Wall clock time and date at job start Tue Mar 31 2020 17:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35916 * 117.00534 * 2 1 4 4 C 1.38853 * 120.40325 * 359.97438 * 3 2 1 5 5 N 1.31887 * 120.99961 * 180.02562 * 4 3 2 6 6 C 1.31679 * 121.93883 * 359.67717 * 5 4 3 7 7 C 1.39531 * 120.69512 * 0.58691 * 6 5 4 8 8 C 1.47847 * 120.53296 * 179.73078 * 7 6 5 9 9 O 1.21545 * 120.00406 * 134.40244 * 8 7 6 10 10 N 1.34783 * 119.99964 * 314.39936 * 8 7 6 11 11 C 1.47021 * 125.64531 * 354.82323 * 10 8 7 12 12 C 1.54331 * 107.26888 * 178.99761 * 11 10 8 13 13 C 1.55153 * 102.94040 * 337.80585 * 12 11 10 14 14 H 1.08989 * 111.01004 * 277.38813 * 13 12 11 15 15 C 1.53008 * 110.99897 * 153.57545 * 13 12 11 16 16 C 1.53005 * 109.46612 * 178.18109 * 15 13 12 17 17 N 1.46504 * 109.46882 * 179.97438 * 16 15 13 18 18 C 1.36930 * 119.99959 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00215 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00029 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00060 * 180.28122 * 20 18 17 23 23 H 1.48498 * 109.46818 * 179.72681 * 22 20 18 24 24 H 1.48495 * 109.46802 * 299.72290 * 22 20 18 25 25 H 1.48500 * 109.47143 * 59.72268 * 22 20 18 26 26 C 1.47470 * 125.63176 * 174.85258 * 10 8 7 27 27 C 1.38847 * 120.40809 * 179.97438 * 3 2 1 28 28 C 1.50700 * 120.88025 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.47756 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47342 * 300.00419 * 1 2 3 31 31 H 1.09006 * 109.46934 * 60.00148 * 1 2 3 32 32 H 1.07994 * 119.50063 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.65337 * 180.31454 * 6 5 4 34 34 H 1.09001 * 109.88672 * 59.58357 * 11 10 8 35 35 H 1.08999 * 109.88422 * 298.41265 * 11 10 8 36 36 H 1.09001 * 110.71525 * 219.44512 * 12 11 10 37 37 H 1.08999 * 110.71592 * 96.17461 * 12 11 10 38 38 H 1.08999 * 109.47378 * 58.18380 * 15 13 12 39 39 H 1.08995 * 109.47225 * 298.17747 * 15 13 12 40 40 H 1.08998 * 109.47415 * 60.00426 * 16 15 13 41 41 H 1.08988 * 109.47249 * 300.00103 * 16 15 13 42 42 H 0.97008 * 119.99968 * 0.02562 * 17 16 15 43 43 H 0.96991 * 120.00051 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.34737 * 85.22832 * 26 10 8 45 45 H 1.09000 * 110.39821 * 322.89169 * 26 10 8 46 46 H 1.08998 * 109.46932 * 264.63994 * 28 27 3 47 47 H 1.09000 * 109.46838 * 24.63914 * 28 27 3 48 48 H 1.08997 * 109.47246 * 144.63951 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3808 -0.0005 5 7 1.8848 3.5621 -0.0010 6 6 3.1954 3.6890 0.0052 7 6 4.0200 2.5634 0.0004 8 6 5.4912 2.7101 0.0015 9 8 6.1688 2.0342 0.7507 10 7 6.0810 3.5933 -0.8284 11 6 5.3970 4.3923 -1.8556 12 6 6.4650 5.2741 -2.5366 13 6 7.5934 5.3364 -1.4736 14 1 7.3830 6.0998 -0.7247 15 6 8.9536 5.5779 -2.1313 16 6 10.0320 5.6784 -1.0506 17 7 11.3345 5.9090 -1.6803 18 6 12.4569 6.0339 -0.9059 19 1 12.3820 5.9619 0.1690 20 6 13.6910 6.2529 -1.5026 21 7 13.7822 6.3411 -2.8127 22 14 15.2233 6.4154 -0.4466 23 1 16.4044 6.6367 -1.3191 24 1 15.0677 7.5674 0.4774 25 1 15.4158 5.1714 0.3412 26 6 7.5193 3.9176 -0.8564 27 6 3.4321 1.2934 0.0005 28 6 4.2810 0.0482 0.0005 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2198 2.3226 -0.0005 33 1 3.6368 4.6747 0.0097 34 1 4.6379 5.0218 -1.3913 35 1 4.9359 3.7336 -2.5916 36 1 6.0708 6.2698 -2.7395 37 1 6.8240 4.8061 -3.4533 38 1 8.9222 6.5069 -2.7006 39 1 9.1859 4.7495 -2.8004 40 1 10.0636 4.7494 -0.4813 41 1 9.7997 6.5067 -0.3815 42 1 11.4017 5.9740 -2.6459 43 1 14.6445 6.4938 -3.2296 44 1 8.0566 3.2037 -1.4807 45 1 7.9276 3.9217 0.1543 46 1 4.5645 -0.1982 1.0238 47 1 3.7139 -0.7780 -0.4283 48 1 5.1783 0.2202 -0.5938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672814649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:00 Heat of formation + Delta-G solvation = -48.384258 kcal Electronic energy + Delta-G solvation = -28079.155057 eV Core-core repulsion = 24133.747797 eV Total energy + Delta-G solvation = -3945.407260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20326 -40.94139 -39.23162 -38.75470 -36.86037 -34.91475 -34.61665 -32.89296 -31.73413 -30.74129 -29.16880 -28.57530 -28.31688 -26.24098 -25.04214 -23.94296 -23.47896 -22.68611 -21.27797 -20.79023 -19.20946 -19.08360 -18.61276 -17.62000 -17.57657 -17.16075 -16.91291 -16.63601 -16.50484 -15.87558 -15.39737 -15.31055 -15.18248 -15.02475 -14.77416 -14.33884 -14.14923 -14.02708 -13.96760 -13.87880 -13.82980 -13.23229 -13.01980 -12.97393 -12.95361 -12.79907 -12.73651 -12.39040 -12.32519 -12.22157 -11.98602 -11.70223 -11.57585 -11.45329 -11.41422 -10.91552 -10.66700 -10.52218 -9.78195 -9.54366 -8.99832 -7.95797 -5.24458 -0.46096 0.04845 1.44339 1.46561 1.49777 1.55934 1.72406 2.22365 2.55431 2.55985 3.18370 3.37211 3.37512 3.39614 3.53714 3.59797 3.62246 3.79909 3.94971 4.09804 4.17930 4.24989 4.32886 4.35782 4.40785 4.43046 4.50527 4.55345 4.57739 4.59925 4.62901 4.77188 4.78094 4.84156 4.91246 4.95483 4.97555 5.03003 5.12164 5.16594 5.28089 5.28964 5.39628 5.47449 5.50032 6.11934 6.27222 6.33007 6.68773 6.89596 7.33217 8.10127 8.33264 9.27408 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.001940 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.532142 B =14427.744593 C =14962.606183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.074 3.926 4 C 0.044 3.956 5 N -0.463 5.463 6 C 0.100 3.900 7 C -0.153 4.153 8 C 0.576 3.424 9 O -0.568 6.568 10 N -0.608 5.608 11 C 0.093 3.907 12 C -0.118 4.118 13 C -0.084 4.084 14 H 0.095 0.905 15 C -0.100 4.100 16 C 0.147 3.853 17 N -0.747 5.747 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.974 3.026 23 H -0.292 1.292 24 H -0.277 1.277 25 H -0.280 1.280 26 C 0.110 3.890 27 C -0.043 4.043 28 C -0.102 4.102 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.195 0.805 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.013 0.987 41 H 0.020 0.980 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.307 -9.214 1.593 35.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.026 3.974 4 C -0.114 4.114 5 N -0.172 5.172 6 C -0.058 4.058 7 C -0.158 4.158 8 C 0.365 3.635 9 O -0.448 6.448 10 N -0.340 5.340 11 C -0.028 4.028 12 C -0.155 4.155 13 C -0.103 4.103 14 H 0.113 0.887 15 C -0.138 4.138 16 C 0.021 3.979 17 N -0.390 5.390 18 C -0.382 4.382 19 H 0.090 0.910 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.218 1.218 24 H -0.203 1.203 25 H -0.206 1.206 26 C -0.013 4.013 27 C -0.052 4.052 28 C -0.158 4.158 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.212 0.788 33 H 0.197 0.803 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.207 0.793 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -34.357 -9.097 2.182 35.608 hybrid contribution 1.771 -0.651 0.257 1.905 sum -32.586 -9.749 2.439 34.100 Atomic orbital electron populations 1.23523 0.75445 1.06372 1.02966 1.86092 1.24073 1.24853 1.88176 1.19700 0.91584 0.87059 0.99030 1.23580 1.02159 0.86227 0.99428 1.67651 1.11533 1.26636 1.11400 1.23092 0.88469 0.98303 0.95925 1.20560 0.93300 0.94788 1.07125 1.17910 0.87147 0.78871 0.79585 1.90799 1.65825 1.45896 1.42236 1.48503 1.09559 1.40647 1.35339 1.22480 0.96322 0.94161 0.89884 1.22740 0.93616 1.01563 0.97609 1.22218 0.94682 0.95083 0.98364 0.88707 1.21522 0.92371 1.02494 0.97403 1.20878 0.84870 0.96946 0.95199 1.42585 1.03163 1.87231 1.06048 1.19602 0.87321 1.40171 0.91091 0.91007 1.25574 1.00710 1.03480 0.96992 1.69798 1.24528 1.58109 1.09397 0.85213 0.78906 0.78121 0.77540 1.21834 1.20296 1.20646 1.22365 0.80646 0.96934 1.01322 1.19877 0.92078 0.95355 0.97880 1.20609 0.98112 0.93997 1.03083 0.85922 0.91023 0.90761 0.78835 0.80277 0.88826 0.90262 0.87050 0.89832 0.90596 0.91969 0.96903 0.96235 0.79317 0.93927 0.91854 0.91986 0.90632 0.89349 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.16 16 2 O -0.32 -4.39 9.58 -92.61 -0.89 -5.28 16 3 C 0.07 1.24 6.68 22.56 0.15 1.39 16 4 C 0.04 0.61 10.21 84.83 0.87 1.48 16 5 N -0.46 -8.07 10.34 -194.39 -2.01 -10.08 16 6 C 0.10 1.80 9.58 85.03 0.81 2.62 16 7 C -0.15 -3.35 5.37 -20.01 -0.11 -3.46 16 8 C 0.58 15.49 6.68 86.79 0.58 16.07 16 9 O -0.57 -19.83 15.95 -3.86 -0.06 -19.89 16 10 N -0.61 -13.92 3.33 -815.07 -2.71 -16.63 16 11 C 0.09 1.39 6.01 86.73 0.52 1.91 16 12 C -0.12 -1.74 6.42 31.78 0.20 -1.54 16 13 C -0.08 -1.82 3.04 -9.40 -0.03 -1.85 16 14 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 15 C -0.10 -2.89 4.84 30.60 0.15 -2.74 16 16 C 0.15 5.87 6.14 86.38 0.53 6.40 16 17 N -0.75 -38.76 5.60 -343.46 -1.92 -40.69 16 18 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 22 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 C 0.11 2.85 5.69 86.85 0.49 3.34 16 27 C -0.04 -0.91 5.96 -19.30 -0.12 -1.03 16 28 C -0.10 -2.17 8.76 71.24 0.62 -1.55 16 29 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.07 0.15 7.67 -2.39 -0.02 0.13 16 31 H 0.07 0.11 7.67 -2.38 -0.02 0.09 16 32 H 0.20 1.30 6.30 -2.91 -0.02 1.28 16 33 H 0.18 2.52 6.24 -2.91 -0.02 2.50 16 34 H 0.09 1.03 5.68 -2.39 -0.01 1.02 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 40 H 0.01 0.54 7.59 -2.39 -0.02 0.52 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.37 20.35 7.67 -92.70 -0.71 19.64 16 43 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.06 1.78 7.96 -2.39 -0.02 1.76 16 45 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 1.57 7.47 -2.39 -0.02 1.55 16 48 H 0.06 1.41 7.10 -2.39 -0.02 1.39 16 Total: -1.00 -76.50 388.05 2.08 -74.42 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.26 Total: 23.95 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 7.10 Total: 4.71 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -6.36 Total: -126.96 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.95 Total: -25.17 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -76.50 2.08 -74.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672814649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.032 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds