Wall clock time and date at job start Tue Mar 31 2020 17:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38092 * 119.58652 * 2 1 4 4 C 1.38783 * 119.28632 * 179.74961 * 3 2 1 5 5 C 1.50698 * 120.75546 * 180.25642 * 4 3 2 6 6 C 1.38415 * 118.48634 * 0.49057 * 4 3 2 7 7 C 1.50699 * 120.44269 * 179.76129 * 6 4 3 8 8 C 1.50704 * 109.47196 * 274.96871 * 7 6 4 9 9 O 1.21287 * 119.99685 * 4.64650 * 8 7 6 10 10 N 1.34773 * 119.99955 * 184.64220 * 8 7 6 11 11 C 1.46493 * 120.00329 * 4.86837 * 10 8 7 12 12 C 1.46506 * 119.99969 * 184.86706 * 10 8 7 13 13 C 1.53001 * 109.47032 * 85.03255 * 12 10 8 14 14 H 1.09003 * 112.73993 * 315.63918 * 13 12 10 15 15 C 1.53498 * 113.46461 * 86.45895 * 13 12 10 16 16 C 1.53229 * 83.43001 * 140.67739 * 15 13 12 17 17 N 1.47064 * 88.08615 * 334.10322 * 16 15 13 18 18 C 1.36931 * 136.06086 * 207.20774 * 17 16 15 19 19 H 1.08004 * 120.00234 * 174.35753 * 18 17 16 20 20 C 1.38813 * 119.99987 * 354.63527 * 18 17 16 21 21 N 1.31620 * 119.99805 * 4.72481 * 20 18 17 22 22 Si 1.86796 * 120.00072 * 184.72742 * 20 18 17 23 23 H 1.48508 * 109.47198 * 64.99810 * 22 20 18 24 24 H 1.48504 * 109.47169 * 184.99425 * 22 20 18 25 25 H 1.48496 * 109.47469 * 304.99780 * 22 20 18 26 26 C 1.38880 * 119.11354 * 359.48880 * 6 4 3 27 27 O 1.35678 * 119.68066 * 180.29196 * 26 6 4 28 28 N 1.31937 * 119.58275 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46956 * 270.01780 * 1 2 3 30 30 H 1.09001 * 109.47149 * 30.02519 * 1 2 3 31 31 H 1.09009 * 109.46966 * 150.02207 * 1 2 3 32 32 H 1.08003 * 120.34942 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47408 * 274.70088 * 5 4 3 34 34 H 1.09004 * 109.46975 * 34.69632 * 5 4 3 35 35 H 1.08999 * 109.47634 * 154.69820 * 5 4 3 36 36 H 1.08995 * 109.47319 * 154.96921 * 7 6 4 37 37 H 1.09007 * 109.47334 * 34.96934 * 7 6 4 38 38 H 1.08998 * 109.47686 * 269.99873 * 11 10 8 39 39 H 1.09002 * 109.47115 * 29.99967 * 11 10 8 40 40 H 1.08997 * 109.47557 * 149.99402 * 11 10 8 41 41 H 1.08997 * 109.46669 * 325.03617 * 12 10 8 42 42 H 1.08997 * 109.47242 * 205.03480 * 12 10 8 43 43 H 1.09007 * 114.20249 * 254.43385 * 15 13 12 44 44 H 1.08997 * 114.20638 * 27.05608 * 15 13 12 45 45 H 1.09004 * 113.38669 * 219.28935 * 16 15 13 46 46 H 1.08998 * 113.47444 * 88.92988 * 16 15 13 47 47 H 0.96996 * 120.00053 * 180.02562 * 21 20 18 48 48 H 0.96702 * 113.99799 * 90.00230 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1936 0.0053 5 6 4.3540 2.4846 0.0113 6 6 4.2304 -0.0264 0.0000 7 6 5.7363 -0.0857 0.0000 8 6 6.2433 0.0238 -1.4150 9 8 5.4656 0.2231 -2.3241 10 7 7.5609 -0.0997 -1.6700 11 6 8.4870 -0.4459 -0.5891 12 6 8.0671 0.1123 -3.0285 13 6 8.3136 1.6054 -3.2536 14 1 7.5003 2.2278 -2.8802 15 6 9.7022 2.0717 -2.7948 16 6 9.6418 2.9253 -4.0658 17 7 8.7161 1.9315 -4.6300 18 6 8.3809 1.4968 -5.8845 19 1 7.7067 0.6616 -6.0044 20 6 8.9122 2.1259 -7.0021 21 7 9.8088 3.0785 -6.8570 22 14 8.3544 1.6207 -8.7117 23 1 6.9163 1.9502 -8.8808 24 1 9.1525 2.3514 -9.7288 25 1 8.5510 0.1590 -8.8848 26 6 3.4802 -1.1951 0.0004 27 8 4.1092 -2.3973 0.0013 28 7 2.1584 -1.1474 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6478 2.1356 0.0004 33 1 4.4732 2.8417 -1.0117 34 1 3.8153 3.2304 0.5959 35 1 5.3357 2.3156 0.4538 36 1 6.0626 -1.0323 0.4306 37 1 6.1324 0.7389 0.5927 38 1 8.8501 0.4662 -0.1155 39 1 7.9702 -1.0581 0.1500 40 1 9.3299 -1.0036 -0.9973 41 1 7.3334 -0.2477 -3.7497 42 1 9.0016 -0.4338 -3.1574 43 1 9.6973 2.6454 -1.8679 44 1 10.4645 1.2929 -2.8153 45 1 10.5932 2.9817 -4.5947 46 1 9.1867 3.9035 -3.9106 47 1 10.1798 3.5184 -7.6378 48 1 4.2913 -2.7452 0.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688883918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:25 Heat of formation + Delta-G solvation = 20.438734 kcal Electronic energy + Delta-G solvation = -29244.984866 eV Core-core repulsion = 25302.561995 eV Total energy + Delta-G solvation = -3942.422871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03180 -39.56734 -37.95199 -37.44913 -35.23820 -34.82795 -32.19399 -32.05324 -30.66791 -28.51269 -27.87937 -27.85137 -26.58099 -25.45979 -23.41558 -22.98928 -22.17184 -21.00547 -19.28431 -18.88551 -18.51253 -17.45971 -16.99809 -16.57795 -16.22020 -15.63601 -15.48139 -15.11631 -14.69789 -14.31944 -14.04552 -13.81725 -13.60879 -13.53769 -13.19727 -13.12944 -13.03595 -12.83234 -12.63822 -12.51547 -12.45831 -12.08923 -12.00109 -11.81779 -11.66391 -11.61020 -11.46535 -11.02725 -10.80514 -10.72922 -10.40833 -9.83570 -9.82821 -9.72231 -9.56841 -9.49210 -9.34770 -8.75422 -8.74551 -8.23725 -6.82099 -5.72162 -3.03386 0.84690 1.08377 2.85000 3.15428 3.36109 3.44917 3.48973 3.50941 3.58649 4.27514 4.45188 4.52164 4.65413 4.68147 4.75020 4.92499 5.09360 5.12871 5.19980 5.24309 5.27058 5.33664 5.37879 5.44924 5.48185 5.52265 5.56203 5.56871 5.68255 5.72336 5.84253 5.88593 5.94343 6.02054 6.15879 6.19872 6.33197 6.41906 6.48376 6.58806 6.71949 6.91069 7.28036 7.32590 7.44202 7.61110 7.62852 7.82099 8.03811 8.43030 9.10068 9.76305 10.70173 11.45688 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.003007 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.885045 B = 9308.645743 C =10025.161403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.183 4.183 4 C -0.005 4.005 5 C -0.121 4.121 6 C -0.137 4.137 7 C -0.093 4.093 8 C 0.514 3.486 9 O -0.524 6.524 10 N -0.612 5.612 11 C 0.079 3.921 12 C 0.117 3.883 13 C 0.135 3.865 14 H 0.041 0.959 15 C -0.167 4.167 16 C 0.156 3.844 17 N -0.600 5.600 18 C -0.215 4.215 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.327 3.673 27 O -0.477 6.477 28 N -0.509 5.509 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.023 0.977 47 H 0.253 0.747 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -5.168 23.329 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.012 4.012 5 C -0.178 4.178 6 C -0.141 4.141 7 C -0.133 4.133 8 C 0.301 3.699 9 O -0.400 6.400 10 N -0.346 5.346 11 C -0.064 4.064 12 C -0.006 4.006 13 C 0.027 3.973 14 H 0.059 0.941 15 C -0.205 4.205 16 C 0.030 3.970 17 N -0.326 5.326 18 C -0.343 4.343 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.148 3.852 27 O -0.283 6.283 28 N -0.229 5.229 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.063 0.937 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.263 -5.818 21.822 24.806 hybrid contribution 0.275 0.454 -0.533 0.752 sum -9.988 -5.363 21.289 24.119 Atomic orbital electron populations 1.20729 0.88580 1.03722 1.03004 1.20942 0.96663 0.87202 0.93987 1.21787 0.93947 0.99370 1.05167 1.20054 0.93675 0.94950 0.92547 1.20916 0.99646 0.93317 1.03884 1.20151 0.95579 0.92860 1.05494 1.20535 0.91661 1.04839 0.96257 1.20275 0.82036 0.77155 0.90438 1.90759 1.55005 1.47606 1.46588 1.47860 1.06460 1.69743 1.10567 1.21801 0.93948 1.00439 0.90240 1.21878 0.99370 0.98252 0.81127 1.22395 0.94522 0.92909 0.87466 0.94129 1.23695 0.97717 1.00980 0.98127 1.21896 0.95458 0.91126 0.88487 1.45619 1.45744 1.42067 0.99171 1.18880 1.23613 1.11400 0.80361 0.90217 1.24784 0.99547 0.98370 0.97647 1.69840 1.30789 1.27457 1.28643 0.86239 0.78140 0.77756 0.83947 1.21244 1.21598 1.20946 1.18813 0.86668 0.84646 0.95033 1.84864 1.76566 1.33583 1.33264 1.66939 1.09445 1.30724 1.15749 0.90356 0.90459 0.90396 0.84469 0.89485 0.90792 0.90952 0.88074 0.87706 0.92514 0.91613 0.90861 0.90303 0.90380 0.92939 0.90626 0.91364 0.95938 0.93688 0.74850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.01 0.37 -0.48 16 2 C 0.15 1.77 6.78 -82.60 -0.56 1.21 16 3 C -0.18 -2.03 9.46 -39.43 -0.37 -2.40 16 4 C 0.00 -0.06 5.91 -104.36 -0.62 -0.67 16 5 C -0.12 -1.22 9.74 36.00 0.35 -0.87 16 6 C -0.14 -1.74 4.41 -104.32 -0.46 -2.20 16 7 C -0.09 -1.01 4.01 -29.03 -0.12 -1.12 16 8 C 0.51 8.11 7.62 -10.99 -0.08 8.03 16 9 O -0.52 -11.04 15.67 5.55 0.09 -10.95 16 10 N -0.61 -8.95 2.88 -181.57 -0.52 -9.48 16 11 C 0.08 0.75 10.25 59.84 0.61 1.36 16 12 C 0.12 2.18 5.38 -4.04 -0.02 2.16 16 13 C 0.14 2.85 4.29 -72.40 -0.31 2.54 16 14 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.17 -3.10 8.00 -26.36 -0.21 -3.31 16 16 C 0.16 3.75 7.32 -8.65 -0.06 3.68 16 17 N -0.60 -15.83 3.65 -177.18 -0.65 -16.47 16 18 C -0.22 -6.26 10.54 -15.06 -0.16 -6.42 16 19 H 0.08 2.28 7.83 -52.48 -0.41 1.87 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.98 11.60 55.49 0.64 -27.34 16 22 Si 0.91 23.02 29.56 -169.99 -5.02 18.00 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 26 C 0.33 4.45 7.72 -17.13 -0.13 4.31 16 27 O -0.48 -5.63 12.54 -18.74 -0.23 -5.86 16 28 N -0.51 -7.15 10.30 -9.55 -0.10 -7.25 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 35 H 0.07 0.64 6.00 -51.93 -0.31 0.33 16 36 H 0.10 0.83 6.26 -51.93 -0.32 0.51 16 37 H 0.10 0.88 6.25 -51.93 -0.32 0.55 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.44 6.35 -51.93 -0.33 0.11 16 40 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 41 H 0.08 1.75 7.51 -51.93 -0.39 1.36 16 42 H 0.08 1.37 7.57 -51.93 -0.39 0.98 16 43 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.08 1.33 7.94 -51.93 -0.41 0.92 16 45 H 0.07 1.79 7.27 -51.93 -0.38 1.41 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 48 H 0.39 2.28 9.06 45.56 0.41 2.69 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -38.80 394.09 -8.36 -47.16 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.63 Total: 0.73 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.87 Total: 5.52 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.63 Total: -60.54 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.15 Total: -16.82 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.80 -8.36 -47.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688883918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.600 kcal (2) G-P(sol) polarization free energy of solvation -38.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds