Wall clock time and date at job start Tue Mar 31 2020 17:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38354 * 119.41338 * 2 1 4 4 C 1.38331 * 119.46356 * 179.73978 * 3 2 1 5 5 C 1.50704 * 120.82777 * 180.25433 * 4 3 2 6 6 C 1.39987 * 118.34914 * 0.47698 * 4 3 2 7 7 C 1.47522 * 120.59732 * 179.77697 * 6 4 3 8 8 O 1.21596 * 119.99947 * 270.72594 * 7 6 4 9 9 N 1.34776 * 119.99959 * 91.00033 * 7 6 4 10 10 C 1.46501 * 119.99864 * 4.94684 * 9 7 6 11 11 C 1.46501 * 119.99911 * 184.94377 * 9 7 6 12 12 H 1.09001 * 109.47472 * 354.67996 * 11 9 7 13 13 C 1.52999 * 109.46999 * 234.67764 * 11 9 7 14 14 N 1.46500 * 109.47070 * 55.92888 * 13 11 9 15 15 C 1.36946 * 119.99761 * 185.09757 * 14 13 11 16 16 H 1.07992 * 119.99875 * 5.17609 * 15 14 13 17 17 C 1.38807 * 119.99734 * 185.18094 * 15 14 13 18 18 N 1.31615 * 120.00050 * 185.57264 * 17 15 14 19 19 Si 1.86800 * 120.00144 * 5.57155 * 17 15 14 20 20 H 1.48494 * 109.47060 * 89.51229 * 19 17 15 21 21 H 1.48501 * 109.47323 * 209.51379 * 19 17 15 22 22 H 1.48502 * 109.47048 * 329.51098 * 19 17 15 23 23 C 1.52999 * 109.46849 * 114.67721 * 11 9 7 24 24 C 1.52996 * 117.49954 * 248.74322 * 23 11 9 25 25 C 1.53005 * 117.49640 * 180.08126 * 23 11 9 26 26 C 1.40287 * 118.80288 * 359.50660 * 6 4 3 27 27 O 1.35427 * 119.79426 * 180.25082 * 26 6 4 28 28 N 1.31892 * 119.40925 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47398 * 270.02027 * 1 2 3 30 30 H 1.09001 * 109.47017 * 30.02262 * 1 2 3 31 31 H 1.09002 * 109.47328 * 150.02131 * 1 2 3 32 32 H 1.08008 * 120.26552 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.47173 * 270.23461 * 5 4 3 34 34 H 1.09003 * 109.46927 * 30.22854 * 5 4 3 35 35 H 1.08997 * 109.47211 * 150.22831 * 5 4 3 36 36 H 1.09002 * 109.47057 * 89.99933 * 10 9 7 37 37 H 1.08995 * 109.46814 * 209.99631 * 10 9 7 38 38 H 1.09000 * 109.46994 * 330.00075 * 10 9 7 39 39 H 1.08995 * 109.47305 * 175.92787 * 13 11 9 40 40 H 1.09001 * 109.47428 * 295.92794 * 13 11 9 41 41 H 0.96993 * 120.00469 * 5.09361 * 14 13 11 42 42 H 0.96997 * 120.00389 * 179.97438 * 18 17 15 43 43 H 1.08999 * 115.54696 * 34.42003 * 23 11 9 44 44 H 1.08996 * 117.50133 * 0.02562 * 24 23 11 45 45 H 1.09001 * 117.49668 * 145.02036 * 24 23 11 46 46 H 1.08997 * 117.49701 * 214.97974 * 25 23 11 47 47 H 1.08994 * 117.49886 * 359.97438 * 25 23 11 48 48 H 0.96699 * 113.99903 * 90.00476 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 0.0055 5 6 4.3408 2.5012 0.0114 6 6 4.2355 -0.0250 0.0006 7 6 5.7097 -0.0815 0.0011 8 8 6.3182 -0.0870 -1.0516 9 7 6.3816 -0.1326 1.1683 10 6 5.6480 -0.2415 2.4317 11 6 7.8457 -0.0795 1.1735 12 1 8.2136 -0.0950 0.1476 13 6 8.3972 -1.2887 1.9315 14 7 7.8769 -2.5198 1.3317 15 6 8.1510 -3.7313 1.9083 16 1 8.6789 -3.7743 2.8494 17 6 7.7504 -4.9041 1.2830 18 7 7.9153 -6.0616 1.8873 19 14 6.9772 -4.8394 -0.4162 20 1 8.0410 -4.9335 -1.4480 21 1 6.0329 -5.9747 -0.5740 22 1 6.2429 -3.5588 -0.5776 23 6 8.3067 1.2072 1.8612 24 6 8.9709 2.2750 0.9897 25 6 9.8136 1.4510 1.9665 26 6 3.4757 -1.2042 0.0010 27 8 4.0991 -2.4065 0.0015 28 7 2.1546 -1.1490 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6411 2.1375 -0.0004 33 1 4.5272 2.8178 -1.0149 34 1 3.7618 3.2666 0.5282 35 1 5.2911 2.3558 0.5251 36 1 5.5036 -1.2933 2.6785 37 1 6.2170 0.2430 3.2251 38 1 4.6777 0.2447 2.3314 39 1 9.4856 -1.2882 1.8737 40 1 8.0888 -1.2347 2.9756 41 1 7.3383 -2.4769 0.5262 42 1 7.6350 -6.8810 1.4506 43 1 7.6828 1.5483 2.6873 44 1 9.0790 2.0611 -0.0736 45 1 8.7841 3.3187 1.2426 46 1 10.1808 1.9529 2.8616 47 1 10.4763 0.6945 1.5463 48 1 4.2800 -2.7553 0.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676238673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:52 Heat of formation + Delta-G solvation = -21.530888 kcal Electronic energy + Delta-G solvation = -30540.949947 eV Core-core repulsion = 26596.707136 eV Total energy + Delta-G solvation = -3944.242810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21670 -40.73420 -38.78518 -38.49310 -36.72367 -35.93116 -35.17731 -33.48467 -32.79594 -30.58636 -29.23220 -28.46045 -27.82828 -25.94501 -24.49899 -23.64984 -22.88724 -22.70945 -21.54607 -20.60141 -19.63241 -19.51811 -18.65213 -18.27707 -17.87324 -16.86344 -16.66260 -16.23873 -16.06107 -15.84358 -15.34163 -15.11975 -14.90345 -14.80347 -14.73833 -14.24355 -14.10835 -14.06814 -13.95363 -13.75001 -13.58703 -13.26024 -13.24605 -13.10454 -12.95895 -12.83310 -12.81677 -12.63942 -12.38659 -12.25143 -12.02775 -11.86805 -11.51697 -11.21316 -11.04024 -10.93286 -10.61782 -10.50651 -9.86258 -9.73096 -9.30568 -8.07820 -5.37959 -0.31134 0.01482 1.30358 1.34415 1.37248 1.47282 1.82539 2.30762 2.41378 2.54580 2.86481 3.25504 3.28728 3.45581 3.54503 3.56864 3.91630 3.94409 3.99000 4.04530 4.15513 4.20575 4.22909 4.28782 4.36435 4.48236 4.50458 4.56526 4.63072 4.64870 4.78945 4.80816 4.83330 4.88983 4.94692 4.99193 5.03110 5.06506 5.11779 5.18192 5.22317 5.30192 5.50341 5.52762 5.74165 6.16582 6.21377 6.32800 6.80239 6.96841 7.04298 7.81754 7.99338 9.13013 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.005828 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.331174 B = 4802.902127 C = 7125.462616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.157 3.843 3 C -0.171 4.171 4 C 0.007 3.993 5 C -0.118 4.118 6 C -0.214 4.214 7 C 0.578 3.422 8 O -0.578 6.578 9 N -0.582 5.582 10 C 0.078 3.922 11 C 0.166 3.834 12 H 0.070 0.930 13 C 0.150 3.850 14 N -0.756 5.756 15 C -0.219 4.219 16 H 0.068 0.932 17 C -0.043 4.043 18 N -0.975 5.975 19 Si 0.930 3.070 20 H -0.299 1.299 21 H -0.299 1.299 22 H -0.250 1.250 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.164 4.164 26 C 0.329 3.671 27 O -0.495 6.495 28 N -0.533 5.533 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.191 0.809 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.362 0.638 42 H 0.256 0.744 43 H 0.130 0.870 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.084 0.916 48 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.875 26.360 2.259 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.019 3.981 3 C -0.190 4.190 4 C -0.001 4.001 5 C -0.174 4.174 6 C -0.220 4.220 7 C 0.365 3.635 8 O -0.458 6.458 9 N -0.313 5.313 10 C -0.064 4.064 11 C 0.062 3.938 12 H 0.088 0.912 13 C 0.024 3.976 14 N -0.401 5.401 15 C -0.350 4.350 16 H 0.086 0.914 17 C -0.236 4.236 18 N -0.626 5.626 19 Si 0.760 3.240 20 H -0.227 1.227 21 H -0.226 1.226 22 H -0.175 1.175 23 C -0.183 4.183 24 C -0.206 4.206 25 C -0.201 4.201 26 C 0.151 3.849 27 O -0.304 6.304 28 N -0.254 5.254 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.208 0.792 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.195 0.805 42 H 0.066 0.934 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.103 0.897 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -12.881 25.460 1.306 28.562 hybrid contribution 0.525 -0.921 -0.861 1.366 sum -12.355 24.538 0.445 27.477 Atomic orbital electron populations 1.20931 0.85411 1.04860 1.04822 1.21974 0.98769 0.86769 0.90552 1.22195 0.92719 1.00727 1.03348 1.20607 0.94705 0.93636 0.91105 1.20984 0.99914 0.92519 1.03997 1.20767 0.93653 0.95298 1.12312 1.18133 0.86936 0.74920 0.83495 1.90760 1.70223 1.52040 1.32808 1.47675 1.06365 1.70692 1.06525 1.21898 0.97262 1.02134 0.85145 1.20819 0.78979 0.94164 0.99822 0.91172 1.21104 0.96482 0.83788 0.96258 1.42786 1.62984 1.02485 1.31875 1.18999 1.29409 0.83557 1.03029 0.91400 1.25135 1.02647 0.95068 1.00708 1.69819 1.55456 0.97774 1.39515 0.85807 0.78042 0.77811 0.82322 1.22686 1.22587 1.17493 1.22425 0.97287 0.95535 1.03057 1.23053 1.03738 0.97293 0.96538 1.23022 0.91949 1.02764 1.02367 1.19294 0.87047 0.84533 0.94023 1.84832 1.76910 1.33769 1.34936 1.67101 1.08670 1.32549 1.17115 0.88189 0.87072 0.91313 0.79216 0.89844 0.86438 0.91781 0.93474 0.88028 0.90044 0.94684 0.93481 0.80521 0.93448 0.85216 0.90464 0.86426 0.86190 0.89719 0.73076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.16 71.23 0.72 -0.50 16 2 C 0.16 3.21 6.78 42.58 0.29 3.50 16 3 C -0.17 -2.70 9.41 22.32 0.21 -2.49 16 4 C 0.01 0.16 5.76 -19.42 -0.11 0.04 16 5 C -0.12 -1.76 9.69 71.24 0.69 -1.07 16 6 C -0.21 -6.49 3.81 -19.91 -0.08 -6.57 16 7 C 0.58 20.33 5.27 86.69 0.46 20.79 16 8 O -0.58 -25.57 16.45 -4.02 -0.07 -25.64 16 9 N -0.58 -17.56 2.32 -826.36 -1.92 -19.47 16 10 C 0.08 1.84 9.22 127.77 1.18 3.02 16 11 C 0.17 5.18 2.39 44.99 0.11 5.29 16 12 H 0.07 2.66 6.67 -2.39 -0.02 2.64 16 13 C 0.15 5.60 5.25 86.38 0.45 6.05 16 14 N -0.76 -36.29 5.18 -343.46 -1.78 -38.07 16 15 C -0.22 -12.49 10.47 84.03 0.88 -11.61 16 16 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 17 C -0.04 -2.61 5.50 84.86 0.47 -2.14 16 18 N -0.97 -63.27 13.97 21.65 0.30 -62.97 16 19 Si 0.93 50.34 27.90 68.60 1.91 52.25 16 20 H -0.30 -16.62 7.11 99.48 0.71 -15.91 16 21 H -0.30 -16.34 7.11 99.48 0.71 -15.64 16 22 H -0.25 -13.13 5.38 99.48 0.54 -12.60 16 23 C -0.16 -3.56 5.17 -10.79 -0.06 -3.61 16 24 C -0.17 -3.29 10.18 30.62 0.31 -2.97 16 25 C -0.16 -3.19 9.79 30.62 0.30 -2.89 16 26 C 0.33 11.21 7.77 85.13 0.66 11.87 16 27 O -0.50 -19.62 12.11 -87.22 -1.06 -20.68 16 28 N -0.53 -16.06 10.28 -296.07 -3.04 -19.10 16 29 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.11 0.60 8.07 -2.39 -0.02 0.58 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.12 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.06 1.13 7.19 -2.39 -0.02 1.11 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.85 6.80 -2.39 -0.02 1.83 16 38 H 0.08 1.61 6.64 -2.39 -0.02 1.60 16 39 H 0.04 1.33 7.44 -2.39 -0.02 1.32 16 40 H 0.05 1.66 7.70 -2.39 -0.02 1.64 16 41 H 0.36 18.19 5.29 -92.71 -0.49 17.70 16 42 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 43 H 0.13 2.23 6.95 -2.39 -0.02 2.22 16 44 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 45 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.08 1.93 7.65 -2.39 -0.02 1.91 16 48 H 0.41 14.25 9.06 -74.06 -0.67 13.58 16 Total: -1.00 -84.50 393.30 0.50 -84.00 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.34 Total: 32.98 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.48 Total: 16.70 kcal Atomic # 7 Polarization: -133.17 SS G_CDS: -6.44 Total: -139.61 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -1.12 Total: -46.32 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 1.91 Total: 52.25 kcal Total: -84.50 0.50 -84.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676238673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.472 kcal (2) G-P(sol) polarization free energy of solvation -84.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds