Wall clock time and date at job start Tue Mar 31 2020 17:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35686 * 116.99876 * 2 1 4 4 C 1.38897 * 119.62564 * 180.02562 * 3 2 1 5 5 C 1.39570 * 118.94482 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.88669 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00358 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99808 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00088 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47158 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46096 * 60.03186 * 10 9 8 12 12 C 1.53040 * 109.46104 * 300.07175 * 10 9 8 13 13 C 1.53195 * 109.31019 * 178.61435 * 12 10 9 14 14 N 1.46925 * 108.77734 * 54.63425 * 13 12 10 15 15 C 1.36935 * 120.63166 * 126.41004 * 14 13 12 16 16 H 1.08001 * 120.00175 * 207.65928 * 15 14 13 17 17 C 1.38819 * 120.00028 * 27.66016 * 15 14 13 18 18 N 1.31623 * 119.99603 * 17.37696 * 17 15 14 19 19 Si 1.86794 * 120.00158 * 197.37501 * 17 15 14 20 20 H 1.48504 * 109.47224 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46810 * 119.99740 * 19 17 15 22 22 H 1.48495 * 109.47374 * 240.00148 * 19 17 15 23 23 C 1.46926 * 118.73801 * 306.38978 * 14 13 12 24 24 C 1.53044 * 109.45935 * 180.02562 * 10 9 8 25 25 C 1.39960 * 118.22108 * 359.97438 * 5 4 3 26 26 C 1.37978 * 119.13292 * 0.02562 * 25 5 4 27 27 N 1.31909 * 120.98049 * 359.97438 * 26 25 5 28 28 H 1.09000 * 109.47457 * 60.00207 * 1 2 3 29 29 H 1.09002 * 109.46568 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47362 * 299.99815 * 1 2 3 31 31 H 1.08002 * 120.52117 * 359.95010 * 4 3 2 32 32 H 0.97006 * 120.00102 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.47189 * 300.00463 * 9 8 6 34 34 H 1.09000 * 109.46708 * 60.00392 * 9 8 6 35 35 H 1.08997 * 109.47116 * 59.99521 * 11 10 9 36 36 H 1.08993 * 109.46958 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.46678 * 300.00179 * 11 10 9 38 38 H 1.09002 * 109.49382 * 298.55989 * 12 10 9 39 39 H 1.09000 * 109.49833 * 58.66397 * 12 10 9 40 40 H 1.09004 * 109.58717 * 294.84543 * 13 12 10 41 41 H 1.09000 * 109.58572 * 174.41862 * 13 12 10 42 42 H 0.97001 * 119.99684 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.58709 * 293.81739 * 23 14 13 44 44 H 1.09002 * 109.70347 * 173.46679 * 23 14 13 45 45 H 1.09003 * 109.49852 * 301.33662 * 24 10 9 46 46 H 1.08997 * 109.49488 * 61.43594 * 24 10 9 47 47 H 1.07999 * 120.43733 * 179.72455 * 25 5 4 48 48 H 1.08005 * 119.51421 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 -0.0005 5 6 4.0512 2.5237 -0.0011 6 6 5.5282 2.6417 -0.0022 7 8 6.2177 1.6412 -0.0023 8 7 6.1069 3.8589 -0.0033 9 6 7.5672 3.9756 -0.0038 10 6 7.9606 5.4542 -0.0056 11 6 7.3957 6.1335 1.2435 12 6 7.3926 6.1314 -1.2550 13 6 7.7591 7.6188 -1.2359 14 7 9.2157 7.7452 -1.0904 15 6 9.9435 8.4906 -1.9790 16 1 10.9796 8.2491 -2.1650 17 6 9.3497 9.5566 -2.6408 18 7 8.2256 10.0692 -2.1867 19 14 10.1458 10.2635 -4.1756 20 1 11.3926 9.5149 -4.4762 21 1 9.2078 10.1420 -5.3205 22 1 10.4695 11.6952 -3.9508 23 6 9.8764 7.0569 0.0270 24 6 9.4862 5.5759 -0.0069 25 6 3.2393 3.6637 -0.0016 26 6 1.8679 3.5116 -0.0010 27 7 1.3177 2.3127 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0230 0.3684 -0.0001 32 1 5.5565 4.6577 -0.0029 33 1 7.9707 3.4930 0.8862 34 1 7.9700 3.4918 -0.8937 35 1 7.7995 5.6510 2.1336 36 1 7.6763 7.1867 1.2426 37 1 6.3092 6.0465 1.2444 38 1 7.8139 5.6644 -2.1452 39 1 6.3080 6.0241 -1.2657 40 1 7.2643 8.1063 -0.3958 41 1 7.4434 8.0849 -2.1692 42 1 7.8104 10.8139 -2.6494 43 1 9.5543 7.4986 0.9700 44 1 10.9578 7.1522 -0.0705 45 1 9.8921 5.0730 0.8710 46 1 9.8872 5.1141 -0.9091 47 1 3.6803 4.6495 0.0024 48 1 1.2355 4.3871 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671843467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:44 Heat of formation + Delta-G solvation = -37.974451 kcal Electronic energy + Delta-G solvation = -28721.044825 eV Core-core repulsion = 24776.088968 eV Total energy + Delta-G solvation = -3944.955857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96724 -40.95565 -39.86806 -38.72791 -36.65648 -34.84248 -33.75036 -32.64417 -31.74519 -31.54959 -28.78006 -28.32528 -28.02202 -26.16595 -24.89255 -24.40479 -23.84986 -22.45145 -21.70358 -19.97592 -19.53092 -18.39927 -18.22468 -17.56710 -17.09328 -17.04381 -16.76948 -16.60523 -16.45524 -15.76086 -15.48124 -15.29049 -15.15173 -15.04408 -15.00365 -14.83423 -14.44440 -14.33625 -14.06343 -13.45151 -13.20318 -13.14744 -12.95756 -12.68744 -12.65302 -12.56358 -12.31221 -12.22338 -12.21094 -11.87198 -11.77915 -11.51440 -11.44233 -11.10202 -11.08386 -11.02915 -10.75103 -10.47343 -10.15390 -9.63434 -8.60562 -7.84711 -5.27405 -0.44185 0.05080 1.45407 1.48609 1.57785 1.74369 1.78252 2.22991 2.52793 2.72814 3.25567 3.29063 3.46296 3.74143 3.79141 3.85549 3.88489 3.93385 3.97178 4.06669 4.42872 4.43376 4.44413 4.54531 4.61238 4.64040 4.68186 4.74727 4.76705 4.79932 4.86530 4.88247 4.94998 4.98674 5.10810 5.15168 5.22566 5.26893 5.33935 5.37656 5.43695 5.53302 5.58997 5.70145 5.89238 6.13516 6.37984 6.43457 6.68883 7.01876 7.20050 7.92953 8.42443 9.20874 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.002364 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.921381 B =11841.403823 C =12589.146075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.307 3.693 4 C -0.150 4.150 5 C -0.060 4.060 6 C 0.557 3.443 7 O -0.569 6.569 8 N -0.699 5.699 9 C 0.139 3.861 10 C -0.054 4.054 11 C -0.138 4.138 12 C -0.118 4.118 13 C 0.178 3.822 14 N -0.610 5.610 15 C -0.258 4.258 16 H 0.061 0.939 17 C -0.049 4.049 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.293 1.293 23 C 0.142 3.858 24 C -0.113 4.113 25 C -0.171 4.171 26 C 0.143 3.857 27 N -0.534 5.534 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.413 0.587 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.010 0.990 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.024 0.976 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.170 0.830 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.932 -15.211 7.296 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.128 3.872 4 C -0.172 4.172 5 C -0.071 4.071 6 C 0.344 3.656 7 O -0.449 6.449 8 N -0.352 5.352 9 C 0.015 3.985 10 C -0.054 4.054 11 C -0.195 4.195 12 C -0.157 4.157 13 C 0.053 3.947 14 N -0.333 5.333 15 C -0.389 4.389 16 H 0.079 0.921 17 C -0.245 4.245 18 N -0.577 5.577 19 Si 0.788 3.212 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.220 1.220 23 C 0.017 3.983 24 C -0.152 4.152 25 C -0.191 4.191 26 C -0.012 4.012 27 N -0.259 5.259 28 H 0.078 0.922 29 H 0.140 0.860 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.252 0.748 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.187 0.813 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.275 -16.132 7.240 23.367 hybrid contribution 0.957 1.213 -1.005 1.843 sum -14.318 -14.920 6.235 21.598 Atomic orbital electron populations 1.23112 0.75329 1.04823 1.02581 1.86242 1.24780 1.24141 1.87684 1.19752 0.88934 0.85430 0.93043 1.21104 0.92321 0.99134 1.04612 1.20071 0.92925 0.94155 0.99918 1.18309 0.87395 0.83505 0.76397 1.90767 1.65169 1.37721 1.51263 1.45871 1.08442 1.07775 1.73085 1.21416 0.78921 0.96097 1.02027 1.20572 0.96104 0.92605 0.96147 1.21893 1.00893 1.00585 0.96174 1.22073 0.99676 0.97287 0.96664 1.20616 0.83142 0.91939 0.99053 1.44300 1.03786 1.56468 1.28794 1.19499 0.95922 1.06780 1.16670 0.92144 1.25674 0.98984 0.96897 1.02937 1.70165 1.21656 1.25701 1.40157 0.85325 0.78074 0.77576 0.80188 1.19536 1.21761 1.22026 1.21046 0.95865 0.91563 0.89839 1.21889 0.94290 0.97249 1.01772 1.22498 0.95064 0.99332 1.02211 1.23049 0.92946 0.94050 0.91189 1.67293 1.41382 0.99351 1.17865 0.92165 0.86042 0.92032 0.83931 0.74794 0.90700 0.92355 0.91553 0.93309 0.91532 0.93912 0.90992 0.97160 0.93435 0.94199 0.95859 0.93524 0.89920 0.92940 0.81279 0.77929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 113.37 1.18 1.64 16 2 O -0.32 -6.53 10.47 -90.05 -0.94 -7.48 16 3 C 0.31 6.63 7.49 84.80 0.63 7.26 16 4 C -0.15 -3.44 9.61 22.75 0.22 -3.22 16 5 C -0.06 -1.27 5.91 -19.90 -0.12 -1.39 16 6 C 0.56 14.03 7.80 86.88 0.68 14.71 16 7 O -0.57 -18.65 16.44 -3.75 -0.06 -18.71 16 8 N -0.70 -15.06 4.91 -465.67 -2.28 -17.34 16 9 C 0.14 3.39 4.56 86.38 0.39 3.79 16 10 C -0.05 -1.45 0.53 -52.15 -0.03 -1.48 16 11 C -0.14 -3.40 7.54 71.98 0.54 -2.86 16 12 C -0.12 -3.85 4.75 30.67 0.15 -3.71 16 13 C 0.18 7.84 4.84 86.36 0.42 8.26 16 14 N -0.61 -29.06 2.99 -699.07 -2.09 -31.15 16 15 C -0.26 -13.91 9.59 84.04 0.81 -13.11 16 16 H 0.06 3.23 7.89 -2.91 -0.02 3.21 16 17 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 18 N -0.93 -53.30 11.19 21.65 0.24 -53.06 16 19 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 23 C 0.14 5.49 6.04 86.36 0.52 6.02 16 24 C -0.11 -3.40 4.91 30.67 0.15 -3.25 16 25 C -0.17 -2.52 9.61 22.63 0.22 -2.31 16 26 C 0.14 1.99 11.17 84.62 0.94 2.94 16 27 N -0.53 -10.08 9.18 -309.12 -2.84 -12.92 16 28 H 0.06 0.76 8.10 -2.39 -0.02 0.75 16 29 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.14 3.48 7.74 -2.91 -0.02 3.46 16 32 H 0.41 7.06 4.29 -92.70 -0.40 6.66 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.50 4.98 -2.39 -0.01 1.49 16 37 H 0.07 1.32 6.86 -2.39 -0.02 1.31 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.93 6.82 -2.39 -0.02 1.91 16 40 H 0.01 0.47 6.69 -2.38 -0.02 0.46 16 41 H 0.05 2.46 6.04 -2.39 -0.01 2.44 16 42 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 43 H 0.02 0.90 6.69 -2.39 -0.02 0.88 16 44 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.17 1.55 6.53 -2.91 -0.02 1.54 16 48 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -70.13 377.76 1.75 -68.38 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.58 Total: 14.84 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.12 Total: 11.01 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -6.97 Total: -114.47 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.00 Total: -26.19 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.13 1.75 -68.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671843467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.410 kcal (2) G-P(sol) polarization free energy of solvation -70.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds