Wall clock time and date at job start Tue Mar 31 2020 17:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35686 * 116.99876 * 2 1 4 4 C 1.38897 * 119.62564 * 180.02562 * 3 2 1 5 5 C 1.39570 * 118.94482 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.88669 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00358 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99808 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00088 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47158 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46096 * 60.03186 * 10 9 8 12 12 C 1.53040 * 109.46104 * 300.07175 * 10 9 8 13 13 C 1.53195 * 109.31019 * 178.61435 * 12 10 9 14 14 N 1.46925 * 108.77734 * 54.63425 * 13 12 10 15 15 C 1.36935 * 120.63166 * 126.41004 * 14 13 12 16 16 H 1.08001 * 120.00175 * 207.65928 * 15 14 13 17 17 C 1.38819 * 120.00028 * 27.66016 * 15 14 13 18 18 N 1.31623 * 119.99603 * 17.37696 * 17 15 14 19 19 Si 1.86794 * 120.00158 * 197.37501 * 17 15 14 20 20 H 1.48504 * 109.47224 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46810 * 119.99740 * 19 17 15 22 22 H 1.48495 * 109.47374 * 240.00148 * 19 17 15 23 23 C 1.46926 * 118.73801 * 306.38978 * 14 13 12 24 24 C 1.53044 * 109.45935 * 180.02562 * 10 9 8 25 25 C 1.39960 * 118.22108 * 359.97438 * 5 4 3 26 26 C 1.37978 * 119.13292 * 0.02562 * 25 5 4 27 27 N 1.31909 * 120.98049 * 359.97438 * 26 25 5 28 28 H 1.09000 * 109.47457 * 60.00207 * 1 2 3 29 29 H 1.09002 * 109.46568 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47362 * 299.99815 * 1 2 3 31 31 H 1.08002 * 120.52117 * 359.95010 * 4 3 2 32 32 H 0.97006 * 120.00102 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.47189 * 300.00463 * 9 8 6 34 34 H 1.09000 * 109.46708 * 60.00392 * 9 8 6 35 35 H 1.08997 * 109.47116 * 59.99521 * 11 10 9 36 36 H 1.08993 * 109.46958 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.46678 * 300.00179 * 11 10 9 38 38 H 1.09002 * 109.49382 * 298.55989 * 12 10 9 39 39 H 1.09000 * 109.49833 * 58.66397 * 12 10 9 40 40 H 1.09004 * 109.58717 * 294.84543 * 13 12 10 41 41 H 1.09000 * 109.58572 * 174.41862 * 13 12 10 42 42 H 0.97001 * 119.99684 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.58709 * 293.81739 * 23 14 13 44 44 H 1.09002 * 109.70347 * 173.46679 * 23 14 13 45 45 H 1.09003 * 109.49852 * 301.33662 * 24 10 9 46 46 H 1.08997 * 109.49488 * 61.43594 * 24 10 9 47 47 H 1.07999 * 120.43733 * 179.72455 * 25 5 4 48 48 H 1.08005 * 119.51421 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 -0.0005 5 6 4.0512 2.5237 -0.0011 6 6 5.5282 2.6417 -0.0022 7 8 6.2177 1.6412 -0.0023 8 7 6.1069 3.8589 -0.0033 9 6 7.5672 3.9756 -0.0038 10 6 7.9606 5.4542 -0.0056 11 6 7.3957 6.1335 1.2435 12 6 7.3926 6.1314 -1.2550 13 6 7.7591 7.6188 -1.2359 14 7 9.2157 7.7452 -1.0904 15 6 9.9435 8.4906 -1.9790 16 1 10.9796 8.2491 -2.1650 17 6 9.3497 9.5566 -2.6408 18 7 8.2256 10.0692 -2.1867 19 14 10.1458 10.2635 -4.1756 20 1 11.3926 9.5149 -4.4762 21 1 9.2078 10.1420 -5.3205 22 1 10.4695 11.6952 -3.9508 23 6 9.8764 7.0569 0.0270 24 6 9.4862 5.5759 -0.0069 25 6 3.2393 3.6637 -0.0016 26 6 1.8679 3.5116 -0.0010 27 7 1.3177 2.3127 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0230 0.3684 -0.0001 32 1 5.5565 4.6577 -0.0029 33 1 7.9707 3.4930 0.8862 34 1 7.9700 3.4918 -0.8937 35 1 7.7995 5.6510 2.1336 36 1 7.6763 7.1867 1.2426 37 1 6.3092 6.0465 1.2444 38 1 7.8139 5.6644 -2.1452 39 1 6.3080 6.0241 -1.2657 40 1 7.2643 8.1063 -0.3958 41 1 7.4434 8.0849 -2.1692 42 1 7.8104 10.8139 -2.6494 43 1 9.5543 7.4986 0.9700 44 1 10.9578 7.1522 -0.0705 45 1 9.8921 5.0730 0.8710 46 1 9.8872 5.1141 -0.9091 47 1 3.6803 4.6495 0.0024 48 1 1.2355 4.3871 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671843467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:45 Heat of formation + Delta-G solvation = -16.691756 kcal Electronic energy + Delta-G solvation = -28720.121938 eV Core-core repulsion = 24776.088968 eV Total energy + Delta-G solvation = -3944.032970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.14516 -39.90037 -38.62128 -37.91363 -35.19449 -33.46867 -32.75738 -31.21005 -30.75906 -29.97550 -27.71960 -27.20848 -26.97266 -24.76166 -23.68615 -23.58493 -22.35802 -21.00595 -20.62183 -19.02404 -18.02862 -17.60606 -16.84213 -16.44082 -16.37263 -16.07877 -15.69755 -15.37982 -14.88811 -14.55169 -14.47878 -14.18938 -14.02566 -13.88244 -13.71338 -13.50829 -13.38863 -12.86154 -12.72778 -12.49341 -12.08907 -12.06420 -11.57536 -11.52023 -11.35064 -11.22855 -10.81844 -10.73563 -10.60967 -10.46113 -10.25314 -10.24480 -10.20418 -9.93342 -9.84528 -9.56440 -9.46155 -9.08922 -8.90582 -8.47897 -6.68799 -5.82169 -3.23272 0.39444 0.78664 2.58510 2.69566 3.10113 3.34846 3.43405 3.45417 3.52721 3.93410 4.31587 4.47481 4.60296 4.68816 4.72522 4.92540 4.97292 5.00342 5.10673 5.16970 5.26392 5.34143 5.37480 5.45226 5.48132 5.70056 5.70925 5.78396 5.86454 5.93760 6.02709 6.04562 6.09216 6.25955 6.33027 6.43265 6.48489 6.55473 6.64704 6.73521 6.82658 6.83829 6.96074 7.31301 7.36471 7.42725 7.62550 7.77733 8.01339 8.42231 9.18963 9.82530 10.38766 11.26283 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.002364 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.921381 B =11841.403823 C =12589.146075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.317 3.683 4 C -0.133 4.133 5 C -0.049 4.049 6 C 0.555 3.445 7 O -0.531 6.531 8 N -0.709 5.709 9 C 0.128 3.872 10 C -0.064 4.064 11 C -0.143 4.143 12 C -0.130 4.130 13 C 0.171 3.829 14 N -0.591 5.591 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.146 3.854 24 C -0.120 4.120 25 C -0.180 4.180 26 C 0.140 3.860 27 N -0.528 5.528 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.154 0.846 32 H 0.403 0.597 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.021 0.979 41 H 0.086 0.914 42 H 0.252 0.748 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.144 0.856 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 -14.718 6.617 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.138 3.862 4 C -0.155 4.155 5 C -0.060 4.060 6 C 0.340 3.660 7 O -0.408 6.408 8 N -0.362 5.362 9 C 0.005 3.995 10 C -0.065 4.065 11 C -0.200 4.200 12 C -0.170 4.170 13 C 0.045 3.955 14 N -0.314 5.314 15 C -0.379 4.379 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.019 3.981 24 C -0.160 4.160 25 C -0.201 4.201 26 C -0.016 4.016 27 N -0.252 5.252 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.172 0.828 32 H 0.240 0.760 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.162 0.838 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.093 -15.628 6.547 22.039 hybrid contribution 0.614 1.039 -0.837 1.469 sum -13.479 -14.589 5.710 20.667 Atomic orbital electron populations 1.22890 0.76957 1.03111 1.02558 1.86262 1.23093 1.24163 1.87743 1.19687 0.88996 0.84877 0.92664 1.21123 0.91887 0.99151 1.03318 1.20184 0.93984 0.93319 0.98526 1.18056 0.86668 0.83921 0.77356 1.90785 1.64146 1.36471 1.49418 1.46009 1.08910 1.07603 1.73647 1.21639 0.78134 0.97626 1.02058 1.20714 0.97105 0.91837 0.96828 1.21951 0.99323 1.02466 0.96249 1.22266 0.97864 1.00923 0.95908 1.20798 0.83972 0.89123 1.01596 1.44035 1.03093 1.56362 1.27899 1.19231 0.95773 1.06759 1.16168 0.91690 1.25018 0.98153 0.96148 1.00421 1.70037 1.20422 1.25191 1.39129 0.86252 0.78770 0.78568 0.83373 1.20281 1.21604 1.21774 1.20912 0.96435 0.89618 0.91107 1.22001 0.93135 1.00037 1.00799 1.22221 0.95030 0.99142 1.03730 1.22399 0.92562 0.93653 0.92958 1.67204 1.41250 0.98944 1.17841 0.92158 0.88484 0.92190 0.82795 0.76018 0.91521 0.91302 0.93301 0.90584 0.93788 0.92438 0.93780 0.96070 0.89588 0.93748 0.96132 0.92875 0.92867 0.92042 0.83842 0.81483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.19 10.47 -18.76 -0.20 -3.39 16 3 C 0.32 3.55 7.49 -17.16 -0.13 3.42 16 4 C -0.13 -1.55 9.61 -38.84 -0.37 -1.92 16 5 C -0.05 -0.56 5.91 -104.68 -0.62 -1.18 16 6 C 0.55 7.41 7.80 -12.18 -0.10 7.32 16 7 O -0.53 -8.84 16.44 5.36 0.09 -8.75 16 8 N -0.71 -8.59 4.91 -61.15 -0.30 -8.89 16 9 C 0.13 1.73 4.56 -4.04 -0.02 1.71 16 10 C -0.06 -0.94 0.53 -154.46 -0.08 -1.02 16 11 C -0.14 -1.96 7.54 37.16 0.28 -1.68 16 12 C -0.13 -2.21 4.75 -26.61 -0.13 -2.34 16 13 C 0.17 3.74 4.84 -3.71 -0.02 3.73 16 14 N -0.59 -13.96 2.99 -172.31 -0.52 -14.47 16 15 C -0.25 -6.63 9.59 -15.06 -0.14 -6.78 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 18 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 19 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.15 2.85 6.04 -3.71 -0.02 2.83 16 24 C -0.12 -1.92 4.91 -26.61 -0.13 -2.05 16 25 C -0.18 -1.61 9.61 -39.03 -0.38 -1.99 16 26 C 0.14 1.19 11.17 -17.61 -0.20 1.00 16 27 N -0.53 -5.50 9.18 -13.37 -0.12 -5.63 16 28 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.15 1.80 7.74 -52.49 -0.41 1.39 16 32 H 0.40 4.18 4.29 -40.82 -0.18 4.00 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.24 4.98 -51.93 -0.26 0.98 16 37 H 0.04 0.52 6.86 -51.93 -0.36 0.16 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.64 6.82 -51.93 -0.35 0.29 16 40 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 41 H 0.09 2.18 6.04 -51.93 -0.31 1.86 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 44 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.14 0.98 6.53 -52.49 -0.34 0.63 16 48 H 0.17 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -31.45 377.76 -7.93 -39.39 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.09 Total: 2.18 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.08 Total: 2.32 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.32 Total: -53.71 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.11 Total: -12.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.45 -7.93 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671843467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.695 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds