Wall clock time and date at job start Tue Mar 31 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35921 * 117.00286 * 2 1 4 4 C 1.38857 * 120.40294 * 359.71741 * 3 2 1 5 5 N 1.31881 * 120.99995 * 179.72654 * 4 3 2 6 6 C 1.31689 * 121.93887 * 0.58680 * 5 4 3 7 7 C 1.39527 * 120.69009 * 359.68232 * 6 5 4 8 8 C 1.47849 * 120.52796 * 180.02562 * 7 6 5 9 9 O 1.21559 * 119.99994 * 124.88114 * 8 7 6 10 10 N 1.34776 * 120.00389 * 304.88283 * 8 7 6 11 11 C 1.46930 * 120.62747 * 3.99921 * 10 8 7 12 12 C 1.52752 * 109.00701 * 233.58295 * 11 10 8 13 13 C 1.53041 * 109.38520 * 305.58980 * 12 11 10 14 14 C 1.53005 * 109.46047 * 181.26273 * 13 12 11 15 15 N 1.46501 * 109.44971 * 301.22599 * 13 12 11 16 16 C 1.36939 * 120.00008 * 300.06195 * 15 13 12 17 17 H 1.07999 * 120.00247 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00126 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99816 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00252 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46967 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46851 * 120.00152 * 20 18 16 23 23 H 1.48497 * 109.47317 * 240.00423 * 20 18 16 24 24 C 1.53039 * 109.54046 * 61.24176 * 13 12 11 25 25 C 1.46924 * 120.63107 * 184.27695 * 10 8 7 26 26 C 1.38844 * 120.40944 * 179.97438 * 3 2 1 27 27 C 1.50701 * 120.87907 * 0.02562 * 26 3 2 28 28 H 1.09001 * 109.46974 * 60.00127 * 1 2 3 29 29 H 1.09003 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47178 * 300.00140 * 1 2 3 31 31 H 1.08002 * 119.49705 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.65184 * 179.69940 * 6 5 4 33 33 H 1.08996 * 109.58569 * 353.42181 * 11 10 8 34 34 H 1.09004 * 109.58263 * 113.84181 * 11 10 8 35 35 H 1.08998 * 109.56663 * 185.55097 * 12 11 10 36 36 H 1.09000 * 109.38770 * 65.51646 * 12 11 10 37 37 H 1.08999 * 109.46798 * 299.92858 * 14 13 12 38 38 H 1.08996 * 109.47431 * 59.93151 * 14 13 12 39 39 H 1.09002 * 109.47171 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00232 * 120.06267 * 15 13 12 41 41 H 0.96994 * 119.99746 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.50315 * 178.68506 * 24 13 12 43 43 H 1.08997 * 109.52594 * 58.59762 * 24 13 12 44 44 H 1.09002 * 109.58982 * 246.15740 * 25 10 8 45 45 H 1.08998 * 109.58688 * 6.58584 * 25 10 8 46 46 H 1.09003 * 109.47121 * 85.06127 * 27 26 3 47 47 H 1.08990 * 109.47497 * 205.06327 * 27 26 3 48 48 H 1.08999 * 109.47271 * 325.06721 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0059 5 7 1.8846 3.5621 -0.0006 6 6 3.1954 3.6891 -0.0010 7 6 4.0199 2.5636 -0.0004 8 6 5.4911 2.7103 -0.0003 9 8 6.1555 2.1719 0.8636 10 7 6.0956 3.4411 -0.9579 11 6 5.3016 4.1692 -1.9570 12 6 5.7763 3.7739 -3.3540 13 6 7.2856 4.0033 -3.4614 14 6 7.7578 3.6376 -4.8701 15 7 7.5849 5.4128 -3.1970 16 6 7.0433 6.3884 -3.9908 17 1 6.3959 6.1187 -4.8121 18 6 7.3264 7.7240 -3.7399 19 7 8.1159 8.0526 -2.7393 20 14 6.5883 9.0547 -4.8232 21 1 5.7429 8.4278 -5.8709 22 1 5.7558 9.9628 -3.9939 23 1 7.6787 9.8315 -5.4656 24 6 8.0107 3.1272 -2.4373 25 6 7.5611 3.5198 -1.0263 26 6 3.4321 1.2935 0.0005 27 6 4.2810 0.0484 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2197 2.3225 -0.0101 32 1 3.6366 4.6748 -0.0014 33 1 4.2483 3.9127 -1.8442 34 1 5.4353 5.2422 -1.8186 35 1 5.2622 4.3805 -4.0995 36 1 5.5552 2.7207 -3.5267 37 1 7.5357 2.5888 -5.0669 38 1 7.2416 4.2614 -5.5998 39 1 8.8327 3.8013 -4.9470 40 1 8.1667 5.6551 -2.4596 41 1 8.3140 8.9858 -2.5642 42 1 9.0868 3.2736 -2.5301 43 1 7.7690 2.0798 -2.6178 44 1 7.8829 4.5386 -0.8105 45 1 7.9981 2.8348 -0.2998 46 1 4.4130 -0.3014 -1.0234 47 1 5.2546 0.2724 0.4363 48 1 3.7894 -0.7266 0.5886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673961388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:26 Heat of formation + Delta-G solvation = -18.592039 kcal Electronic energy + Delta-G solvation = -30048.864105 eV Core-core repulsion = 26104.748732 eV Total energy + Delta-G solvation = -3944.115372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23261 -39.86267 -38.32053 -37.68726 -34.59589 -33.90771 -32.45600 -31.41137 -30.27480 -29.07018 -28.18249 -27.97214 -27.48940 -24.50731 -23.80284 -23.12654 -22.48913 -22.14721 -19.97163 -18.60260 -17.75734 -17.63336 -17.11092 -16.61559 -16.35240 -16.13248 -15.71257 -15.05550 -14.67615 -14.41984 -14.07082 -13.90334 -13.76639 -13.69734 -13.47611 -13.20661 -13.04700 -12.94229 -12.61375 -12.45447 -12.28063 -12.14024 -11.90416 -11.74460 -11.55162 -11.32020 -11.26003 -10.93415 -10.82001 -10.73842 -10.38854 -10.26332 -10.10706 -9.70058 -9.57393 -9.52080 -9.33189 -8.97119 -8.61930 -8.29023 -6.99290 -5.80079 -3.08654 0.63043 1.04342 2.59609 2.89272 3.24072 3.40470 3.46615 3.48873 3.56286 4.20246 4.31788 4.51456 4.55646 4.57811 4.68763 4.78002 4.94416 5.07086 5.18782 5.21090 5.31207 5.38152 5.41451 5.54271 5.55017 5.55926 5.60435 5.70906 5.78191 5.94084 6.01807 6.04319 6.07333 6.12701 6.23615 6.26141 6.37849 6.41153 6.48011 6.54184 6.69634 6.84761 6.88401 6.97546 7.03879 7.62001 7.69105 7.70446 8.25151 8.38143 9.50110 10.06290 10.41765 11.42400 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.003478 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.183449 B = 8049.158413 C = 8823.292521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.067 3.933 4 C 0.033 3.967 5 N -0.452 5.452 6 C 0.102 3.898 7 C -0.135 4.135 8 C 0.564 3.436 9 O -0.541 6.541 10 N -0.586 5.586 11 C 0.108 3.892 12 C -0.134 4.134 13 C 0.198 3.802 14 C -0.150 4.150 15 N -0.717 5.717 16 C -0.232 4.232 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.901 3.099 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.129 4.129 25 C 0.116 3.884 26 C -0.027 4.027 27 C -0.122 4.122 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.148 -16.271 4.058 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.020 3.980 4 C -0.125 4.125 5 N -0.161 5.161 6 C -0.057 4.057 7 C -0.140 4.140 8 C 0.351 3.649 9 O -0.420 6.420 10 N -0.317 5.317 11 C -0.014 4.014 12 C -0.174 4.174 13 C 0.106 3.894 14 C -0.209 4.209 15 N -0.359 5.359 16 C -0.363 4.363 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.732 3.268 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.168 4.168 25 C -0.006 4.006 26 C -0.036 4.036 27 C -0.178 4.178 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.177 0.823 32 H 0.184 0.816 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.305 -15.895 4.380 20.573 hybrid contribution -0.112 0.475 -0.554 0.738 sum -12.417 -15.420 3.826 20.164 Atomic orbital electron populations 1.23134 0.78022 1.04378 1.01625 1.86081 1.21492 1.25643 1.88686 1.19701 0.92216 0.85990 1.00082 1.23031 1.00605 0.87120 1.01723 1.67572 1.11804 1.25842 1.10895 1.22948 0.88389 0.98446 0.95904 1.20734 0.95246 0.93815 1.04224 1.17936 0.86274 0.78831 0.81901 1.90743 1.65373 1.48845 1.37074 1.48063 1.07754 1.47077 1.28779 1.21894 0.93626 0.98144 0.87783 1.22227 0.99555 0.99531 0.96129 1.19529 0.91435 0.86072 0.92341 1.22218 1.01286 0.98626 0.98800 1.42519 1.57989 0.98614 1.36777 1.19150 1.22681 0.86154 1.08359 0.91132 1.24692 1.00366 0.97090 0.98589 1.69656 1.40470 1.16737 1.31086 0.86218 0.78294 0.82494 0.79779 1.20643 1.21957 1.22035 1.22094 1.00819 0.99355 0.94500 1.21646 0.78365 1.02983 0.97593 1.19623 0.90819 0.95407 0.97742 1.20862 1.00335 0.93578 1.03016 0.92307 0.87865 0.92395 0.82258 0.81555 0.91130 0.88684 0.90527 0.93424 0.94628 0.92536 0.93092 0.78112 0.93598 0.90579 0.91915 0.90068 0.89696 0.90639 0.89057 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.07 9.76 -19.49 -0.19 -3.26 16 3 C 0.07 0.80 6.68 -39.13 -0.26 0.54 16 4 C 0.03 0.37 10.21 -17.30 -0.18 0.20 16 5 N -0.45 -6.15 10.34 -12.79 -0.13 -6.28 16 6 C 0.10 1.43 8.64 -17.13 -0.15 1.28 16 7 C -0.14 -1.97 4.85 -104.84 -0.51 -2.48 16 8 C 0.56 9.20 6.60 -12.33 -0.08 9.12 16 9 O -0.54 -10.02 14.69 5.31 0.08 -9.94 16 10 N -0.59 -9.43 2.98 -174.14 -0.52 -9.95 16 11 C 0.11 1.74 5.30 -3.93 -0.02 1.72 16 12 C -0.13 -2.22 4.69 -26.84 -0.13 -2.34 16 13 C 0.20 3.51 0.74 -131.77 -0.10 3.41 16 14 C -0.15 -2.57 8.44 37.16 0.31 -2.25 16 15 N -0.72 -15.87 4.14 -47.19 -0.20 -16.07 16 16 C -0.23 -5.81 8.68 -15.06 -0.13 -5.94 16 17 H 0.07 1.74 6.70 -52.49 -0.35 1.39 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -26.58 13.06 55.49 0.72 -25.86 16 20 Si 0.90 21.48 29.55 -169.99 -5.02 16.45 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C -0.13 -2.02 4.96 -26.61 -0.13 -2.15 16 25 C 0.12 1.88 6.15 -3.71 -0.02 1.86 16 26 C -0.03 -0.36 5.96 -103.76 -0.62 -0.98 16 27 C -0.12 -1.48 9.50 36.01 0.34 -1.13 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.27 7.69 -51.93 -0.40 -0.12 16 31 H 0.16 1.30 6.30 -52.49 -0.33 0.97 16 32 H 0.17 2.25 7.45 -52.49 -0.39 1.86 16 33 H 0.07 1.04 4.79 -51.93 -0.25 0.79 16 34 H 0.09 1.79 7.74 -51.93 -0.40 1.39 16 35 H 0.08 1.35 7.31 -51.93 -0.38 0.97 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.04 7.27 -51.93 -0.38 0.66 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.38 9.23 6.46 -40.82 -0.26 8.97 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.46 6.94 -51.93 -0.36 1.10 16 45 H 0.08 1.35 7.03 -51.93 -0.36 0.98 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.26 5.75 -51.93 -0.30 0.97 16 48 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -30.28 374.72 -7.45 -37.73 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.06 Total: 9.94 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.77 Total: 1.58 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.12 Total: -58.15 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.11 Total: -13.20 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.28 -7.45 -37.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673961388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.136 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds