Wall clock time and date at job start Tue Mar 31 2020 17:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38359 * 119.40421 * 2 1 4 4 C 1.38335 * 119.45597 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.82476 * 179.97438 * 4 3 2 6 6 C 1.39997 * 118.34995 * 359.97438 * 4 3 2 7 7 C 1.47523 * 120.59673 * 180.02562 * 6 4 3 8 8 O 1.21585 * 120.00058 * 89.99906 * 7 6 4 9 9 N 1.34779 * 119.99459 * 270.00083 * 7 6 4 10 10 C 1.47020 * 125.65030 * 359.95625 * 9 7 6 11 11 C 1.54374 * 107.28767 * 178.94811 * 10 9 7 12 12 C 1.55157 * 102.92019 * 337.86077 * 11 10 9 13 13 H 1.09001 * 111.00410 * 277.36515 * 12 11 10 14 14 C 1.52998 * 111.00554 * 153.54828 * 12 11 10 15 15 N 1.46502 * 109.47052 * 178.18032 * 14 12 11 16 16 C 1.46500 * 120.00106 * 89.99980 * 15 14 12 17 17 C 1.36938 * 119.99888 * 269.99891 * 15 14 12 18 18 H 1.07996 * 120.00228 * 334.65683 * 17 15 14 19 19 C 1.38818 * 119.99816 * 154.65674 * 17 15 14 20 20 N 1.31618 * 119.99903 * 4.04078 * 19 17 15 21 21 Si 1.86800 * 119.99547 * 184.03812 * 19 17 15 22 22 H 1.48496 * 109.47372 * 90.00305 * 21 19 17 23 23 H 1.48506 * 109.46573 * 209.99724 * 21 19 17 24 24 H 1.48498 * 109.47266 * 329.99623 * 21 19 17 25 25 C 1.47427 * 125.64569 * 180.02562 * 9 7 6 26 26 C 1.40278 * 118.80357 * 0.27638 * 6 4 3 27 27 O 1.35428 * 119.79788 * 179.72954 * 26 6 4 28 28 N 1.31879 * 119.40432 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47073 * 90.00035 * 1 2 3 30 30 H 1.08998 * 109.46938 * 210.00127 * 1 2 3 31 31 H 1.09001 * 109.47270 * 330.00047 * 1 2 3 32 32 H 1.08000 * 120.27357 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47325 * 270.01679 * 5 4 3 34 34 H 1.08998 * 109.47072 * 30.02077 * 5 4 3 35 35 H 1.09007 * 109.46891 * 150.01784 * 5 4 3 36 36 H 1.09002 * 109.88482 * 298.39461 * 10 9 7 37 37 H 1.08994 * 109.88516 * 59.40578 * 10 9 7 38 38 H 1.09004 * 110.75423 * 219.49385 * 11 10 9 39 39 H 1.08993 * 110.70752 * 96.20379 * 11 10 9 40 40 H 1.08998 * 109.47259 * 58.17891 * 14 12 11 41 41 H 1.08998 * 109.46897 * 298.18086 * 14 12 11 42 42 H 1.08993 * 109.47281 * 264.48394 * 16 15 14 43 43 H 1.09002 * 109.46820 * 144.47774 * 16 15 14 44 44 H 1.09007 * 109.47076 * 24.47981 * 16 15 14 45 45 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 46 46 H 1.08994 * 110.37026 * 85.24511 * 25 9 7 47 47 H 1.09000 * 110.45682 * 322.97276 * 25 9 7 48 48 H 0.96695 * 114.00571 * 89.99726 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3407 2.5014 -0.0011 6 6 4.2356 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0005 8 8 6.3172 -0.1046 1.0524 9 7 6.3830 -0.1072 -1.1678 10 6 5.7771 -0.0849 -2.5072 11 6 6.9307 -0.1016 -3.5329 12 6 8.1323 0.4374 -2.7124 13 1 8.1250 1.5269 -2.6786 14 6 9.4572 -0.0820 -3.2743 15 7 10.5687 0.4807 -2.5035 16 6 11.0739 -0.2259 -1.3238 17 6 11.1353 1.6673 -2.8857 18 1 11.0806 1.9846 -3.9165 19 6 11.7802 2.4624 -1.9481 20 7 11.9166 2.0396 -0.7091 21 14 12.4543 4.1321 -2.4449 22 1 11.4108 5.1684 -2.2394 23 1 13.6418 4.4538 -1.6132 24 1 12.8464 4.1015 -3.8768 25 6 7.8490 -0.1639 -1.3130 26 6 3.4758 -1.2041 -0.0059 27 8 4.0992 -2.4063 -0.0115 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6411 2.1376 0.0004 33 1 4.5260 2.8135 -1.0289 34 1 3.7623 3.2689 0.5131 35 1 5.2917 2.3582 0.5121 36 1 5.1467 -0.9635 -2.6436 37 1 5.1827 0.8204 -2.6301 38 1 6.7105 0.5575 -4.3727 39 1 7.1244 -1.1170 -3.8785 40 1 9.5511 0.2166 -4.3184 41 1 9.4802 -1.1695 -3.2040 42 1 10.6009 0.1774 -0.4285 43 1 12.1536 -0.0933 -1.2556 44 1 10.8429 -1.2877 -1.4097 45 1 12.3668 2.5953 -0.0539 46 1 8.1952 -1.1963 -1.2663 47 1 8.3319 0.4327 -0.5390 48 1 4.2804 -2.7596 0.8702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664822808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:34 Heat of formation + Delta-G solvation = -15.366110 kcal Electronic energy + Delta-G solvation = -29532.568245 eV Core-core repulsion = 25588.592760 eV Total energy + Delta-G solvation = -3943.975486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14771 -39.45175 -37.59031 -37.42540 -35.31024 -34.41613 -32.32271 -31.93382 -30.61466 -28.94928 -28.43452 -27.79335 -26.17611 -25.34978 -23.76149 -22.88236 -21.69476 -21.10058 -19.78023 -19.50482 -18.63639 -17.44134 -17.38473 -16.64594 -16.15480 -15.70767 -15.57229 -14.73846 -14.62396 -14.38142 -14.07216 -13.73627 -13.55678 -13.48053 -13.26437 -13.25695 -12.95327 -12.70806 -12.65446 -12.32805 -12.29602 -12.22109 -12.05343 -11.84746 -11.75874 -11.42629 -10.99154 -10.78852 -10.71407 -10.48096 -10.24521 -10.21594 -10.03429 -9.88941 -9.81530 -9.76261 -9.50623 -9.03439 -8.49576 -8.42792 -6.72139 -5.71235 -3.18195 0.54937 0.84592 2.60454 3.03080 3.12080 3.37966 3.44164 3.45610 3.48818 4.17827 4.26910 4.44008 4.50413 4.72600 4.84869 4.91386 4.99414 5.07012 5.10935 5.18772 5.22395 5.31183 5.36330 5.43846 5.53059 5.55284 5.63655 5.67436 5.76157 5.82064 5.92235 6.00620 6.01871 6.14771 6.18719 6.24496 6.34862 6.48866 6.60337 6.70460 6.85551 6.97288 7.20988 7.52589 7.59116 7.67476 7.79382 7.89956 8.21844 8.44464 9.27858 9.89175 10.39130 11.33223 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.002968 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.344581 B = 9431.472146 C = 9861.819869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.186 4.186 4 C 0.012 3.988 5 C -0.127 4.127 6 C -0.190 4.190 7 C 0.585 3.415 8 O -0.533 6.533 9 N -0.602 5.602 10 C 0.104 3.896 11 C -0.129 4.129 12 C -0.116 4.116 13 H 0.085 0.915 14 C 0.164 3.836 15 N -0.605 5.605 16 C 0.165 3.835 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.006 3.994 20 N -0.906 5.906 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.121 3.879 26 C 0.353 3.647 27 O -0.476 6.476 28 N -0.507 5.507 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.026 0.974 43 H 0.052 0.948 44 H -0.010 1.010 45 H 0.252 0.748 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.262 -3.453 -0.895 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.206 4.206 4 C 0.004 3.996 5 C -0.183 4.183 6 C -0.197 4.197 7 C 0.372 3.628 8 O -0.410 6.410 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.167 4.167 12 C -0.138 4.138 13 H 0.103 0.897 14 C 0.036 3.964 15 N -0.327 5.327 16 C 0.021 3.979 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.192 4.192 20 N -0.551 5.551 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.000 4.000 26 C 0.173 3.827 27 O -0.283 6.283 28 N -0.227 5.227 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.009 0.991 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -22.256 -4.160 -0.701 22.652 hybrid contribution 0.770 1.590 0.335 1.798 sum -21.486 -2.570 -0.365 21.642 Atomic orbital electron populations 1.20783 0.88171 1.03821 1.03490 1.21152 0.96926 0.87078 0.92276 1.21775 0.93574 0.99608 1.05674 1.20299 0.93640 0.94292 0.91379 1.20968 1.00660 0.92926 1.03751 1.20922 0.95078 0.94090 1.09598 1.17344 0.85641 0.76769 0.83085 1.90843 1.69208 1.50499 1.30459 1.48558 1.08709 1.71131 1.05051 1.22010 0.96608 1.00897 0.82449 1.22712 0.94622 1.02168 0.97216 1.23241 0.96142 1.01496 0.92941 0.89657 1.20768 0.85293 0.95357 0.94996 1.43948 1.33941 1.23711 1.31122 1.20909 0.99298 0.88874 0.88808 1.19180 1.30829 0.95597 0.92889 0.91440 1.25162 1.00904 0.97912 0.95257 1.70084 1.46193 1.36378 1.02465 0.86303 0.78103 0.84827 0.77619 1.21477 1.21741 1.20586 1.22373 0.77462 1.00934 0.99272 1.18976 0.86292 0.84434 0.92967 1.84684 1.76680 1.32590 1.34376 1.67042 1.09080 1.30419 1.16152 0.89934 0.90175 0.90247 0.83829 0.89613 0.90095 0.90198 0.91897 0.92148 0.90318 0.90712 0.93247 0.94230 0.95522 0.92975 0.99143 0.93722 0.91860 0.89589 0.73460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 2 C 0.16 1.64 6.78 -82.53 -0.56 1.09 16 3 C -0.19 -1.76 9.41 -39.50 -0.37 -2.13 16 4 C 0.01 0.14 5.95 -103.93 -0.62 -0.48 16 5 C -0.13 -1.37 9.69 36.00 0.35 -1.02 16 6 C -0.19 -2.71 4.84 -104.69 -0.51 -3.22 16 7 C 0.59 10.06 5.45 -12.47 -0.07 9.99 16 8 O -0.53 -11.12 17.36 5.29 0.09 -11.03 16 9 N -0.60 -9.91 3.33 -171.71 -0.57 -10.48 16 10 C 0.10 1.39 6.47 -3.04 -0.02 1.37 16 11 C -0.13 -1.69 6.42 -24.87 -0.16 -1.85 16 12 C -0.12 -2.02 3.27 -88.46 -0.29 -2.31 16 13 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 14 C 0.16 3.18 5.21 -4.04 -0.02 3.16 16 15 N -0.60 -14.82 2.88 -181.12 -0.52 -15.34 16 16 C 0.17 4.11 8.25 59.85 0.49 4.60 16 17 C -0.26 -6.86 9.67 -15.06 -0.15 -7.00 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C 0.01 0.16 5.38 -17.43 -0.09 0.07 16 20 N -0.91 -26.31 10.13 55.49 0.56 -25.75 16 21 Si 0.90 21.68 29.56 -169.99 -5.02 16.66 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.12 2.24 5.58 -2.52 -0.01 2.22 16 26 C 0.35 4.82 7.77 -16.61 -0.13 4.70 16 27 O -0.48 -6.17 13.01 -17.97 -0.23 -6.41 16 28 N -0.51 -6.44 10.28 -9.21 -0.09 -6.53 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.08 1.09 7.19 -51.93 -0.37 0.72 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 40 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 42 H 0.03 0.72 7.01 -51.93 -0.36 0.35 16 43 H 0.05 1.41 7.03 -51.93 -0.37 1.05 16 44 H -0.01 -0.22 7.83 -51.92 -0.41 -0.63 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 47 H 0.09 1.93 7.61 -51.93 -0.40 1.53 16 48 H 0.41 3.68 9.06 45.56 0.41 4.09 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -33.91 393.04 -8.57 -42.47 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.91 Total: 1.58 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -1.79 Total: 8.90 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.63 Total: -58.10 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.14 Total: -17.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.91 -8.57 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664822808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.108 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds