Wall clock time and date at job start Tue Mar 31 2020 18:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40204 * 120.36696 * 2 1 4 4 C 1.35345 * 119.94519 * 179.76864 * 3 2 1 5 5 N 1.35769 * 120.70409 * 0.53747 * 4 3 2 6 6 C 1.46493 * 119.62198 * 179.71905 * 5 4 3 7 7 C 1.50705 * 109.47014 * 269.72186 * 6 5 4 8 8 O 1.21277 * 119.99718 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99919 * 180.02562 * 7 6 5 10 10 C 1.47027 * 125.64962 * 359.97438 * 9 7 6 11 11 C 1.54322 * 107.26795 * 181.10849 * 10 9 7 12 12 C 1.55154 * 102.94791 * 22.19252 * 11 10 9 13 13 H 1.08994 * 111.00425 * 82.60758 * 12 11 10 14 14 C 1.53000 * 111.00479 * 206.42758 * 12 11 10 15 15 C 1.52997 * 109.47060 * 293.54210 * 14 12 11 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.36939 * 120.00037 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99653 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99758 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47234 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46810 * 120.00354 * 21 19 17 24 24 H 1.48497 * 109.47376 * 240.00181 * 21 19 17 25 25 C 1.47420 * 125.64817 * 180.02562 * 9 7 6 26 26 C 1.34655 * 120.74650 * 359.43385 * 5 4 3 27 27 O 1.22065 * 119.98289 * 180.27657 * 26 5 4 28 28 C 1.36391 * 120.36758 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47635 * 269.97838 * 1 2 3 30 30 H 1.09002 * 109.47487 * 29.97620 * 1 2 3 31 31 H 1.09004 * 109.47454 * 149.97193 * 1 2 3 32 32 H 1.07997 * 120.02590 * 0.02729 * 3 2 1 33 33 H 1.08000 * 119.65091 * 180.24952 * 4 3 2 34 34 H 1.09006 * 109.46932 * 149.72529 * 6 5 4 35 35 H 1.08998 * 109.47857 * 29.72467 * 6 5 4 36 36 H 1.09001 * 109.88078 * 61.68992 * 10 9 7 37 37 H 1.08996 * 109.88020 * 300.52214 * 10 9 7 38 38 H 1.09005 * 110.72151 * 263.82500 * 11 10 9 39 39 H 1.09004 * 110.72168 * 140.56067 * 11 10 9 40 40 H 1.09002 * 109.47398 * 53.54379 * 14 12 11 41 41 H 1.09001 * 109.47194 * 173.54560 * 14 12 11 42 42 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 43 43 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 44 44 H 0.97004 * 119.99396 * 0.02562 * 16 15 14 45 45 H 0.97001 * 119.99359 * 179.97438 * 20 19 17 46 46 H 1.09007 * 110.36507 * 36.98826 * 25 9 7 47 47 H 1.09002 * 110.37489 * 274.66449 * 25 9 7 48 48 H 1.07997 * 120.35172 * 359.95992 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1997 0.0047 5 7 4.2538 0.0273 -0.0014 6 6 5.7186 0.0443 -0.0024 7 6 6.2200 0.0501 -1.4235 8 8 5.4313 0.0414 -2.3448 9 7 7.5448 0.0649 -1.6706 10 6 8.6062 0.0770 -0.6533 11 6 9.9560 0.1205 -1.4000 12 6 9.5683 0.7013 -2.7855 13 1 9.5072 1.7889 -2.7499 14 6 10.5510 0.2451 -3.8658 15 6 11.9264 0.8584 -3.5960 16 7 12.8673 0.4222 -4.6307 17 6 14.1684 0.8478 -4.5966 18 1 14.5010 1.5048 -3.8066 19 6 15.0599 0.4340 -5.5768 20 7 14.6546 -0.3671 -6.5393 21 14 16.8346 1.0151 -5.5306 22 1 17.0346 1.9021 -4.3566 23 1 17.7373 -0.1591 -5.4229 24 1 17.1429 1.7639 -6.7754 25 6 8.1697 0.0726 -3.0058 26 6 3.6016 -1.1508 -0.0010 27 8 4.2312 -2.1965 -0.0015 28 6 2.1965 -1.1768 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5143 32 1 1.6822 2.1487 0.0004 33 1 4.1103 2.1343 0.0088 34 1 6.0925 -0.8416 0.5112 35 1 6.0721 0.9383 0.5113 36 1 8.5475 -0.8260 -0.0456 37 1 8.5037 0.9591 -0.0212 38 1 10.3714 -0.8819 -1.5045 39 1 10.6586 0.7787 -0.8888 40 1 10.6286 -0.8420 -3.8508 41 1 10.1936 0.5703 -4.8429 42 1 11.8488 1.9456 -3.6110 43 1 12.2840 0.5333 -2.6190 44 1 12.5683 -0.1676 -5.3405 45 1 15.2775 -0.6560 -7.2244 46 1 7.5845 0.6814 -3.6951 47 1 8.2666 -0.9446 -3.3854 48 1 1.6683 -2.1188 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672876153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:31 Heat of formation + Delta-G solvation = -52.267436 kcal Electronic energy + Delta-G solvation = -27668.654622 eV Core-core repulsion = 23723.078975 eV Total energy + Delta-G solvation = -3945.575647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -42.56658 -41.00818 -38.97846 -38.13168 -36.85162 -36.25056 -34.61714 -32.76423 -31.44228 -30.62994 -30.53850 -29.12805 -27.59477 -25.63881 -24.68038 -24.10013 -23.19299 -22.54181 -21.26006 -20.59616 -19.14669 -18.62599 -18.56712 -18.43559 -17.17458 -17.05702 -16.77068 -16.69966 -16.24997 -15.67491 -15.38610 -15.28547 -15.19996 -15.06965 -15.02358 -14.42657 -14.19494 -14.05949 -13.90502 -13.62461 -13.40598 -13.29166 -13.10373 -13.02289 -12.87846 -12.86296 -12.79086 -12.48023 -12.36219 -12.13159 -11.96485 -11.65447 -11.57234 -11.50549 -11.34757 -11.12864 -10.92256 -10.61608 -9.79305 -9.01409 -8.99146 -7.95158 -5.24178 -0.14471 0.89510 1.34277 1.40047 1.48046 1.49021 1.59175 1.95563 2.56571 2.63858 3.25688 3.39271 3.54676 3.60464 3.65573 3.71156 3.80320 3.85310 4.03881 4.12171 4.16620 4.27883 4.32241 4.33473 4.38168 4.44379 4.59008 4.59718 4.76715 4.77321 4.82632 4.82938 4.86750 4.88411 4.95997 5.03779 5.10097 5.19569 5.23563 5.28488 5.38356 5.46604 5.47690 5.50953 5.64310 6.02590 6.27603 6.33882 6.87368 6.95800 7.33227 8.11016 8.32111 9.28948 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.040296 B = 0.001663 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.684779 B =16833.233607 C =16870.366214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.034 3.966 3 C -0.230 4.230 4 C 0.139 3.861 5 N -0.485 5.485 6 C 0.079 3.921 7 C 0.510 3.490 8 O -0.583 6.583 9 N -0.612 5.612 10 C 0.094 3.906 11 C -0.126 4.126 12 C -0.080 4.080 13 H 0.098 0.902 14 C -0.105 4.105 15 C 0.154 3.846 16 N -0.752 5.752 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.110 3.890 26 C 0.502 3.498 27 O -0.613 6.613 28 C -0.293 4.293 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.184 0.816 33 H 0.204 0.796 34 H 0.126 0.874 35 H 0.177 0.823 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.032 0.968 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.953 8.374 21.705 36.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.030 3.970 3 C -0.252 4.252 4 C 0.013 3.987 5 N -0.194 5.194 6 C -0.046 4.046 7 C 0.298 3.702 8 O -0.463 6.463 9 N -0.345 5.345 10 C -0.027 4.027 11 C -0.163 4.163 12 C -0.100 4.100 13 H 0.116 0.884 14 C -0.143 4.143 15 C 0.028 3.972 16 N -0.395 5.395 17 C -0.376 4.376 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.804 3.196 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.222 1.222 25 C -0.013 4.013 26 C 0.308 3.692 27 O -0.501 6.501 28 C -0.315 4.315 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.201 0.799 33 H 0.221 0.779 34 H 0.144 0.856 35 H 0.195 0.805 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.050 0.950 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.887 7.822 21.360 35.988 hybrid contribution 1.110 -0.716 -1.125 1.735 sum -26.777 7.107 20.235 34.307 Atomic orbital electron populations 1.21045 0.87995 1.04541 1.04406 1.20651 0.98534 0.92107 0.85724 1.21080 0.92466 0.99810 1.11813 1.22717 0.94435 0.89649 0.91854 1.45101 1.07904 1.07547 1.58847 1.21978 0.79041 1.09735 0.93813 1.20950 0.81067 0.75954 0.92191 1.90735 1.55608 1.52122 1.47796 1.48552 1.04941 1.71799 1.09248 1.22447 0.85354 1.04274 0.90644 1.22758 0.96421 1.02636 0.94509 1.22156 0.91623 1.01017 0.95208 0.88387 1.21509 0.93985 1.00338 0.98475 1.20806 0.88531 0.96349 0.91490 1.42678 1.07632 1.58462 1.30678 1.19726 0.87467 1.22581 1.07778 0.90234 1.25623 1.02667 1.01101 0.97796 1.69839 1.35711 1.40285 1.16516 0.85044 0.79839 0.77250 0.77460 1.18651 1.22142 1.22172 1.22245 0.93574 1.00586 0.84871 1.17522 0.90333 0.82675 0.78709 1.90904 1.70262 1.32323 1.56651 1.21896 0.91557 1.00844 1.17186 0.88282 0.88707 0.91023 0.79905 0.77903 0.85596 0.80546 0.89764 0.87223 0.91036 0.87732 0.92388 0.92554 0.96035 0.95042 0.79726 0.94091 0.91466 0.92514 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.03 71.23 0.71 -0.09 16 2 C 0.03 0.45 5.89 -19.82 -0.12 0.34 16 3 C -0.23 -2.10 9.71 22.08 0.21 -1.88 16 4 C 0.14 1.45 10.28 83.42 0.86 2.30 16 5 N -0.48 -9.03 2.07 -655.06 -1.36 -10.38 16 6 C 0.08 1.17 5.01 85.64 0.43 1.60 16 7 C 0.51 11.90 7.92 87.66 0.69 12.59 16 8 O -0.58 -19.45 16.68 -3.02 -0.05 -19.50 16 9 N -0.61 -12.42 3.33 -811.78 -2.70 -15.12 16 10 C 0.09 1.18 6.49 86.73 0.56 1.74 16 11 C -0.13 -2.09 5.59 31.78 0.18 -1.92 16 12 C -0.08 -1.73 3.07 -9.40 -0.03 -1.76 16 13 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 14 C -0.10 -3.13 4.84 30.59 0.15 -2.98 16 15 C 0.15 5.75 6.11 86.38 0.53 6.28 16 16 N -0.75 -38.12 5.60 -343.46 -1.92 -40.05 16 17 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 20 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 21 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 C 0.11 2.63 6.38 86.86 0.55 3.19 16 26 C 0.50 13.60 7.40 84.82 0.63 14.23 16 27 O -0.61 -22.16 16.64 -5.53 -0.09 -22.25 16 28 C -0.29 -6.35 9.65 22.40 0.22 -6.13 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.28 8.10 -2.39 -0.02 0.26 16 31 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 32 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 33 H 0.20 0.25 8.03 -2.91 -0.02 0.22 16 34 H 0.13 2.03 7.39 -2.38 -0.02 2.02 16 35 H 0.18 0.52 8.01 -2.39 -0.02 0.50 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 1.38 8.01 -2.38 -0.02 1.36 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.82 8.11 -2.39 -0.02 1.81 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.03 1.12 7.51 -2.39 -0.02 1.10 16 44 H 0.37 20.29 7.67 -92.71 -0.71 19.58 16 45 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 46 H 0.07 1.76 8.04 -2.38 -0.02 1.74 16 47 H 0.06 1.52 8.04 -2.39 -0.02 1.50 16 48 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -89.13 398.34 3.31 -85.82 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.24 Total: 22.79 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.88 Total: 10.66 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -5.70 Total: -125.49 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.14 Total: -41.76 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -89.13 3.31 -85.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672876153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.556 kcal (2) G-P(sol) polarization free energy of solvation -89.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds