116 6 C -0.148 4.148 7 C -0.091 4.091 8 C 0.518 3.482 9 O -0.580 6.580 10 N -0.716 5.716 11 C 0.143 3.857 12 C -0.094 4.094 13 H 0.108 0.892 14 C -0.111 4.111 15 C 0.099 3.901 16 N -0.631 5.631 17 C -0.236 4.236 18 H 0.055 0.945 19 C -0.042 4.042 20 N -0.959 5.959 21 Si 0.952 3.048 22 H -0.269 1.269 23 H -0.310 1.310 24 H -0.265 1.265 25 C 0.134 3.866 26 C 0.304 3.696 27 O -0.493 6.493 28 N -0.543 5.543 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.169 0.831 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.416 0.584 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.024 0.976 47 H 0.037 0.963 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.386 20.209 -10.676 32.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.004 4.004 3 C -0.203 4.203 4 C -0.028 4.028 5 C -0.172 4.172 6 C -0.152 4.152 7 C -0.131 4.131 8 C 0.305 3.695 9 O -0.460 6.460 10 N -0.368 5.368 11 C 0.019 3.981 12 C -0.114 4.114 13 H 0.126 0.874 14 C -0.150 4.150 15 C -0.026 4.026 16 N -0.358 5.358 17 C -0.365 4.365 18 H 0.072 0.928 19 C -0.237 4.237 20 N -0.605 5.605 21 Si 0.781 3.219 22 H -0.195 1.195 23 H -0.238 1.238 24 H -0.190 1.190 25 C 0.010 3.990 26 C 0.126 3.874 27 O -0.302 6.302 28 N -0.264 5.264 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.186 0.814 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.137 0.863 38 H 0.252 0.748 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.055 0.945 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -24.214 19.313 -10.568 32.726 hybrid contribution 1.831 -0.072 0.496 1.898 sum -22.383 19.242 -10.072 31.188 Atomic orbital electron populations 1.20825 0.86509 1.04365 1.04139 1.21605 0.98272 0.87182 0.93387 1.22164 0.94028 1.00102 1.04051 1.20498 0.94377 0.95503 0.92376 1.20936 0.99731 0.92242 1.04329 1.20292 0.96282 0.92833 1.05787 1.20560 0.90926 1.07803 0.93818 1.20814 0.82042 0.75108 0.91505 1.90710 1.56343 1.51315 1.47615 1.45957 1.07037 1.74416 1.09407 1.21187 0.91867 1.01971 0.83060 1.22340 0.93960 0.97031 0.98028 0.87370 1.22692 0.94728 1.01495 0.96059 1.22113 0.97689 0.89674 0.93086 1.44963 1.34713 1.16889 1.39202 1.18568 0.96275 0.87892 1.33759 0.92753 1.25713 0.98175 0.99466 1.00309 1.69993 1.18109 1.25996 1.46443 0.85855 0.76605 0.80468 0.78993 1.19480 1.23835 1.18983 1.21643 0.88634 0.94746 0.93999 1.19170 0.87001 0.85578 0.95654 1.84659 1.76537 1.33831 1.35132 1.66974 1.10116 1.32442 1.16878 0.89065 0.91343 0.88029 0.81358 0.87980 0.89387 0.91316 0.84493 0.86306 0.74783 0.93096 0.90242 0.90851 0.87520 0.95372 0.94588 0.92912 0.95765 0.94501 0.73118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.17 71.23 0.72 -0.52 16 2 C 0.13 2.61 6.78 42.51 0.29 2.89 16 3 C -0.18 -2.88 9.44 22.36 0.21 -2.67 16 4 C -0.02 -0.33 5.91 -19.69 -0.12 -0.45 16 5 C -0.12 -1.14 9.28 71.24 0.66 -0.48 16 6 C -0.15 -3.03 4.40 -19.67 -0.09 -3.12 16 7 C -0.09 -1.42 4.96 29.10 0.14 -1.27 16 8 C 0.52 10.77 7.51 87.66 0.66 11.43 16 9 O -0.58 -16.98 16.03 -3.01 -0.05 -17.03 16 10 N -0.72 -13.03 5.47 -463.08 -2.53 -15.57 16 11 C 0.14 3.14 5.02 86.38 0.43 3.58 16 12 C -0.09 -2.32 2.96 -9.60 -0.03 -2.35 16 13 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.11 -3.07 6.53 31.99 0.21 -2.86 16 15 C 0.10 3.94 4.69 86.85 0.41 4.35 16 16 N -0.63 -29.44 3.22 -691.31 -2.22 -31.66 16 17 C -0.24 -13.66 10.58 84.03 0.89 -12.77 16 18 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 19 C -0.04 -2.52 5.43 84.86 0.46 -2.05 16 20 N -0.96 -61.14 13.97 21.65 0.30 -60.83 16 21 Si 0.95 46.50 24.27 68.60 1.66 48.17 16 22 H -0.27 -12.29 6.48 99.48 0.65 -11.65 16 23 H -0.31 -15.35 7.11 99.48 0.71 -14.65 16 24 H -0.26 -12.21 6.65 99.48 0.66 -11.55 16 25 C 0.13 4.72 6.77 86.68 0.59 5.31 16 26 C 0.30 7.68 7.72 84.78 0.65 8.33 16 27 O -0.49 -11.89 12.62 -89.96 -1.14 -13.03 16 28 N -0.54 -14.20 10.30 -296.98 -3.06 -17.26 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 32 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.66 8.10 -2.39 -0.02 0.64 16 35 H 0.07 0.75 6.55 -2.39 -0.02 0.73 16 36 H 0.14 1.23 6.81 -2.39 -0.02 1.21 16 37 H 0.12 1.74 7.54 -2.39 -0.02 1.72 16 38 H 0.42 5.58 8.47 -92.70 -0.79 4.79 16 39 H 0.05 1.36 7.93 -2.39 -0.02 1.34 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 42 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.03 1.13 5.57 -2.39 -0.01 1.12 16 44 H 0.04 1.59 6.63 -2.39 -0.02 1.58 16 45 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.02 0.90 7.68 -2.39 -0.02 0.88 16 47 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.41 7.81 9.06 -74.05 -0.67 7.14 16 Total: -1.00 -82.93 386.17 -1.50 -84.44 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.57 Total: 15.43 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.10 Total: 7.35 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -7.51 Total: -125.32 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.18 Total: -30.06 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.66 Total: 48.17 kcal Total: -82.93 -1.50 -84.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663612295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.234 kcal (2) G-P(sol) polarization free energy of solvation -82.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds