Wall clock time and date at job start Tue Mar 31 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40196 * 120.36381 * 2 1 4 4 C 1.35348 * 119.94896 * 179.76841 * 3 2 1 5 5 N 1.35771 * 120.70086 * 0.50793 * 4 3 2 6 6 C 1.46495 * 119.62521 * 179.76104 * 5 4 3 7 7 C 1.50694 * 109.47231 * 269.72637 * 6 5 4 8 8 O 1.21284 * 120.00193 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00031 * 185.12079 * 9 7 6 11 11 C 1.52997 * 109.47321 * 298.23642 * 10 9 7 12 12 C 1.52996 * 109.47100 * 58.23803 * 10 9 7 13 13 N 1.46504 * 109.47160 * 59.99709 * 12 10 9 14 14 C 1.36937 * 120.00214 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00045 * 0.02562 * 14 13 12 16 16 C 1.38808 * 120.00218 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99850 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99992 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46891 * 90.00462 * 18 16 14 20 20 H 1.48499 * 109.47395 * 210.00188 * 18 16 14 21 21 H 1.48499 * 109.47403 * 330.00628 * 18 16 14 22 22 C 1.53001 * 109.47160 * 178.23627 * 10 9 7 23 23 C 1.53002 * 117.49836 * 132.02548 * 22 10 9 24 24 C 1.53000 * 60.00177 * 252.51101 * 23 22 10 25 25 C 1.34655 * 120.74620 * 359.48213 * 5 4 3 26 26 O 1.22061 * 119.98474 * 180.27642 * 25 5 4 27 27 C 1.36399 * 120.37291 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47508 * 269.98133 * 1 2 3 29 29 H 1.08995 * 109.47706 * 29.98194 * 1 2 3 30 30 H 1.09002 * 109.46983 * 149.98540 * 1 2 3 31 31 H 1.08005 * 120.02957 * 0.03998 * 3 2 1 32 32 H 1.07999 * 119.65585 * 180.26693 * 4 3 2 33 33 H 1.09006 * 109.46957 * 149.72752 * 6 5 4 34 34 H 1.09004 * 109.47229 * 29.72685 * 6 5 4 35 35 H 0.96999 * 119.99870 * 5.12255 * 9 7 6 36 36 H 1.09001 * 109.47583 * 300.00024 * 11 10 9 37 37 H 1.08997 * 109.47283 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47182 * 60.00266 * 11 10 9 39 39 H 1.08997 * 109.47269 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47189 * 299.99602 * 12 10 9 41 41 H 0.96999 * 120.00092 * 0.02562 * 13 12 10 42 42 H 0.96998 * 119.99680 * 179.97438 * 17 16 14 43 43 H 1.09000 * 115.55084 * 277.73904 * 22 10 9 44 44 H 1.09000 * 117.49900 * 0.02562 * 23 22 10 45 45 H 1.09000 * 117.49393 * 145.02647 * 23 22 10 46 46 H 1.09000 * 117.50307 * 252.50740 * 24 23 22 47 47 H 1.09010 * 117.49611 * 107.48688 * 24 23 22 48 48 H 1.08005 * 120.34377 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1999 0.0047 5 7 4.2538 0.0275 -0.0008 6 6 5.7187 0.0444 -0.0008 7 6 6.2210 0.0501 -1.4216 8 8 5.4330 0.0405 -2.3435 9 7 7.5461 0.0649 -1.6679 10 6 8.0340 0.1837 -3.0441 11 6 7.5538 -1.0175 -3.8610 12 6 7.4943 1.4727 -3.6670 13 7 7.9542 2.6229 -2.8848 14 6 7.5942 3.8911 -3.2555 15 1 6.9710 4.0433 -4.1243 16 6 8.0303 4.9809 -2.5146 17 7 7.6839 6.1997 -2.8707 18 14 9.1076 4.7176 -1.0115 19 1 10.5361 4.7368 -1.4169 20 1 8.8578 5.8012 -0.0274 21 1 8.7856 3.4054 -0.3954 22 6 9.5636 0.2201 -3.0415 23 6 10.2936 -0.6975 -4.0244 24 6 10.2988 -1.0199 -2.5288 25 6 3.6017 -1.1506 -0.0007 26 8 4.2313 -2.1963 -0.0007 27 6 2.1966 -1.1768 -0.0005 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6821 2.1487 0.0007 32 1 4.1102 2.1345 0.0091 33 1 6.0923 -0.8413 0.5131 34 1 6.0717 0.9386 0.5130 35 1 8.1766 -0.0031 -0.9339 36 1 7.9382 -1.9358 -3.4172 37 1 7.9164 -0.9288 -4.8850 38 1 6.4641 -1.0433 -3.8629 39 1 7.8570 1.5609 -4.6911 40 1 6.4046 1.4468 -3.6689 41 1 8.5142 2.4863 -2.1047 42 1 7.9884 6.9613 -2.3528 43 1 10.0104 1.1922 -2.8331 44 1 9.6843 -1.3267 -4.6731 45 1 11.2210 -0.3290 -4.4629 46 1 11.2295 -0.8636 -1.9834 47 1 9.6927 -1.8616 -2.1933 48 1 1.6684 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666026067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:43 Heat of formation + Delta-G solvation = 12.640923 kcal Electronic energy + Delta-G solvation = -29879.711970 eV Core-core repulsion = 25936.950961 eV Total energy + Delta-G solvation = -3942.761009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49473 -40.07800 -37.92746 -36.99469 -35.33393 -34.80755 -33.63658 -31.64802 -30.68166 -29.97260 -29.26262 -26.91238 -26.11517 -23.77524 -23.70285 -22.36536 -21.91655 -21.75725 -20.43892 -19.07608 -17.78649 -17.73202 -17.52560 -17.25811 -16.04941 -15.93652 -15.31487 -15.13799 -14.97879 -14.65801 -14.27909 -14.18841 -14.09692 -13.73194 -13.42773 -13.23845 -12.89122 -12.81732 -12.56023 -12.38339 -12.33226 -12.18352 -12.00855 -11.82839 -11.70564 -11.64367 -11.17097 -11.04435 -10.96108 -10.82704 -10.35262 -10.28682 -10.09984 -9.95592 -9.92630 -9.62804 -9.37387 -8.89583 -8.78441 -7.96232 -7.22258 -5.79371 -3.13580 0.81585 1.90163 2.45584 2.76349 3.20336 3.24500 3.30019 3.37121 3.67837 3.95704 4.51392 4.52727 4.58266 4.61880 4.68283 4.76335 4.92569 4.95292 5.03304 5.03553 5.18465 5.19887 5.26124 5.28842 5.36177 5.48847 5.51461 5.57481 5.66067 5.66616 5.82430 5.88532 5.93721 5.94216 6.03283 6.08244 6.14143 6.30495 6.33734 6.40074 6.50010 6.54380 6.75798 6.93873 7.07487 7.65873 7.98656 8.05782 8.36794 8.39917 9.18951 9.90681 10.12172 11.39528 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009989 B = 0.004404 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.448133 B = 6356.948365 C = 8197.110668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.019 3.981 3 C -0.233 4.233 4 C 0.153 3.847 5 N -0.477 5.477 6 C 0.068 3.932 7 C 0.511 3.489 8 O -0.517 6.517 9 N -0.711 5.711 10 C 0.201 3.799 11 C -0.163 4.163 12 C 0.149 3.851 13 N -0.750 5.750 14 C -0.236 4.236 15 H 0.089 0.911 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.882 3.118 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.280 1.280 22 C -0.156 4.156 23 C -0.168 4.168 24 C -0.183 4.183 25 C 0.523 3.477 26 O -0.559 6.559 27 C -0.255 4.255 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.397 0.603 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.052 0.948 41 H 0.358 0.642 42 H 0.258 0.742 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 -14.295 7.752 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.015 3.985 3 C -0.256 4.256 4 C 0.026 3.974 5 N -0.187 5.187 6 C -0.058 4.058 7 C 0.296 3.704 8 O -0.392 6.392 9 N -0.363 5.363 10 C 0.115 3.885 11 C -0.221 4.221 12 C 0.022 3.978 13 N -0.396 5.396 14 C -0.366 4.366 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.713 3.287 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.175 4.175 23 C -0.206 4.206 24 C -0.220 4.220 25 C 0.326 3.674 26 O -0.443 6.443 27 C -0.277 4.277 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.231 0.769 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.191 0.809 42 H 0.069 0.931 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.565 -14.775 6.937 17.245 hybrid contribution 1.262 0.236 1.418 1.913 sum -4.303 -14.540 8.354 17.312 Atomic orbital electron populations 1.20921 0.90498 1.03559 1.02906 1.20203 0.96669 0.92707 0.88905 1.20530 0.92354 0.98928 1.13763 1.22041 0.93723 0.89686 0.91965 1.44993 1.07188 1.07263 1.59294 1.21828 0.79800 1.07032 0.97113 1.20365 0.82908 0.76452 0.90726 1.90693 1.55248 1.48077 1.45166 1.45870 1.06241 1.74890 1.09280 1.20103 0.90628 0.96636 0.81103 1.22277 1.03843 0.96414 0.99548 1.21022 0.98622 0.84151 0.94027 1.42608 1.62129 1.02582 1.32279 1.19079 1.25941 0.81445 1.10095 0.89316 1.24642 1.00678 0.95100 0.98863 1.69698 1.49989 0.97290 1.41383 0.86592 0.81304 0.76650 0.84140 1.21175 1.21808 1.20696 1.22547 0.92948 0.96093 1.05864 1.23062 1.02208 1.02781 0.92513 1.22973 1.02278 0.99340 0.97399 1.17044 0.89314 0.82387 0.78627 1.90922 1.69239 1.30347 1.53767 1.21845 0.92277 0.99377 1.14190 0.90232 0.90681 0.90934 0.83646 0.81760 0.85674 0.86036 0.76934 0.92812 0.91479 0.90185 0.94812 0.93040 0.80926 0.93141 0.86564 0.88004 0.88714 0.88874 0.88766 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.03 36.00 0.36 -0.55 16 2 C 0.02 0.21 5.89 -104.55 -0.62 -0.41 16 3 C -0.23 -2.52 9.71 -39.88 -0.39 -2.91 16 4 C 0.15 1.85 10.28 -16.84 -0.17 1.68 16 5 N -0.48 -6.65 2.07 -121.07 -0.25 -6.90 16 6 C 0.07 0.86 5.82 -5.20 -0.03 0.83 16 7 C 0.51 8.12 7.30 -10.99 -0.08 8.04 16 8 O -0.52 -10.09 12.67 5.55 0.07 -10.02 16 9 N -0.71 -10.17 4.73 -47.61 -0.23 -10.39 16 10 C 0.20 3.10 0.54 -131.82 -0.07 3.03 16 11 C -0.16 -2.36 7.06 37.16 0.26 -2.10 16 12 C 0.15 2.99 4.94 -4.04 -0.02 2.97 16 13 N -0.75 -17.14 4.84 -59.91 -0.29 -17.43 16 14 C -0.24 -6.55 10.47 -15.06 -0.16 -6.70 16 15 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 16 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 17 N -0.94 -28.84 13.97 55.49 0.78 -28.07 16 18 Si 0.88 21.07 27.73 -169.99 -4.71 16.36 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.06 6.52 56.52 0.37 -5.69 16 22 C -0.16 -2.15 4.87 -90.62 -0.44 -2.59 16 23 C -0.17 -1.95 9.62 -26.73 -0.26 -2.21 16 24 C -0.18 -1.98 9.71 -26.73 -0.26 -2.24 16 25 C 0.52 8.31 7.40 -15.45 -0.11 8.20 16 26 O -0.56 -10.55 16.64 4.86 0.08 -10.47 16 27 C -0.26 -3.38 9.65 -39.38 -0.38 -3.76 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.17 1.73 8.03 -52.49 -0.42 1.31 16 33 H 0.13 1.45 7.39 -51.93 -0.38 1.06 16 34 H 0.12 1.20 8.01 -51.93 -0.42 0.79 16 35 H 0.40 4.62 8.38 -40.82 -0.34 4.28 16 36 H 0.05 0.70 7.00 -51.93 -0.36 0.34 16 37 H 0.07 0.89 6.81 -51.93 -0.35 0.54 16 38 H 0.08 1.37 6.13 -51.93 -0.32 1.05 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 1.16 6.22 -51.93 -0.32 0.84 16 41 H 0.36 7.78 4.49 -40.82 -0.18 7.60 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.12 1.85 7.09 -51.93 -0.37 1.48 16 44 H 0.10 1.12 5.88 -51.93 -0.31 0.82 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 0.98 7.39 -51.92 -0.38 0.60 16 48 H 0.14 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -36.40 386.24 -8.32 -44.73 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.13 Total: 15.12 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.46 Total: 1.26 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.01 Total: -62.79 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.15 Total: -20.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.40 -8.32 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666026067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.369 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds