Wall clock time and date at job start Tue Mar 31 2020 17:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35916 * 117.00534 * 2 1 4 4 C 1.38853 * 120.40325 * 359.97438 * 3 2 1 5 5 N 1.31887 * 120.99961 * 180.02562 * 4 3 2 6 6 C 1.31679 * 121.93883 * 359.67717 * 5 4 3 7 7 C 1.39531 * 120.69512 * 0.58691 * 6 5 4 8 8 C 1.47847 * 120.53296 * 179.73078 * 7 6 5 9 9 O 1.21545 * 120.00406 * 134.40244 * 8 7 6 10 10 N 1.34783 * 119.99964 * 314.39936 * 8 7 6 11 11 C 1.47021 * 125.64531 * 354.82323 * 10 8 7 12 12 C 1.54331 * 107.26888 * 178.99761 * 11 10 8 13 13 C 1.55153 * 102.94040 * 337.80585 * 12 11 10 14 14 H 1.08989 * 111.01004 * 277.38813 * 13 12 11 15 15 C 1.53008 * 110.99897 * 153.57545 * 13 12 11 16 16 C 1.53005 * 109.46612 * 178.18109 * 15 13 12 17 17 N 1.46504 * 109.46882 * 179.97438 * 16 15 13 18 18 C 1.36930 * 119.99959 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00215 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00029 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00060 * 180.28122 * 20 18 17 23 23 H 1.48498 * 109.46818 * 179.72681 * 22 20 18 24 24 H 1.48495 * 109.46802 * 299.72290 * 22 20 18 25 25 H 1.48500 * 109.47143 * 59.72268 * 22 20 18 26 26 C 1.47470 * 125.63176 * 174.85258 * 10 8 7 27 27 C 1.38847 * 120.40809 * 179.97438 * 3 2 1 28 28 C 1.50700 * 120.88025 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.47756 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47342 * 300.00419 * 1 2 3 31 31 H 1.09006 * 109.46934 * 60.00148 * 1 2 3 32 32 H 1.07994 * 119.50063 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.65337 * 180.31454 * 6 5 4 34 34 H 1.09001 * 109.88672 * 59.58357 * 11 10 8 35 35 H 1.08999 * 109.88422 * 298.41265 * 11 10 8 36 36 H 1.09001 * 110.71525 * 219.44512 * 12 11 10 37 37 H 1.08999 * 110.71592 * 96.17461 * 12 11 10 38 38 H 1.08999 * 109.47378 * 58.18380 * 15 13 12 39 39 H 1.08995 * 109.47225 * 298.17747 * 15 13 12 40 40 H 1.08998 * 109.47415 * 60.00426 * 16 15 13 41 41 H 1.08988 * 109.47249 * 300.00103 * 16 15 13 42 42 H 0.97008 * 119.99968 * 0.02562 * 17 16 15 43 43 H 0.96991 * 120.00051 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.34737 * 85.22832 * 26 10 8 45 45 H 1.09000 * 110.39821 * 322.89169 * 26 10 8 46 46 H 1.08998 * 109.46932 * 264.63994 * 28 27 3 47 47 H 1.09000 * 109.46838 * 24.63914 * 28 27 3 48 48 H 1.08997 * 109.47246 * 144.63951 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3808 -0.0005 5 7 1.8848 3.5621 -0.0010 6 6 3.1954 3.6890 0.0052 7 6 4.0200 2.5634 0.0004 8 6 5.4912 2.7101 0.0015 9 8 6.1688 2.0342 0.7507 10 7 6.0810 3.5933 -0.8284 11 6 5.3970 4.3923 -1.8556 12 6 6.4650 5.2741 -2.5366 13 6 7.5934 5.3364 -1.4736 14 1 7.3830 6.0998 -0.7247 15 6 8.9536 5.5779 -2.1313 16 6 10.0320 5.6784 -1.0506 17 7 11.3345 5.9090 -1.6803 18 6 12.4569 6.0339 -0.9059 19 1 12.3820 5.9619 0.1690 20 6 13.6910 6.2529 -1.5026 21 7 13.7822 6.3411 -2.8127 22 14 15.2233 6.4154 -0.4466 23 1 16.4044 6.6367 -1.3191 24 1 15.0677 7.5674 0.4774 25 1 15.4158 5.1714 0.3412 26 6 7.5193 3.9176 -0.8564 27 6 3.4321 1.2934 0.0005 28 6 4.2810 0.0482 0.0005 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2198 2.3226 -0.0005 33 1 3.6368 4.6747 0.0097 34 1 4.6379 5.0218 -1.3913 35 1 4.9359 3.7336 -2.5916 36 1 6.0708 6.2698 -2.7395 37 1 6.8240 4.8061 -3.4533 38 1 8.9222 6.5069 -2.7006 39 1 9.1859 4.7495 -2.8004 40 1 10.0636 4.7494 -0.4813 41 1 9.7997 6.5067 -0.3815 42 1 11.4017 5.9740 -2.6459 43 1 14.6445 6.4938 -3.2296 44 1 8.0566 3.2037 -1.4807 45 1 7.9276 3.9217 0.1543 46 1 4.5645 -0.1982 1.0238 47 1 3.7139 -0.7780 -0.4283 48 1 5.1783 0.2202 -0.5938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672814649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:01 Heat of formation + Delta-G solvation = -24.886931 kcal Electronic energy + Delta-G solvation = -28078.136137 eV Core-core repulsion = 24133.747797 eV Total energy + Delta-G solvation = -3944.388339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45435 -40.09179 -38.52022 -37.79952 -35.17258 -34.14860 -33.12330 -31.43682 -30.76981 -29.55903 -28.36069 -28.12094 -27.08717 -25.00119 -23.63738 -22.90054 -22.73699 -21.28327 -20.26013 -19.90471 -18.40002 -17.92536 -17.12071 -16.91531 -16.65668 -16.40778 -16.22609 -15.58809 -14.91977 -14.66934 -14.54911 -14.34514 -14.00088 -13.53049 -13.48456 -13.37663 -13.16871 -13.13472 -13.02616 -12.94741 -12.73916 -12.48413 -12.19508 -12.08669 -11.96439 -11.70016 -11.37324 -11.05958 -10.81193 -10.66561 -10.58391 -10.45459 -10.35581 -10.00183 -9.87082 -9.70457 -9.64799 -8.93684 -8.83730 -8.80224 -6.89303 -5.73791 -3.02272 0.29183 0.77145 2.33603 2.55367 2.86417 3.29652 3.46904 3.50878 3.52172 3.90843 4.03709 4.12041 4.30166 4.38811 4.43067 4.56362 4.59697 4.62022 4.72469 4.79498 4.85026 4.97616 5.01813 5.15116 5.25089 5.32746 5.38848 5.41724 5.52913 5.58948 5.65477 5.71680 5.76616 5.78994 5.81815 5.88880 5.99505 6.06279 6.10186 6.24428 6.37811 6.38155 6.64653 6.85634 6.89556 7.25526 7.39798 7.72815 7.87405 8.45476 9.56362 10.14638 10.49030 11.49137 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.001940 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.532142 B =14427.744593 C =14962.606183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.070 3.930 4 C 0.036 3.964 5 N -0.453 5.453 6 C 0.099 3.901 7 C -0.141 4.141 8 C 0.579 3.421 9 O -0.522 6.522 10 N -0.611 5.611 11 C 0.095 3.905 12 C -0.128 4.128 13 C -0.094 4.094 14 H 0.087 0.913 15 C -0.114 4.114 16 C 0.151 3.849 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.111 3.889 27 C -0.022 4.022 28 C -0.109 4.109 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.528 -9.788 1.684 33.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.023 3.977 4 C -0.121 4.121 5 N -0.162 5.162 6 C -0.060 4.060 7 C -0.146 4.146 8 C 0.366 3.634 9 O -0.398 6.398 10 N -0.345 5.345 11 C -0.028 4.028 12 C -0.166 4.166 13 C -0.114 4.114 14 H 0.105 0.895 15 C -0.153 4.153 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.011 4.011 27 C -0.031 4.031 28 C -0.165 4.165 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.183 0.817 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -31.526 -9.684 2.270 33.057 hybrid contribution 1.045 -0.393 0.204 1.135 sum -30.481 -10.077 2.475 32.199 Atomic orbital electron populations 1.23166 0.77766 1.04638 1.01651 1.86096 1.21692 1.25473 1.88523 1.19705 0.92173 0.86125 0.99724 1.23070 1.00727 0.87059 1.01281 1.67565 1.11744 1.25945 1.10983 1.22930 0.88465 0.98233 0.96378 1.20708 0.94658 0.93915 1.05368 1.17543 0.86293 0.79422 0.80171 1.90834 1.64654 1.44029 1.40260 1.48453 1.09956 1.40896 1.35180 1.22254 0.96127 0.94075 0.90325 1.22738 0.95069 1.00051 0.98727 1.22362 0.95538 0.96052 0.97437 0.89495 1.21687 0.92294 1.02342 0.98947 1.20685 0.85670 0.97551 0.93775 1.42354 1.01745 1.87274 1.06436 1.19201 0.86058 1.41197 0.90589 0.91240 1.24744 0.97683 1.02941 0.95721 1.69648 1.24165 1.56686 1.07859 0.86256 0.82843 0.77909 0.79132 1.21690 1.21287 1.21254 1.22480 0.79736 0.96136 1.02703 1.19736 0.90941 0.95558 0.96888 1.20715 0.98531 0.93262 1.03982 0.87658 0.92261 0.92275 0.82058 0.81720 0.91044 0.91378 0.89647 0.90088 0.91206 0.91550 0.96285 0.96430 0.78328 0.93508 0.90667 0.89787 0.89544 0.90621 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.07 16 2 O -0.31 -2.39 9.58 -19.48 -0.19 -2.58 16 3 C 0.07 0.64 6.68 -39.13 -0.26 0.38 16 4 C 0.04 0.30 10.21 -17.30 -0.18 0.12 16 5 N -0.45 -4.51 10.34 -12.79 -0.13 -4.65 16 6 C 0.10 0.97 9.58 -17.14 -0.16 0.81 16 7 C -0.14 -1.58 5.37 -104.84 -0.56 -2.14 16 8 C 0.58 7.60 6.68 -12.33 -0.08 7.52 16 9 O -0.52 -8.59 15.95 5.33 0.08 -8.51 16 10 N -0.61 -7.09 3.33 -171.59 -0.57 -7.66 16 11 C 0.09 0.82 6.01 -3.06 -0.02 0.80 16 12 C -0.13 -1.12 6.42 -24.89 -0.16 -1.28 16 13 C -0.09 -1.08 3.04 -88.47 -0.27 -1.35 16 14 H 0.09 0.98 8.14 -51.94 -0.42 0.56 16 15 C -0.11 -1.69 4.84 -26.72 -0.13 -1.82 16 16 C 0.15 2.98 6.14 -4.04 -0.02 2.95 16 17 N -0.73 -18.76 5.60 -59.91 -0.34 -19.10 16 18 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 22 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 C 0.11 1.42 5.69 -2.51 -0.01 1.40 16 27 C -0.02 -0.24 5.96 -103.75 -0.62 -0.86 16 28 C -0.11 -1.11 8.76 36.01 0.32 -0.80 16 29 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 31 H 0.06 0.15 7.67 -51.93 -0.40 -0.25 16 32 H 0.16 0.85 6.30 -52.49 -0.33 0.52 16 33 H 0.17 1.35 6.24 -52.49 -0.33 1.02 16 34 H 0.07 0.51 5.68 -51.93 -0.30 0.22 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 40 H 0.02 0.39 7.59 -51.93 -0.39 -0.01 16 41 H 0.02 0.36 8.14 -51.94 -0.42 -0.07 16 42 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 45 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.67 7.47 -51.93 -0.39 0.28 16 48 H 0.07 0.84 7.10 -51.93 -0.37 0.47 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -34.68 388.05 -8.40 -43.08 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.39 Total: 4.35 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.42 Total: -0.70 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.31 Total: -59.20 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.10 Total: -11.08 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.68 -8.40 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672814649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.193 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds