Wall clock time and date at job start Tue Mar 31 2020 17:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38359 * 119.40781 * 2 1 4 4 C 1.38335 * 119.45541 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.82291 * 179.97438 * 4 3 2 6 6 C 1.39989 * 118.35157 * 0.02562 * 4 3 2 7 7 C 1.47525 * 120.59759 * 180.02562 * 6 4 3 8 8 O 1.21582 * 120.00188 * 89.99418 * 7 6 4 9 9 N 1.34775 * 119.99803 * 269.99602 * 7 6 4 10 10 C 1.47027 * 125.64794 * 0.02732 * 9 7 6 11 11 C 1.54322 * 107.27109 * 181.01242 * 10 9 7 12 12 C 1.55158 * 102.94240 * 22.19190 * 11 10 9 13 13 H 1.08995 * 111.01016 * 82.60960 * 12 11 10 14 14 C 1.53000 * 111.00442 * 206.42544 * 12 11 10 15 15 N 1.46503 * 109.47365 * 184.99671 * 14 12 11 16 16 C 1.46496 * 119.99702 * 89.99578 * 15 14 12 17 17 C 1.36934 * 120.00294 * 270.00387 * 15 14 12 18 18 H 1.08006 * 119.99795 * 22.83030 * 17 15 14 19 19 C 1.38808 * 120.00148 * 202.83980 * 17 15 14 20 20 N 1.31623 * 120.00217 * 13.24178 * 19 17 15 21 21 Si 1.86800 * 120.00106 * 193.24708 * 19 17 15 22 22 H 1.48494 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47338 * 120.00131 * 21 19 17 24 24 H 1.48504 * 109.47246 * 239.99873 * 21 19 17 25 25 C 1.47421 * 125.64976 * 179.97438 * 9 7 6 26 26 C 1.40279 * 118.80400 * 0.27024 * 6 4 3 27 27 O 1.35423 * 119.79802 * 179.72922 * 26 6 4 28 28 N 1.31878 * 119.40557 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47496 * 89.99975 * 1 2 3 30 30 H 1.08997 * 109.47439 * 210.00033 * 1 2 3 31 31 H 1.09003 * 109.46963 * 330.00125 * 1 2 3 32 32 H 1.07994 * 120.27030 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.47035 * 270.02628 * 5 4 3 34 34 H 1.09000 * 109.46922 * 30.02489 * 5 4 3 35 35 H 1.08995 * 109.46927 * 150.02716 * 5 4 3 36 36 H 1.08997 * 109.88348 * 61.59494 * 10 9 7 37 37 H 1.08996 * 109.88290 * 300.42718 * 10 9 7 38 38 H 1.09001 * 110.72054 * 263.82866 * 11 10 9 39 39 H 1.08999 * 110.87666 * 140.62575 * 11 10 9 40 40 H 1.09002 * 109.47271 * 65.00076 * 14 12 11 41 41 H 1.09003 * 109.47449 * 304.99847 * 14 12 11 42 42 H 1.09009 * 109.46916 * 95.13417 * 16 15 14 43 43 H 1.09003 * 109.47135 * 215.12524 * 16 15 14 44 44 H 1.09000 * 109.47580 * 335.13161 * 16 15 14 45 45 H 0.97000 * 120.00147 * 179.97438 * 20 19 17 46 46 H 1.09005 * 110.36432 * 37.07822 * 25 9 7 47 47 H 1.09003 * 110.36900 * 274.75967 * 25 9 7 48 48 H 0.96700 * 114.00140 * 89.99914 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.3408 2.5012 0.0000 6 6 4.2355 -0.0250 0.0005 7 6 5.7097 -0.0816 0.0016 8 8 6.3164 -0.1052 1.0550 9 7 6.3839 -0.1070 -1.1650 10 6 5.7791 -0.0826 -2.5050 11 6 6.9314 -0.1528 -3.5291 12 6 8.0878 -0.7829 -2.7086 13 1 7.9972 -1.8686 -2.6758 14 6 9.4488 -0.3657 -3.2693 15 7 10.5112 -1.0710 -2.5479 16 6 10.9855 -2.3707 -3.0296 17 6 11.0607 -0.5155 -1.4234 18 1 10.5059 0.2180 -0.8571 19 6 12.3308 -0.8949 -1.0115 20 7 13.1090 -1.5790 -1.8232 21 14 12.9356 -0.4347 0.6949 22 1 11.8786 0.3288 1.4055 23 1 13.2527 -1.6690 1.4573 24 1 14.1566 0.4025 0.5783 25 6 7.8500 -0.1627 -1.3091 26 6 3.4757 -1.2041 -0.0058 27 8 4.0990 -2.4064 -0.0115 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6412 2.1375 -0.0004 33 1 4.5267 2.8130 -1.0279 34 1 3.7620 3.2690 0.5135 35 1 5.2913 2.3582 0.5138 36 1 5.2176 0.8415 -2.6415 37 1 5.1197 -0.9415 -2.6296 38 1 7.2023 0.8452 -3.8737 39 1 6.6641 -0.7907 -4.3715 40 1 9.5783 0.7096 -3.1464 41 1 9.4987 -0.6190 -4.3283 42 1 11.8663 -2.2268 -3.6555 43 1 11.2435 -3.0014 -2.1789 44 1 10.1998 -2.8508 -3.6129 45 1 13.9967 -1.8438 -1.5354 46 1 8.2835 -0.7958 -0.5349 47 1 8.2743 0.8403 -1.2616 48 1 4.2796 -2.7600 0.8702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664822809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:37 Heat of formation + Delta-G solvation = -16.896100 kcal Electronic energy + Delta-G solvation = -29439.253634 eV Core-core repulsion = 25495.211803 eV Total energy + Delta-G solvation = -3944.041831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.17760 -39.49016 -37.60193 -37.46025 -35.31793 -34.46345 -32.34562 -31.95681 -30.60766 -29.02909 -28.52998 -27.84313 -25.82057 -25.63947 -23.78863 -22.94865 -21.74449 -21.19279 -19.75603 -19.49711 -18.64393 -17.59045 -17.32805 -16.82809 -15.98693 -15.71450 -15.54176 -14.80918 -14.59824 -14.46645 -14.13383 -13.70341 -13.59925 -13.39830 -13.30418 -13.28651 -13.00315 -12.91491 -12.72575 -12.44408 -12.27597 -12.21627 -12.09846 -11.86247 -11.76673 -11.32746 -11.17870 -10.79883 -10.65156 -10.39594 -10.37156 -10.28194 -10.13220 -9.86630 -9.82100 -9.74153 -9.52977 -9.05994 -8.50855 -8.46241 -6.70931 -5.68600 -3.15339 0.52242 0.81062 2.56686 3.00265 3.09943 3.41853 3.46599 3.49920 3.53457 4.14670 4.21705 4.40590 4.54117 4.68919 4.79020 4.87109 4.94577 5.02516 5.07880 5.11311 5.19945 5.24649 5.29206 5.44310 5.50540 5.52166 5.56496 5.63826 5.72303 5.73832 5.85815 5.94087 5.98412 6.12436 6.15091 6.20930 6.37159 6.47918 6.53082 6.65461 6.78438 6.92750 7.21361 7.40953 7.57281 7.64129 7.76069 7.85552 8.18420 8.43285 9.27467 9.91028 10.39447 11.36056 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.002982 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.775514 B = 9387.151075 C = 9827.703182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.164 3.836 3 C -0.187 4.187 4 C 0.010 3.990 5 C -0.125 4.125 6 C -0.191 4.191 7 C 0.585 3.415 8 O -0.533 6.533 9 N -0.604 5.604 10 C 0.104 3.896 11 C -0.128 4.128 12 C -0.116 4.116 13 H 0.078 0.922 14 C 0.163 3.837 15 N -0.602 5.602 16 C 0.162 3.838 17 C -0.252 4.252 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.122 3.878 26 C 0.354 3.646 27 O -0.475 6.475 28 N -0.506 5.506 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.031 0.969 43 H 0.040 0.960 44 H -0.003 1.003 45 H 0.251 0.749 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.009 6.058 -0.806 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.207 4.207 4 C 0.002 3.998 5 C -0.182 4.182 6 C -0.197 4.197 7 C 0.371 3.629 8 O -0.410 6.410 9 N -0.336 5.336 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.138 4.138 13 H 0.096 0.904 14 C 0.034 3.966 15 N -0.324 5.324 16 C 0.018 3.982 17 C -0.381 4.381 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.553 5.553 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.001 3.999 26 C 0.175 3.825 27 O -0.282 6.282 28 N -0.227 5.227 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.015 0.985 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -24.939 5.214 -0.738 25.489 hybrid contribution 0.889 0.663 1.382 1.771 sum -24.051 5.877 0.643 24.767 Atomic orbital electron populations 1.20787 0.88172 1.03836 1.03503 1.21160 0.96942 0.87086 0.92201 1.21760 0.93560 0.99587 1.05780 1.20267 0.93645 0.94216 0.91697 1.20950 1.00614 0.93019 1.03576 1.20924 0.95086 0.94099 1.09626 1.17348 0.85625 0.76797 0.83102 1.90847 1.69269 1.50442 1.30412 1.48612 1.08828 1.71172 1.05018 1.21997 0.96643 1.00882 0.82436 1.22673 0.94704 1.02050 0.97182 1.23220 0.96915 1.00298 0.93394 0.90368 1.20657 0.86016 0.95983 0.93925 1.43912 1.40494 1.18512 1.29500 1.20788 0.94436 0.85640 0.97384 1.19217 0.96775 1.21790 1.00361 0.91265 1.25002 0.95736 1.00554 0.98323 1.70080 1.08414 1.42678 1.34081 0.86260 0.78517 0.77797 0.84524 1.20136 1.21630 1.21801 1.22394 0.77145 1.01358 0.98963 1.19003 0.86272 0.84538 0.92702 1.84698 1.76625 1.32502 1.34424 1.67053 1.09119 1.30419 1.16061 0.89919 0.90149 0.90256 0.83858 0.89732 0.90123 0.90312 0.92174 0.91792 0.90571 0.90339 0.93204 0.93966 0.95101 0.94147 0.98452 0.93882 0.89555 0.91337 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.27 16 2 C 0.16 1.59 6.78 -82.53 -0.56 1.03 16 3 C -0.19 -1.64 9.41 -39.50 -0.37 -2.01 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -1.16 9.69 36.01 0.35 -0.81 16 6 C -0.19 -2.62 4.84 -104.69 -0.51 -3.13 16 7 C 0.59 9.75 5.45 -12.48 -0.07 9.68 16 8 O -0.53 -10.88 17.36 5.29 0.09 -10.79 16 9 N -0.60 -9.56 3.33 -171.75 -0.57 -10.13 16 10 C 0.10 1.32 6.47 -3.06 -0.02 1.30 16 11 C -0.13 -1.59 6.42 -24.90 -0.16 -1.75 16 12 C -0.12 -1.93 3.26 -88.47 -0.29 -2.22 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 14 C 0.16 3.14 5.17 -4.04 -0.02 3.12 16 15 N -0.60 -14.78 2.91 -181.11 -0.53 -15.30 16 16 C 0.16 3.98 8.98 59.84 0.54 4.51 16 17 C -0.25 -6.83 9.16 -15.06 -0.14 -6.96 16 18 H 0.07 1.85 7.13 -52.48 -0.37 1.47 16 19 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 20 N -0.91 -26.65 10.71 55.49 0.59 -26.06 16 21 Si 0.90 22.40 29.57 -169.99 -5.03 17.37 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.12 2.21 5.23 -2.53 -0.01 2.20 16 26 C 0.35 4.83 7.77 -16.61 -0.13 4.70 16 27 O -0.47 -6.37 13.01 -17.96 -0.23 -6.61 16 28 N -0.51 -6.37 10.28 -9.21 -0.09 -6.46 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.08 0.93 7.19 -51.93 -0.37 0.55 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 41 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.03 0.82 7.34 -51.92 -0.38 0.44 16 43 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 44 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.09 1.86 8.04 -51.93 -0.42 1.45 16 47 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 48 H 0.41 3.92 9.06 45.56 0.41 4.33 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -34.61 393.75 -8.50 -43.11 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.94 Total: 0.09 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.73 Total: 8.85 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.60 Total: -57.96 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.14 Total: -17.39 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.61 -8.50 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664822809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.218 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds